Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01042 ATGCAACTGCAAACTCGCAGACTTCAGTTAATTTTCCTAATTTTATGTCTGTGTTCTCTCTTCATCAACGCCCGTCCCTTTCTCATCGTCATCTCTCAAGATGACCTCAAGGATGGTGTCCCGCCGGAAGATTCCTCCGATTCCGCCAACTCCGACTCCGCCGAGTGGGACGAGTTCGGGGAACCTGAATCTCAAAACTCCGCCCTCGAGCTTGACCCCGGTTCTTGGCGCCCCATTTTTGAACCGGATTCCCCCGCCTCCACCTCCGACCCCGACGCGACCGAGGATCTGTACTACACTGCTGTAGGGAAAATGATGTCCGCGGTCAGTTCCGGTGACCTGAGGTTGATGGAGGATGCGGTAGCGGATATTGATCAAGCTGCTGCGGAGAATGGGGATCCGCACGCGCAATCGGTTCTAGGGTTATTGTATGGAATGGGGATAATGAAGGAAACCAATAAGGCTAAGGCGTTTATGTATCACCATTTTGCCGCTGAAGGGAATAAGCAATCTAAGATGGCTCTTGCTTATATTTACTTCAGGCAAGAAATATATGACAAAGCAGTCAAGCTTTATGCTGAATTAGCAGAGGTAGCCATTAATAGTTTATTAGTTTCCAAGGATTCTCCAGTAATTGAACCTGTGAGAATCCATAATGGAGCTGAGGAGAACAAGCAGGCCTTGAGAAAGTCTCGAGGAGAAGAAGATGAGGACTTCCAAATTTTGGAATATCAGGCGCAGAAGGGTAATGCTGGAGCTATGTATAGAATTGGGCTATTTTACTACTTTGGACTCAGAGGATTGAGGCGTGATCATGCAAAAGCATTGTCCTGGTTTTCCAAGGCCGTGGAGAAAGGAGAACCAAAGTCAATGGAATTACTTGGAGAGATATATGCAAGGGGGGCCGGAGTAGAAAGGGATTATACTAAGGCACTTCAATGGCTAACTCGTGCATCCAAGCAGCCGTCATTTACTGCTTATAATGGCATGGGATATTTATACGTTAAGGGTTATGGAGTGGAGAAAAACTATACCAAGGCCAAGGAGTACTTTGAGAAAGCTGCCGAAAACGATGAGTCTGGTGGTCATTATAATCTAGGAGTTATGTATCTTAAAGGCATTGGAGTAAAGAGAGATGTGAAGAAGGCGTGTACTCATTTTATAATGGCTGCAAATGCTGGACAACCAAAGGCATTCTACCAGCTAGCAAAGATGTTTCATACGGGTGTTGGGCTCAAGAGGAATATTCCTATGGCTAGTGCATTATACAAATTAGTTGCTGAACGAGGTCCTTGGAGTTCATTGTCTAGATGGGCATTGGAATCATATCTGAAAAGTGATATTGGCAAGGCATTCTTCTTGTACGCAAGAATGGCCGAGCTAGGATATGAGGTGGCACAAAGCAATGCAGCATGGATACTTGATAAATATGGAGAACAAAGCATGTGTCTGGGAGAATCTGGCTTTTGCACGGATGCAGAAAGACACCAGAGAGCTCATTCTCTTTGGTGGCAAGCTTCTGAGCAGGGCAATGAACATGCTGCTTTACTGATTGGGGATGCATATTACTACGGTCGGGGAACTGACGTAGATTATGATCGTGCTGCGGAAGCATACATGCATGCCAAATCCCAACTAAATGCACAAGCTATGTTCAACCTTGGTTACATGCATGAACATGGTCTAGGCCTTCCATTTGATCTCCACTTAGCCAAGCGGTACTATGACCAAGCTCTGGAACTTGATCCAGCTGCCAGGCTGCCTGTCAAGCTGGCCTTAGTAAGCCTGTGGTTAAGGAAGAATCATGCTGACAGTTTTCTGGTCCATGTGATTGATTCGTTGCCAGAAGTGTATCCAAAAGTTGATGCATGGGTAGAGGATGTACTGTTGGAGGAAGGAAATGCAACAATCCTAACTTTATTTGCTTGCCTACTCACTGTCCTATATCTTAGAGAGCGACAACGGAGGCATGCAGCTGTTCGGGCGGCGGCTGCTGCTGCTGCTGCTGAGGCTGTGCCACTCCATCCAAATGACCATGTGCCTCCACAAAATTAA 2055 46.37 MQLQTRRLQLIFLILCLCSLFINARPFLIVISQDDLKDGVPPEDSSDSANSDSAEWDEFGEPESQNSALELDPGSWRPIFEPDSPASTSDPDATEDLYYTAVGKMMSAVSSGDLRLMEDAVADIDQAAAENGDPHAQSVLGLLYGMGIMKETNKAKAFMYHHFAAEGNKQSKMALAYIYFRQEIYDKAVKLYAELAEVAINSLLVSKDSPVIEPVRIHNGAEENKQALRKSRGEEDEDFQILEYQAQKGNAGAMYRIGLFYYFGLRGLRRDHAKALSWFSKAVEKGEPKSMELLGEIYARGAGVERDYTKALQWLTRASKQPSFTAYNGMGYLYVKGYGVEKNYTKAKEYFEKAAENDESGGHYNLGVMYLKGIGVKRDVKKACTHFIMAANAGQPKAFYQLAKMFHTGVGLKRNIPMASALYKLVAERGPWSSLSRWALESYLKSDIGKAFFLYARMAELGYEVAQSNAAWILDKYGEQSMCLGESGFCTDAERHQRAHSLWWQASEQGNEHAALLIGDAYYYGRGTDVDYDRAAEAYMHAKSQLNAQAMFNLGYMHEHGLGLPFDLHLAKRYYDQALELDPAARLPVKLALVSLWLRKNHADSFLVHVIDSLPEVYPKVDAWVEDVLLEEGNATILTLFACLLTVLYLRERQRRHAAVRAAAAAAAAEAVPLHPNDHVPPQN 684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25586608 25591009 + ClCG04G010600.1 Cla04g01042 271270

