Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01036 ATGGCAGTAGATGGCCGAAGAGGGCCAAACAGAAGCCTCGAGACCCTTCTCGACATCGACAAGAAGGCCGTTGCTGCAAGAACAGTAGCGCCAGCGCCGCAGCTACAAAAGTCGGTGCCAGGACAAGGCTTGGAATTCAACAACTTGTCATACAGTGTCTTAAAGAAGTATAAAAAAGATGGAGTTTGGATCAAAAGAGAAACTTATCTTTTGAATGACATCTCAGGACAGGCAATGCGAGGCGAAATCATGGCTATCTTGGGGCCAAGTGGTGCCGGGAAATCTACATTTCTTGATGCCTTGGCTGGTCGAATGGCGAAAGGAAGCCTCGAAGGATCGGTTAGGATCGATGGAAAGCCGGTGACTGCAAGTTATATGAAGATGGTTTCATCTTATGTTATGCAAGATGATCAACTCTTCCCAATGTTAACTGTGTTTGAGACCTTCATGTTTTCAGCTGAGGTTAGGCTTCCATCCTCTATTTCCAGGGAGGAGAAGAAGAATAGAGTTTATGAGCTTATTGATCAACTAGGTTTACAGAGTGCCATGCATACTTATATAGGTGATGAAGGGAGAAGAGGAGTTTCAGGAGGTGAACGAAGAAGGGTGTCTATAGGAATCGACATCATTCACAAACCATCTCTCTTATTTTTGGATGAGCCAACCTCAGGCCTTGATTCAACTAGTGCTTTCAGTGTAGTTGAGAAGGTGAAAGAGATTGCTCGAAATGGCAGTATTGTCTTAATGACAATTCATCAGCCTTCTTACAGAATTCAATTGCTACTTGATCGCATAACTGTTCTTGCCAGGGGAAAACTGATATATGTTGGAAGTCCATTAAACCTTTCTGCTCATCTCTCTGGATTCGGAAGGCCGGTACCGGATGGTGAAAATAGCATCGAATATCTATTGGATGTGATCAAGGAATATGATGAATCAACAGTGGGCTTGGAGCCTCTTGTTGCATACCAACGCCATGGCATCAAACCTGATCACATTGCAAAAACTCCTGTTCCGAAAACACCTCGAACTCCTTATAAAAAGACCACGGGGCCAGGCCCGGGACTGGGGCCAAAGTTCCTAAACCTTCGTAGTCAAGCATTCTCTATGACCTCAGGGCCTAACTCAAGCCAGTTTGATTCTGCATATGCATATGAAGACAATGAGGATGATGAATTTGATAGATCTCTTGAACGTAAATCTACCAAAACTTCAGTGAATAATCGTAGCGGTGTTCATAATCCTCGTTTAGCTTCTGAATTTTACAAAGATTTGTCTGTTTGGGTGTATAATGGTGTTAAAAGAACTCCTCATCGATACCCATCATGGACTCCGGCAAGAACGCCAGGACAAACACCAGCAAAAACTCCTATGTCTGGAGTTAGAAGTGGAATGGTTTCAAGCCATATATCATCATCTCATGCCAAAATACCTTCGGTCTTCAGCATGTCAATGGACTCTCATTTGCCTTCTTTCCAAGACTTCGAAATTGAGGATGTTCTCGACGAGCCGGACCATGGTCCTAAATATGCAAATCCTTGGCTTCGTGAGGTCATTGTGCTTTCGTGGAGAACAATGCTCAATGTGGTCCGCACCCCAGAATTGTTTCTGTCGAGGGAGATTGTTTTGACAGTAATGGCATTGATTCTCTCCTCCATGTTCAAAAACCTCAGTCATGCTTCCTTTAGAGACATCAACAGGCTTCTCAACTTCTACATCTTTGCAGTTTGTCTCGTTTTCTTTTCATCAAACGATGCCGTCCCAACATTCATTCAAGAAAGGTTCATCTTCATTAGAGAGACTTCTCACAATGCATATCGAGCATCGTCCTATGTCATCTCCTCCCTCATTGTTTATCTCCCATTTTTTGCCATTCAAGGCTTCACATTTGCTGCCATAACACAATTCTGGCTTCACTTGAAAAGCAACCTCTTCTTTTTCTGGATCACACTCTTTGCTTCACTCATTACAACGAATGCATACGTTATGCTTGTGAGCGCTCTCGTACCGAGTTATATCACAGGCTATGCAGTAGTTATCGCCACGACAGCCATTTTCTTCCTCACTTGTGGGTTCTTCTTGAAACGAACTCAAATACCAGTATATTGGAGGTGGCTCCATTACATCTCTGCAATAAAGTATCCATTTGAATCATTGTTGATCAATGAGTTCAAAGGTAAAAGATGCTATCAAGGCAATCCCAATGATCTTTCACCTGGACCTTTGGGAGATGTAAGGTTTAGCAGGTTGCACAATGTTTCCACCGATTTGAAACCCGGCTGCTTGCTGATCGGAGAAGACGTTTTGTTCTCAATGGACATTAATATGGAAAATATATGGTATGACATTGTGATCCTACTAGCGTGGGGAGCTCTTTACCGGCTGTTCTTCTATCTGGTTCTTAGATTTTACTCTAAGAATGAGAGAAAATGA 2433 42.99 