Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g00983 ATGGCGGATTCGCTGAGAAAAACGCCGTCGTTTCGAGCGGCCTTCACTATCGCCGTCGTCGCCTTCGCTTCTCTGTTCTCTGCTGTTTCGTCTTATCACCGCCCGCCACCTCGCCGGAATCTCTTCGTTCCTCGCCGTCAAGATCTCGACTCCGATTCTCCAGAACAGGTACATATATCTCTTGTTGGTGTTGATAAAATGAGGATAACATGGATCACAGAGGACTCTGCACCAGCTATGGTGGAATATGGCACATTCCCTGGAGTTTACGACAAGAATGTAACTGGAACTACTTCCTCATACAAATATGCATTATATGAATCTGGTAATATTCATGATGTAACCATTGGTCCTCTCCATCCCGACACCACTTATTACTATCGCTGCAGCTCGAACTCGGCCCGGAACTTCACTTTCAAAACCCCTCCTTCTCAGCTCCCCATCAAATTTGTTGTCATTGGTGATCTTGGGCAGACAGAATGGACCCAAAAAACTCTCGAACATGTAGTGAAATCAGACTATGATGTGCTGCTACTTCCCGGTGACTTGTCGTATGCTGATTTTGTTCAGTCTCTGTGGGACTCGTTCGGCAGGCTCGTCGAGCCACTGGCTAGCCAAAGGCCATGGATGGTGACTCAGGGAAACCATGAAGTAGAGCGCGTCCCAGTGATTCATTCCCAACCTTTCACAGCATACAATGCAAGATGGCACATGCCCTTCGAAGAAAGCTCGTCGAATTCCAACCTTTATTATTCATTTGACACGGCTGGCGTGCACGTCATTATGTTGGGATCTTATACCGATTTTGACAAGAGTTCAGCTCAGTACGAATGGCTCGTAGCAGACTTGAAGAAGATCGAGCGCGCAACAACCCCGTGGATTCTGGTGCTTATTCATGCTCCATGGTATAACTCCAACACTGCTCACCAGGGAGACAGAGAGTCTGTAAGCATGAAGGCAGCCATGGAAGATCTGCTCTACCAAGCTCGAGTAGACGTGGTGTTTGCTGGGCATGTCCATGCTTACGAGCGTTTCACTCGTGTTTATAATGGGGAAGCAAACAATTGTGCACCAATACATATCACAATCGGCGACGGGGGCAACCGTGAAGGCCTTGCGAGCATGTATATCGATCCAAAGCCAATGATTTCGTTATTCAGGCAAGCGAGCTTTGGACATGGTCAGTTGGATGTGGTGAATGCGACACATGCACTCTGGACATGGCACAGGAATGACGACAACGTAGCGGTCGTTGGCGACTCACTCTGGTTTACAAGCCTCTCTTCTGACCCAGCTTGTAGAATATGA 1308 48.7 MADSLRKTPSFRAAFTIAVVAFASLFSAVSSYHRPPPRRNLFVPRRQDLDSDSPEQVHISLVGVDKMRITWITEDSAPAMVEYGTFPGVYDKNVTGTTSSYKYALYESGNIHDVTIGPLHPDTTYYYRCSSNSARNFTFKTPPSQLPIKFVVIGDLGQTEWTQKTLEHVVKSDYDVLLLPGDLSYADFVQSLWDSFGRLVEPLASQRPWMVTQGNHEVERVPVIHSQPFTAYNARWHMPFEESSSNSNLYYSFDTAGVHVIMLGSYTDFDKSSAQYEWLVADLKKIERATTPWILVLIHAPWYNSNTAHQGDRESVSMKAAMEDLLYQARVDVVFAGHVHAYERFTRVYNGEANNCAPIHITIGDGGNREGLASMYIDPKPMISLFRQASFGHGQLDVVNATHALWTWHRNDDNVAVVGDSLWFTSLSSDPACRI 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24950234 24955247 + ClCG04G009980.1 Cla04g00983 271211

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g00983 435 CDD MPP_PAPs 147 426 IPR041792 -
Cla04g00983 435 SUPERFAMILY Purple acid phosphatase, N-terminal domain 46 143 IPR008963 GO:0003993|GO:0046872
Cla04g00983 435 Pfam Calcineurin-like phosphoesterase 149 342 IPR004843 GO:0016787
Cla04g00983 435 PANTHER ACID PHOSPHATASE RELATED 17 433 IPR039331 GO:0003993
Cla04g00983 435 PANTHER PURPLE ACID PHOSPHATASE 17 433 - -
Cla04g00983 435 Pfam Purple acid Phosphatase, N-terminal domain 54 141 IPR015914 GO:0003993|GO:0046872
Cla04g00983 435 Gene3D - 145 432 IPR029052 -
Cla04g00983 435 Gene3D - 53 144 - -
Cla04g00983 435 Pfam Iron/zinc purple acid phosphatase-like protein C 357 417 IPR025733 -
Cla04g00983 435 SUPERFAMILY Metallo-dependent phosphatases 147 415 IPR029052 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g00983 K22390 ACP7; acid phosphatase type 7 - csv:101212320 769.615
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla04g00983 Cla06g01740 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00499 Cla-Chr2:4932405 Cla04g00983 Cla-Chr4:24950234 9.50E-87 dispersed
Cla04g00983 Cla-Chr4:24950234 Cla05g01492 Cla-Chr5:24112624 1.78E-179 dispersed
Cla04g00983 Cla-Chr4:24950234 Cla01g01950 Cla-Chr1:34162905 6.34E-94 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1005 . . Bda01g00326 . . . . . . . . Cma07g00857 Car03g01049 . . Cpe10g00278 . . . . . . . . Cla04g00983 Cam04g1023 Cec04g1147 Cco04g1211 Clacu04g1052 Cmu04g1039 Cre04g1093 . . Cone13ag1189 Cone19ag1172 Lsi01g01228 Csa06g02677 Chy08g00933 . . . . . Bpe04g00752 . . . . Cmo03g01151 Cmo07g00889 . . . . . Cpe19g00466 . . . . . . . . . . . . . . . . . Cme08g01204
Vvi17g112 Blo04g00867 . . . . . Bma06g00081 . . . Cma10g00063 . Car10g00050 . . . . Bhi02g00516 . . . . . . Cla06g01740 Cam06g1930 Cec06g1980 Cco06g1984 Clacu06g1886 Cmu06g1828 Cre06g2643 . Cone16ag0269 . . . . . . . . . Bda14g01365 . . Bma03g01255 . . . . . . . . . . . . . . . . . Cla04g00983 Cam04g1023 Cec04g1147 Cco04g1211 Clacu04g1052 Cmu04g1039 Cre04g1093 Lsi06g01639 Csa01g00058 Chy02g02661 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007159 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 0 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla04g00983 Cla_Chr04 FPKM 94.061691 93.259575 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0