Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01028 ATGGAGATTCTGCGCCGTACTGATTCTCCCTATGTCGTTCAGTGCCATGGAATCTTCGAGAAGCCTTCTGGAGATGTAACGATTTTGATGGAGTATATGGATCTAGGATCGCTTGATTCACTTTTGAAAAAGAATTCGACGTTGTCGGAATCGACGCTTGCTCACGTATCGCGTCAAGTTCTTAACGGACTTCATTATCTTCATTCTCACAAAATCATTCATCGCGATATTAAACCGTCGAACCTGTTGGTGAATAAGAATATGGAGGTTAAGATTGCTGATTTTGGAGTTAGTAAAATTATGTGCAGGACTTTGGATGCTTGTAATTCCTACGTCGGAACTTGCGCTTATATGAGTCCAGAGCGGTTCGATCCAGAGACTTACGGCGGAAATTACAACGGTTACGCCGGTGATATTTGGAGTTTGGGGCTTACTCTTCTGGAACTTTATTTAGGTCATTTTCCTTTTCTTCCGCCTGGACAGAGACCGGATTGGGCGACTCTGATGTGTGCGATTTGCTTCGGTGAACCACCTACACTGCCGGAGAATGCGTCGGAGGAGTTTCGAAGCTTTGTTGAGTGTTGCTTGCAGAAGGAATCTAGCAAGAGGTGGACGGCGGCGCAATTGTTGACGCATCCGTTTGTATGCAGGGAATCATCGAGATCCGATCGATTAATCGGCGGTGGATTGAAGGATTCCGAATCACTGGCAGTTTAA 717 45.61 MEILRRTDSPYVVQCHGIFEKPSGDVTILMEYMDLGSLDSLLKKNSTLSESTLAHVSRQVLNGLHYLHSHKIIHRDIKPSNLLVNKNMEVKIADFGVSKIMCRTLDACNSYVGTCAYMSPERFDPETYGGNYNGYAGDIWSLGLTLLELYLGHFPFLPPGQRPDWATLMCAICFGEPPTLPENASEEFRSFVECCLQKESSKRWTAAQLLTHPFVCRESSRSDRLIGGGLKDSESLAV 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25428858 25429574 + ClCG04G010440.1 Cla04g01028 271256

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01028 238 Pfam Protein kinase domain 2 215 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g01028 238 ProSiteProfiles Protein kinase domain profile. 1 215 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g01028 238 PIRSF ILK 1 212 - -
Cla04g01028 238 CDD PKc_MAPKK_plant_like 1 215 - -
Cla04g01028 238 SMART serkin_6 1 215 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g01028 238 SUPERFAMILY Protein kinase-like (PK-like) 2 217 IPR011009 -
Cla04g01028 238 Gene3D Phosphorylase Kinase; domain 1 1 28 - -
Cla04g01028 238 ProSitePatterns Serine/Threonine protein kinases active-site signature. 72 84 IPR008271 GO:0004672|GO:0006468
Cla04g01028 238 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 9-LIKE 1 219 - -
Cla04g01028 238 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 1 219 - -
Cla04g01028 238 Gene3D Transferase(Phosphotransferase) domain 1 29 227 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01028 K20604 MKK9; mitogen-activated protein kinase kinase 9 [EC:2.7.12.2] - csv:101203133 445.662
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01028 Cla-Chr4:25428858 Cla07g01350 Cla-Chr7:30670398 1.63E-87 dispersed
Cla04g01028 Cla-Chr4:25428858 Cla03g01476 Cla-Chr3:30269699 2.91E-52 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g168 . . . . . . . . Cmo13g01011 . . . . . . Cpe20g00165 . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01809 . . . . . . . . Cma13g00976 . . . . . Bhi08g01328 . . . . . . Cla04g01028 Cam04g1070 Cec01g1584 Cco01g1633 Clacu04g1097 Cmu04g1081 Cre01g1381 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla03g01476 CCT 28 375 MAP Kinase Kinase Gene Family AT4G26070 66.4 2.0e-132 469.2
Cla11g00151 CCT 27 307 MAP Kinase Kinase Gene Family AT4G26070 67.0 3.1e-109 392.1
Cla03g01476 CCT 1 348 MAP Kinase Kinase Gene Family AT4G29810 65.6 7.1e-130 460.7
Cla11g00151 CCT 1 308 MAP Kinase Kinase Gene Family AT4G29810 62.4 9.0e-109 390.6
Cla11g00183 . 10 346 MAP Kinase Kinase Gene Family AT4G29810 53.0 2.0e-100 362.8
Cla10g01325 . 86 568 MAP Kinase Kinase Gene Family AT5G40440 79.1 2.9e-228 788.1
Cla07g01350 . 1 367 MAP Kinase Kinase Gene Family AT1G51660 68.6 1.3e-134 476.5
Cla04g01028 . 1 224 MAP Kinase Kinase Gene Family AT1G51660 55.4 9.8e-69 257.7
Cla07g01350 . 1 367 MAP Kinase Kinase Gene Family AT3G21220 63.9 1.4e-128 456.4
Cla04g01028 . 1 217 MAP Kinase Kinase Gene Family AT3G21220 55.3 2.7e-68 256.1
Cla11g00183 . 1 376 MAP Kinase Kinase Gene Family AT5G56580 74.5 2.9e-158 555.1
Cla03g01476 CCT 7 374 MAP Kinase Kinase Gene Family AT5G56580 56.4 6.1e-116 414.5
Cla11g00151 CCT 1 308 MAP Kinase Kinase Gene Family AT5G56580 55.2 1.7e-94 343.2
Cla04g01028 . 1 219 MAP Kinase Kinase Gene Family AT1G18350 70.5 1.1e-86 317.0
Cla04g01028 . 1 203 MAP Kinase Kinase Gene Family AT3G06230 58.0 1.8e-65 246.5
Cla04g01028 . 1 215 MAP Kinase Kinase Gene Family AT1G73500 72.2 2.3e-90 329.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011011 1 1 0 0 0 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80508 PF00069 Pkinase 3.10E-53 CL0016 Cla PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla04g01028 Cla_Chr04 FPKM 0.0 0.0 0.358964 0.0 1.106174 0.877988 1.204941 1.600518 1.898777 1.328403