Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01021 ATGCGTGGCGCCTCTCGAGCTCCGAACCGGTCGGAGCCACTGCCTCAGTCCCAAACTGCCCAGATCCTGCCGCCTCTCAAGCGCCACCTTGCTTTTGACTCCGCTAAGCCGCCCTTCGCTCCTCCGGGTCATTATTACCACTTCGGCGGCGGTTCCTCCAATGCTATTGATCAACAACCTGATTCCATCGTTGTTAAACCTCTTAAACCAAAGCAGAAGGGTGTCATGTATAACAATGTGGTTGAATCGAACGATTACAGTCATGATCAGGGATCTTCTCTTAGTTCTGTGCAGACACCTGTGTCTGGAAAAGGAGGAAGGGTGTACAATAAGTCGAAGACTTCAAGGAAAACTACATCTGGGCCTCAAACACCTATCTCAGACACTAGTGAGAAAATTTATATGAAACCAAAGCAGAAGGGTGTCATGTATAACAATGTGGTTGAATCGAACGATTACAGTCATGATCAGGGATCTTCTCTTAGTTCTGTGCAGACACCTGTGTCTGGAAAAGGAGGAAGGGTGTACAATAAGTCGAAGACTTCAAGGAAAACTACATCTGGGCCTCAAACACCTATCTCAGACACTAGCACTTATTCTCCCCTTACTCCAGCTGGAAACTGTCGATATGACAGTTCTTTAGGTCTTCTGACAAAAAAATTCATCAATCTAATTAAGCAAGCAAGGGATGGCATTCTTGACTTGAACAAAGCTGCAGAAACTTTGCAGGTGCAGAAAAGGAGAATATATGACATAACAAATGTTTTGGAAGGCATAGGTCTCATAGAAAAGAAGCTGAAAAACATAATATACTGGAAAGGTTTCAATCAACAAATTCCAGGAAATGTGGATAGCGATACTTCTATGTTGCAGGTGGATGTTGAAAACCTTTCTTTTGAAGAGCGTAGATTAGATGATAAGATAAGAGTAATGCAGGAAAGACTGAGGAATCTGAGTGAAGACGAAAATATCCAAAAGTGGCTCTTTGTGACAGAAGAAGACATTAAAAACTTGCCTTGCTTTCAGAATGAAACGCTGATAGCAATTAAAGCTCCTCATGGAACCACCTTGGAAGTTCCTGATCCTGATGAAGCTGTAGATTATCCACAGAGAAGATACCGGATAGTTCTTAGGAGTACAATGGGTCCTATTGATGTATATCTTGTCAGTCAATTTGAGGAAAAGTTTGAGGAGATGAATGTGGTTCCGCCACCTAGTAGCTTCCTACATGCTTCCAGTTCAGGATCAAACGAACATCTAGCAACAGAAGCAATCATCGGGGAGAGTAGTAGAAACGAAATTGAACCTCAAGCTCATCTGTCCCAACACAGCAGCAGCTGTGATGTGAATGGTTCCAATGAGTTTCCTGTTGGAATGATGAAGATTATTCCTTCAGATGTCGATAATGATGCAGATTACTGGCTGTTATCAGATGCTGAAGTTAGCATTACAGATATGTGGAGAACCGATTCAGATATTGCATGGGATCAATCAGATATGGTTCCTCATGACTTTTTAATATCTGATGTCAGTGCTCAAAGGCCAAGACCAGGAAGCCCACATTCAGAGACAGCCGAAGCACCATCTGATGTTAACTTAAGACAGAGATGA 1611 42.77 MRGASRAPNRSEPLPQSQTAQILPPLKRHLAFDSAKPPFAPPGHYYHFGGGSSNAIDQQPDSIVVKPLKPKQKGVMYNNVVESNDYSHDQGSSLSSVQTPVSGKGGRVYNKSKTSRKTTSGPQTPISDTSEKIYMKPKQKGVMYNNVVESNDYSHDQGSSLSSVQTPVSGKGGRVYNKSKTSRKTTSGPQTPISDTSTYSPLTPAGNCRYDSSLGLLTKKFINLIKQARDGILDLNKAAETLQVQKRRIYDITNVLEGIGLIEKKLKNIIYWKGFNQQIPGNVDSDTSMLQVDVENLSFEERRLDDKIRVMQERLRNLSEDENIQKWLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEMNVVPPPSSFLHASSSGSNEHLATEAIIGESSRNEIEPQAHLSQHSSSCDVNGSNEFPVGMMKIIPSDVDNDADYWLLSDAEVSITDMWRTDSDIAWDQSDMVPHDFLISDVSAQRPRPGSPHSETAEAPSDVNLRQR 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25311946 25319774 - ClCG04G010370.1 Cla04g01021 271249

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01021 536 MobiDBLite consensus disorder prediction 83 138 - -
Cla04g01021 536 MobiDBLite consensus disorder prediction 510 536 - -
Cla04g01021 536 SUPERFAMILY Winged helix DNA-binding domain 209 272 IPR036390 -
Cla04g01021 536 Pfam E2F transcription factor CC-MB domain 290 390 IPR032198 GO:0046983
Cla04g01021 536 MobiDBLite consensus disorder prediction 150 200 - -
Cla04g01021 536 PANTHER TRANSCRIPTION FACTOR E2FB 24 129 - -