MAVDGRRGPNRSLETLLDIDKKAVAARTVAPAPQLQKSVPGQGLEFNNLSYSVLKKYKKDGVWIKRETYLLNDISGQAMRGEIMAILGPSGAGKSTFLDALAGRMAKGSLEGSVRIDGKPVTASYMKMVSSYVMQDDQLFPMLTVFETFMFSAEVRLPSSISREEKKNRVYELIDQLGLQSAMHTYIGDEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAFSVVEKVKEIARNGSIVLMTIHQPSYRIQLLLDRITVLARGKLIYVGSPLNLSAHLSGFGRPVPDGENSIEYLLDVIKEYDESTVGLEPLVAYQRHGIKPDHIAKTPVPKTPRTPYKKTTGPGPGLGPKFLNLRSQAFSMTSGPNSSQFDSAYAYEDNEDDEFDRSLERKSTKTSVNNRSGVHNPRLASEFYKDLSVWVYNGVKRTPHRYPSWTPARTPGQTPAKTPMSGVRSGMVSSHISSSHAKIPSVFSMSMDSHLPSFQDFEIEDVLDEPDHGPKYANPWLREVIVLSWRTMLNVVRTPELFLSREIVLTVMALILSSMFKNLSHASFRDINRLLNFYIFAVCLVFFSSNDAVPTFIQERFIFIRETSHNAYRASSYVISSLIVYLPFFAIQGFTFAAITQFWLHLKSNLFFFWITLFASLITTNAYVMLVSALVPSYITGYAVVIATTAIFFLTCGFFLKRTQIPVYWRWLHYISAIKYPFESLLINEFKGKRCYQGNPNDLSPGPLGDVRFSRLHNVSTDLKPGCLLIGEDVLFSMDINMENIWYDIVILLAWGALYRLFFYLVLRFYSKNERK 810
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25528947 25532665 - ClCG04G010530.2 Cla04g01036 271264

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01036 810 Pfam ABC-2 type transporter 517 724 IPR013525 GO:0016020|GO:0140359
Cla04g01036 810 MobiDBLite consensus disorder prediction 390 411 - -
Cla04g01036 810 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 44 295 IPR003439 GO:0005524
Cla04g01036 810 MobiDBLite consensus disorder prediction 445 465 - -
Cla04g01036 810 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 5 804 - -
Cla04g01036 810 Pfam ABC transporter 71 223 IPR003439 GO:0005524
Cla04g01036 810 SMART AAA_5 80 280 IPR003593 -
Cla04g01036 810 MobiDBLite consensus disorder prediction 441 465 - -
Cla04g01036 810 Gene3D - 43 289 IPR027417 -
Cla04g01036 810 CDD ABCG_EPDR 41 277 - -
Cla04g01036 810 ProSitePatterns ABC transporters family signature. 195 209 IPR017871 GO:0005524
Cla04g01036 810 MobiDBLite consensus disorder prediction 332 358 - -
Cla04g01036 810 PANTHER ABC TRANSPORTER 5 804 - -
Cla04g01036 810 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 45 285 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01036 K05681 ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2 - csv:101210003 1460.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01778 Cla-Chr1:32739924 Cla04g01036 Cla-Chr4:25528947 0 dispersed
Cla04g01036 Cla-Chr4:25528947 Cla09g01975 Cla-Chr9:37354673 7.59E-60 dispersed
Cla04g01036 Cla-Chr4:25528947 Cla10g01971 Cla-Chr10:35550298 1.14E-50 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g185 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe15g00180 . . . . . . . . Car18g00069 Cpe09g01109 . Bhi08g01311 . . . . . . Cla04g01036 Cam04g1078 Cec01g1592 Cco01g1641 Clacu04g1106 Cmu04g1089 Cre01g1390 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012739 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla04g01036 Cla_Chr04 FPKM 4.921761 5.550778 1.621634 1.332719 0.514226 0.0 0.340689 2.322483 2.649553 1.682765