Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01024 ATGCTGGCTGATCTCTCTTCTCCTTCACTTCCTTGTTTTGAGCCTTTGTCTAATTGCTTTGAAAACAATGGAACCAATAACAAAAGAAAAAGAAGACCTGCTGGAACTCCAGACCCCGATGCAGAGGTCGTTTCTCTCTCTCCAAAAACTCTATTGGAATCAGATCGTTACGTATGTGAGATCTGCAATCAAGGGTTTCAAAGAGATCAGAATCTACAGATGCATCGACGTCGACACAAGGTGCCATGGAAGTTATTGAAAAGAACGGAGGCGACGGCCGTAGTGAGAAAACGGGTGTTCGTTTGCCCGGAACCGAGCTGCTTACACCATAACCCTACTCATGCTTTGGGGGATTTGGTAGGGATAAAGAAGCACTTTAGAAGAAAACATAGTAACCATAAGCAATGGGTTTGTGAAAAATGCTCTAAAGGATATGCTGTTCAATCTGATTACAAGGCTCATCTCAAAACTTGTGGAACTAGAGGCCACTCTTGTGACTGTGGTCGAGTTTTCTCCAGGGTTGAGAGTTTCATAGAACATCAAGATAGTTGCAAATTGGGACATCATCAACAACAATCAGAACAAAAAATTCCATGTTTATCTAGAACAGCTTCAAGTCCAACTCCAAGCCCTTCTTCAGATACAAATTTCAGCTTCTTAAAACAAAACCAAACATTTAGTACTACAATTGATCATCATCATCATGATGGAGCTGACAAATATTCAACAAAAACAACAATAATTCCCCAGAGAATTATTAGCCATAATCATCATCAAAATTTGGACCTTCAACTTTCCACAAATTCAACTTCCATTCATGTTTCAGTTTCTCCAAAAAGACACGAAAATTACTCAACCCATTTGCAACTTTCGATTGGTTCTTGCAATTATGGTGAGAAAAATGATCATGATAGTAATAGCAACAATCATGATGATGACGAGAAATTGGGTTTTTTGAGGCTGAAAGAGGAAGCTAAAGAACAAATGAGAGTGGCAATGGAGGAGAAAGCTGTGGCTGAAGAAGCAAGAAATGAAGCTAAGAAGCAAATTGAATTGGCTGAAAAGGAATTGGTAAATGCCAAGAGAATGAGACAACAAGCACAAGCTGAGTTACAAAGAGCCCTTGCTTTGAAAGAACATGCCATCAAGAAAATCAACTCCACCATCCTCCAAATCACTTGCCAAGTTTGTAGGCAACATTTTCATCCCTTGCCTAAAATTTGA 1224 39.46 MLADLSSPSLPCFEPLSNCFENNGTNNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRTEATAVVRKRVFVCPEPSCLHHNPTHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDSCKLGHHQQQSEQKIPCLSRTASSPTPSPSSDTNFSFLKQNQTFSTTIDHHHHDGADKYSTKTTIIPQRIISHNHHQNLDLQLSTNSTSIHVSVSPKRHENYSTHLQLSIGSCNYGEKNDHDSNSNNHDDDEKLGFLRLKEEAKEQMRVAMEEKAVAEEARNEAKKQIELAEKELVNAKRMRQQAQAELQRALALKEHAIKKINSTILQITCQVCRQHFHPLPKI 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25367873 25370324 + ClCG04G010400.1 Cla04g01024 271252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01024 407 SMART c2h2final6 136 163 IPR013087 -
Cla04g01024 407 SMART c2h2final6 57 79 IPR013087 -
Cla04g01024 407 SMART c2h2final6 100 130 IPR013087 -
Cla04g01024 407 Gene3D Classic Zinc Finger 44 132 - -
Cla04g01024 407 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Cla04g01024 407 PANTHER OS03G0310200 PROTEIN 14 402 IPR039288 GO:0009630
Cla04g01024 407 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Cla04g01024 407 MobiDBLite consensus disorder prediction 23 43 - -
Cla04g01024 407 MobiDBLite consensus disorder prediction 195 218 - -
Cla04g01024 407 SUPERFAMILY beta-beta-alpha zinc fingers 56 156 IPR036236 -
Cla04g01024 407 Coils Coil 322 384 - -
Cla04g01024 407 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 14 402 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00664 Cla-Chr1:7864149 Cla04g01024 Cla-Chr4:25367873 2.21E-142 dispersed
Cla04g01024 Cla-Chr4:25367873 Cla04g01243 Cla-Chr4:27554467 5.74E-172 dispersed
Cla04g01024 Cla-Chr4:25367873 Cla08g01505 Cla-Chr8:27861370 6.38E-74 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60930 None None None None Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01024 K25871 - csv:101210748 737.258