Cla04g01021 536 Coils Coil 301 321 - -
Cla04g01021 536 Gene3D - 281 391 - -
Cla04g01021 536 PANTHER TRANSCRIPTION FACTOR E2FB 131 524 - -
Cla04g01021 536 SMART E2F_TDP_2 209 274 IPR003316 GO:0005667|GO:0006355
Cla04g01021 536 MobiDBLite consensus disorder prediction 1 53 - -
Cla04g01021 536 Gene3D - 203 277 IPR036388 -
Cla04g01021 536 MobiDBLite consensus disorder prediction 83 130 - -
Cla04g01021 536 PANTHER TRANSCRIPTION FACTOR E2F 131 524 IPR015633 GO:0000978|GO:0006357
Cla04g01021 536 Pfam E2F/DP family winged-helix DNA-binding domain 211 274 IPR003316 GO:0005667|GO:0006355
Cla04g01021 536 CDD E2F_DD 290 391 IPR032198 GO:0046983
Cla04g01021 536 PANTHER TRANSCRIPTION FACTOR E2F 24 129 IPR015633 GO:0000978|GO:0006357
Cla04g01021 536 SUPERFAMILY E2F-DP heterodimerization region 288 391 IPR037241 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01021 K06620 E2F3; transcription factor E2F3 - csv:101212480 760.755
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01021 Cla-Chr4:25311946 Cla06g01632 Cla-Chr6:29848864 3.38E-11 dispersed
Cla08g01431 Cla-Chr8:27149914 Cla04g01021 Cla-Chr4:25311946 5.84E-77 transposed
Cla02g02172 Cla-Chr2:36787330 Cla04g01021 Cla-Chr4:25311946 4.84E-160 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g917 . Blo12g00527 . Bda03g00671 . . . . . . . Cma07g00828 Car03g01015 Car07g00815 . Cpe10g00310 . Bhi03g01787 Tan03g1249 . . . . . Cla04g01021 Cam04g1063 Cec04g1183 Cco04g1250 Clacu04g1090 Cmu04g1074 Cre04g1133 Cone3ag0151 Cone10ag0135 . . Lsi01g01191 Csa06g02714 Chy08g00971 . . . . . Bpe04g00633 . . Bma04g00537 . Cmo03g01117 Cmo07g00858 . . . . . Cpe19g00497 . . . . . . . . . . . . . . . . . Cme08g01161
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla01g01399 CCT 591 948 E2F-DP Transcription Factor Family AT3G48160 56.4 1.1e-102 370.5
Cla02g02172 . 10 466 E2F-DP Transcription Factor Family AT5G22220 50.4 1.6e-100 363.6
Cla04g01021 . 138 525 E2F-DP Transcription Factor Family AT5G22220 52.9 1.8e-91 333.6
Cla08g01431 . 171 425 E2F-DP Transcription Factor Family AT1G47870 54.5 4.9e-66 248.8
Cla02g02172 . 10 466 E2F-DP Transcription Factor Family AT5G22220 50.4 1.6e-100 363.6
Cla04g01021 . 138 525 E2F-DP Transcription Factor Family AT5G22220 52.9 1.8e-91 333.6
Cla08g01431 . 171 425 E2F-DP Transcription Factor Family AT1G47870 54.5 4.9e-66 248.8
Cla01g01399 CCT 591 948 E2F-DP Transcription Factor Family AT3G48160 56.4 1.1e-102 370.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005036 1 2 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 3 0 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60928 PF16421 E2F_CC-MB 5.90E-33 No_clan Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla04g01021 Cla_Chr04 FPKM 16.804964 23.235968 39.746086 41.431198 7.930141 9.159021 6.933275 87.789528 93.60939 91.861855