Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla04g01028 | ATGGAGATTCTGCGCCGTACTGATTCTCCCTATGTCGTTCAGTGCCATGGAATCTTCGAGAAGCCTTCTGGAGATGTAACGATTTTGATGGAGTATATGGATCTAGGATCGCTTGATTCACTTTTGAAAAAGAATTCGACGTTGTCGGAATCGACGCTTGCTCACGTATCGCGTCAAGTTCTTAACGGACTTCATTATCTTCATTCTCACAAAATCATTCATCGCGATATTAAACCGTCGAACCTGTTGGTGAATAAGAATATGGAGGTTAAGATTGCTGATTTTGGAGTTAGTAAAATTATGTGCAGGACTTTGGATGCTTGTAATTCCTACGTCGGAACTTGCGCTTATATGAGTCCAGAGCGGTTCGATCCAGAGACTTACGGCGGAAATTACAACGGTTACGCCGGTGATATTTGGAGTTTGGGGCTTACTCTTCTGGAACTTTATTTAGGTCATTTTCCTTTTCTTCCGCCTGGACAGAGACCGGATTGGGCGACTCTGATGTGTGCGATTTGCTTCGGTGAACCACCTACACTGCCGGAGAATGCGTCGGAGGAGTTTCGAAGCTTTGTTGAGTGTTGCTTGCAGAAGGAATCTAGCAAGAGGTGGACGGCGGCGCAATTGTTGACGCATCCGTTTGTATGCAGGGAATCATCGAGATCCGATCGATTAATCGGCGGTGGATTGAAGGATTCCGAATCACTGGCAGTTTAA | 717 | 45.61 | MEILRRTDSPYVVQCHGIFEKPSGDVTILMEYMDLGSLDSLLKKNSTLSESTLAHVSRQVLNGLHYLHSHKIIHRDIKPSNLLVNKNMEVKIADFGVSKIMCRTLDACNSYVGTCAYMSPERFDPETYGGNYNGYAGDIWSLGLTLLELYLGHFPFLPPGQRPDWATLMCAICFGEPPTLPENASEEFRSFVECCLQKESSKRWTAAQLLTHPFVCRESSRSDRLIGGGLKDSESLAV | 238 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 25428858 | 25429574 | + | ClCG04G010440.1 | Cla04g01028 | 271256 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla04g01028 | 238 | Pfam | Protein kinase domain | 2 | 215 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla04g01028 | 238 | ProSiteProfiles | Protein kinase domain profile. | 1 | 215 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla04g01028 | 238 | PIRSF | ILK | 1 | 212 | - | - | |
Cla04g01028 | 238 | CDD | PKc_MAPKK_plant_like | 1 | 215 | - | - | |
Cla04g01028 | 238 | SMART | serkin_6 | 1 | 215 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla04g01028 | 238 | SUPERFAMILY | Protein kinase-like (PK-like) | 2 | 217 | IPR011009 | - | |
Cla04g01028 | 238 | Gene3D | Phosphorylase Kinase; domain 1 | 1 | 28 | - | - | |
Cla04g01028 | 238 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 72 | 84 | IPR008271 | GO:0004672|GO:0006468 | |
Cla04g01028 | 238 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE KINASE 9-LIKE | 1 | 219 | - | - | |
Cla04g01028 | 238 | PANTHER | MITOGEN-ACTIVATED KINASE KINASE KINASE | 1 | 219 | - | - | |
Cla04g01028 | 238 | Gene3D | Transferase(Phosphotransferase) domain 1 | 29 | 227 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla04g01028 | Cla-Chr4:25428858 | Cla07g01350 | Cla-Chr7:30670398 | 1.63E-87 | dispersed | |
Cla04g01028 | Cla-Chr4:25428858 | Cla03g01476 | Cla-Chr3:30269699 | 2.91E-52 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
80508 | PF00069 | Pkinase | 3.10E-53 | CL0016 | Cla | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla04g01028 | K20604 | - | csv:101203133 | 445.662 |