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01042 684 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 4 663 IPR044623 GO:0030433
Cla04g01042 684 SUPERFAMILY HCP-like 443 584 - -
Cla04g01042 684 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 4 663 - -
Cla04g01042 684 SUPERFAMILY HCP-like 126 197 - -
Cla04g01042 684 Pfam Sel1 repeat 252 286 IPR006597 -
Cla04g01042 684 Pfam Sel1 repeat 445 463 IPR006597 -
Cla04g01042 684 Pfam Sel1 repeat 548 582 IPR006597 -
Cla04g01042 684 Pfam Sel1 repeat 134 167 IPR006597 -
Cla04g01042 684 Pfam Sel1 repeat 289 322 IPR006597 -
Cla04g01042 684 Pfam Sel1 repeat 400 430 IPR006597 -
Cla04g01042 684 Pfam Sel1 repeat 514 536 IPR006597 -
Cla04g01042 684 Pfam Sel1 repeat 363 394 IPR006597 -
Cla04g01042 684 Pfam Sel1 repeat 326 358 IPR006597 -
Cla04g01042 684 SUPERFAMILY HCP-like 232 367 - -
Cla04g01042 684 MobiDBLite consensus disorder prediction 38 93 - -
Cla04g01042 684 SUPERFAMILY HCP-like 337 471 - -
Cla04g01042 684 SMART sel1 324 359 IPR006597 -
Cla04g01042 684 SMART sel1 548 583 IPR006597 -
Cla04g01042 684 SMART sel1 251 287 IPR006597 -
Cla04g01042 684 SMART sel1 134 169 IPR006597 -
Cla04g01042 684 SMART sel1 360 395 IPR006597 -
Cla04g01042 684 SMART sel1 288 323 IPR006597 -
Cla04g01042 684 SMART sel1 396 431 IPR006597 -
Cla04g01042 684 SMART sel1 512 547 IPR006597 -
Cla04g01042 684 Gene3D Tetratricopeptide repeat domain 227 603 IPR011990 GO:0005515
Cla04g01042 684 Gene3D Tetratricopeptide repeat domain 83 198 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01042 K14026 SEL1, SEL1L; SEL1 protein - csv:101221047 1286.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01042 Cla-Chr4:25586608 Cla08g01730 Cla-Chr8:29823350 1.29E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g193 . . Bda06g00823 . . . . Bma12g01247 Cmo13g01021 Cmo18g00058 . . . . . Cpe20g00156 . . . . . . . . . . . . . . . . . . Cone19ag0338 Lsi02g00238 Csa01g00719 Chy12g01393 Cme12g01827 . Blo15g00056 . . Bpe07g01051 . . . Sed08g2761 . . Cma13g00986 Cma18g00076 Car13g00822 Car18g00067 Cpe09g01111 . Bhi08g01299 Tan05g2186 Cmetu12g0492 . Hepe07g2351 . . Cla04g01042 Cam04g1087 Cec01g1600 Cco01g1648 Clacu04g1113 Cmu04g1096 Cre01g1395 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006564 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla04g01042 Cla_Chr04 FPKM 39.494251 45.055649 18.335941 19.069702 9.832378 10.277567 10.675627 24.759628 21.555956 24.418962