Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01028 ATGGAGATTCTGCGCCGTACTGATTCTCCCTATGTCGTTCAGTGCCATGGAATCTTCGAGAAGCCTTCTGGAGATGTAACGATTTTGATGGAGTATATGGATCTAGGATCGCTTGATTCACTTTTGAAAAAGAATTCGACGTTGTCGGAATCGACGCTTGCTCACGTATCGCGTCAAGTTCTTAACGGACTTCATTATCTTCATTCTCACAAAATCATTCATCGCGATATTAAACCGTCGAACCTGTTGGTGAATAAGAATATGGAGGTTAAGATTGCTGATTTTGGAGTTAGTAAAATTATGTGCAGGACTTTGGATGCTTGTAATTCCTACGTCGGAACTTGCGCTTATATGAGTCCAGAGCGGTTCGATCCAGAGACTTACGGCGGAAATTACAACGGTTACGCCGGTGATATTTGGAGTTTGGGGCTTACTCTTCTGGAACTTTATTTAGGTCATTTTCCTTTTCTTCCGCCTGGACAGAGACCGGATTGGGCGACTCTGATGTGTGCGATTTGCTTCGGTGAACCACCTACACTGCCGGAGAATGCGTCGGAGGAGTTTCGAAGCTTTGTTGAGTGTTGCTTGCAGAAGGAATCTAGCAAGAGGTGGACGGCGGCGCAATTGTTGACGCATCCGTTTGTATGCAGGGAATCATCGAGATCCGATCGATTAATCGGCGGTGGATTGAAGGATTCCGAATCACTGGCAGTTTAA 717 45.61 MEILRRTDSPYVVQCHGIFEKPSGDVTILMEYMDLGSLDSLLKKNSTLSESTLAHVSRQVLNGLHYLHSHKIIHRDIKPSNLLVNKNMEVKIADFGVSKIMCRTLDACNSYVGTCAYMSPERFDPETYGGNYNGYAGDIWSLGLTLLELYLGHFPFLPPGQRPDWATLMCAICFGEPPTLPENASEEFRSFVECCLQKESSKRWTAAQLLTHPFVCRESSRSDRLIGGGLKDSESLAV 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25428858 25429574 + ClCG04G010440.1 Cla04g01028 271256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01028 238 Pfam Protein kinase domain 2 215 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g01028 238 ProSiteProfiles Protein kinase domain profile. 1 215 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g01028 238 PIRSF ILK 1 212 - -
Cla04g01028 238 CDD PKc_MAPKK_plant_like 1 215 - -
Cla04g01028 238 SMART serkin_6 1 215 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g01028 238 SUPERFAMILY Protein kinase-like (PK-like) 2 217 IPR011009 -
Cla04g01028 238 Gene3D Phosphorylase Kinase; domain 1 1 28 - -
Cla04g01028 238 ProSitePatterns Serine/Threonine protein kinases active-site signature. 72 84 IPR008271 GO:0004672|GO:0006468
Cla04g01028 238 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 9-LIKE 1 219 - -
Cla04g01028 238 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 1 219 - -
Cla04g01028 238 Gene3D Transferase(Phosphotransferase) domain 1 29 227 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01028 Cla-Chr4:25428858 Cla07g01350 Cla-Chr7:30670398 1.63E-87 dispersed
Cla04g01028 Cla-Chr4:25428858 Cla03g01476 Cla-Chr3:30269699 2.91E-52 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80508 PF00069 Pkinase 3.10E-53 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01028 K20604 - csv:101203133 445.662