Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01033 ATGGGAAGACTGAGAGCTAAAACCGACTACGAAGATCTCAGAAACGCTCGCATTTTAGAGAATAAGGAGCGATTGGCATCGCTAGGGTTGAAGAAGACAGTATCCGAACTTCGTTCCATTATTACCTCTGCAAAATGGGAAAAAAACCACGCGAGAAAATGTCGCCACACGCTCTCCCGGATTTCTCTTCCTCTTCGTCGTTCCGATCGATTGAAGCAGATTTCACCGGACTCCACTCCAGTGCGTGTCCAGGTTTCCTTCCGGAGGTCCAACAGATTGAAGGGGAAATCAGTTCGCAGTCTCAAATTCGAGTGTAATGAAGTGGGGGAAGAGATTATGAAGAGGCCTGCGAATTTTCCTTTAGTGGAAATCAGTGATTTGGAACATCGGATTTCGCCGGACGTTTCGGCACGGAGGTGTAATAGCAAGGGACGAGGGAGTGTTTATGATCCTGTTTTTGGAATCTGCTGCCATTTCTGCAGGCAGAAGAAGCTATGCGGTGAAGAAGATTGCAGGAGATGTGGCGATTTCGATATGGATGAACCATGCATCGGAAAAACTGATTGCTCTGTTTGTCATTCCTCCAATGGTGTCTTTTGCCGAGCTTGTCTAAAGGTCAGATATGGCGAAGAAATGGAAGAAGTAATTGCGAACAAGAAATGGATGTGCCCTCATTGCGTGGAGGAGAAAGGAATCAACCCTTATTGGATATGCAACAGTTCATTGTGCTTGAAGAAGCGCAAAATGGCTCCAACTGGGCTTGCCATTTACAGAGCTCGGGAAATGGGATACGAATCTGTTGCACATTTGTTAATGGATGAGCTCAGGCGAGCAGATTTATGCAACAGGAACGATTAA 858 46.15 MGRLRAKTDYEDLRNARILENKERLASLGLKKTVSELRSIITSAKWEKNHARKCRHTLSRISLPLRRSDRLKQISPDSTPVRVQVSFRRSNRLKGKSVRSLKFECNEVGEEIMKRPANFPLVEISDLEHRISPDVSARRCNSKGRGSVYDPVFGICCHFCRQKKLCGEEDCRRCGDFDMDEPCIGKTDCSVCHSSNGVFCRACLKVRYGEEMEEVIANKKWMCPHCVEEKGINPYWICNSSLCLKKRKMAPTGLAIYRAREMGYESVAHLLMDELRRADLCNRND 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25471846 25484241 + ClCG04G010500.2 Cla04g01033 271261

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01033 285 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 149 271 IPR018866 -
Cla04g01033 285 PANTHER OS05G0300700 PROTEIN 1 280 IPR040221 GO:0006355
Cla04g01033 285 PANTHER EXPRESSED PROTEIN 1 280 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01033 K23408 CDCA7, CDCA7L, JPO1; cell division cycle-associated protein 7 - csv:101222698 493.812
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01033 Cla-Chr4:25471846 Cla09g01728 Cla-Chr9:34587199 7.03E-21 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g174 . . . . . . . . Cmo13g01014 . . . . . . Cpe20g00162 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed08g2771 . . Cma13g00980 . . . . . Bhi08g01315 Tan05g2171 Cmetu12g1926 Lac10g0301 Hepe07g2339 . . Cla04g01033 Cam04g1075 Cec01g1589 Cco01g1638 Clacu04g1103 Cmu04g1086 Cre01g1385 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012587 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 3 1 1 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla04g01033 Cla_Chr04 FPKM 3.097953 3.479831 4.764716 5.09287 14.223896 16.073614 15.372172 6.220178 6.087243 5.06937