Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01048 ATGCGTGAGATTCTGCACATTCAAGGAGGGCAATGTGGGAACCAAATTGGGTCGAAGTTCTGGGAGGTGGTCTGCGACGAGCACGGCATCGACCCGACCGGCAGGTACGTGCCGAGGGCGGTGCTGATGGACCTCGAACCGGGAACAATGGATGCCGTTAGGACGGGACCATACGGGCAGATTTTCCGACCAGATAACTTCGTGTTCGGGCAATCTGGAGCAGGCAACAATTGGGCTAAAGGCCATTACACAGAAGGTGCAGAGCTTATTGATTCAGTGCTTGATGTTGTGAGGAAAGAAGCTGAGAATTGTGATTCACTTCAGGGTGGAACAGGATCAGGAATGGGGACTCTTCTAATCTCCAAGATCAGGGAAGAATATCCAGATAGAATGATGTTGACTTTCTCAGTGTTTCCATCTCCAAAGGTGTCAGACACTGTTGTAGAGCCATATAATGCTACTCTTTCAGTTCATCAACTGGTAGAGAACGCTGATGAGTGTATGGTTCTTGACAATGAAGCACTCTATGATATTTGTTTTAGGACTCTCAAACTCACAACCCCAAGTTGTAAATTCCCTGGCCAACTGAATTCCGACCTCCGAAAACTGGCTGTGAACTTAATCCCTTTCCCACGACTCCACTTCTTCATGGTCGGATTCGCACCTCTAACTTCTCGTGGATCGCAGCAATACAGAGCGCTAACTGTTCCTGAACTGACACAACAAATGTGGGATGCTAAGAACATGATGTGTGCAGCCGATCCACGCCATGGTCGATATCTTACAGCGTCGGCTATGTTTCGAGGTAAAATGAGTACAAAAGAAGTCGACGAGCAGATGATGAATGTGCAGAACAAAAACTCTTCTTATTTTGTAGAATGGATTCCAAACAATGTGAAATCTAGTGTTTGTGACATTCCACCTAAAGGATTCCCATTGGCTTCCACTTTTGTTGGAAACTCAACTTCAATACAAGAGATGTTTAGAAGAGTGAGTGAGCAATTCACAGCCATGTTTAGAAGGAAGGCCTTCTTGCATTGGTATACTGGAGAGGGAATGGATGAGATGGAGTTTACTGAAGCAGAAAGCAACATGAATGATCTTGTTGCTGAATATCAACAATATCAAGATGCCACAGCTGATGAAGACATTGACTATGAAGATGATGTTGGGGATGTTGAAAATTGA 1188 45.12 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVPRAVLMDLEPGTMDAVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDSLQGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSCKFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSSVCDIPPKGFPLASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADEDIDYEDDVGDVEN 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25669968 25672344 - ClCG04G010650.1 Cla04g01048 271276

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01048 395 Pfam Tubulin/FtsZ family, GTPase domain 3 179 IPR003008 GO:0005525
Cla04g01048 395 Gene3D Helix hairpin bin 324 380 IPR023123 -
Cla04g01048 395 PRINTS Beta-tubulin signature 362 380 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cla04g01048 395 PRINTS Beta-tubulin signature 180 192 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cla04g01048 395 PRINTS Beta-tubulin signature 65 76 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cla04g01048 395 PRINTS Beta-tubulin signature 327 338 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cla04g01048 395 PRINTS Beta-tubulin signature 85 103 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cla04g01048 395 Coils Coil 358 378 - -
Cla04g01048 395 Pfam Tubulin C-terminal domain 211 332 IPR018316 -
Cla04g01048 395 SUPERFAMILY Tubulin C-terminal domain-like 194 379 IPR008280 -
Cla04g01048 395 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 193 IPR036525 -
Cla04g01048 395 PANTHER TUBULIN BETA-6 CHAIN 1 36 - -
Cla04g01048 395 PANTHER TUBULIN BETA-6 CHAIN 33 386 - -
Cla04g01048 395 ProSitePatterns Tubulin-beta mRNA autoregulation signal. 1 4 IPR013838 -
Cla04g01048 395 SMART Tubulin_4 21 212 IPR003008 GO:0005525
Cla04g01048 395 CDD beta_tubulin 2 376 - -
Cla04g01048 395 Gene3D - 213 323 IPR037103 -
Cla04g01048 395 PRINTS Tubulin signature 100 118 IPR000217 GO:0005874|GO:0007017
Cla04g01048 395 PRINTS Tubulin signature 28 47 IPR000217 GO:0005874|GO:0007017
Cla04g01048 395 PRINTS Tubulin signature 158 178 IPR000217 GO:0005874|GO:0007017
Cla04g01048 395 PRINTS Tubulin signature 144 157 IPR000217 GO:0005874|GO:0007017
Cla04g01048 395 PRINTS Tubulin signature 320 348 IPR000217 GO:0005874|GO:0007017
Cla04g01048 395 PRINTS Tubulin signature 119 140 IPR000217 GO:0005874|GO:0007017
Cla04g01048 395 Gene3D Tubulin/FtsZ, GTPase domain 1 212 IPR036525 -
Cla04g01048 395 PANTHER TUBULIN 1 36 IPR000217 GO:0005874|GO:0007017
Cla04g01048 395 PANTHER TUBULIN 33 386 IPR000217 GO:0005874|GO:0007017
Cla04g01048 395 SMART Tubulin_C_4 196 333 IPR018316 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01048 K07375 TUBB; tubulin beta - csv:101220108 758.829
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01048 Cla-Chr4:25669968 Cla08g01419 Cla-Chr8:27071877 0 dispersed
Cla04g01048 Cla-Chr4:25669968 Cla10g02057 Cla-Chr10:36298518 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g211 . . . . Bpe12g00705 . . . Cmo13g01028 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00231 Csa01g00713 Chy12g01398 Cme12g01832 . . . . . . . . . . . . . . . . . Bhi08g01291 Tan05g2194 Cmetu12g0801 Lac10g0288 . . . Cla04g01048 Cam04g1092 Cec01g1607 Cco01g1653 Clacu04g1118 Cmu04g1102 Cre01g1401 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000127 7 8 7 13 9 7 3 7 7 7 7 7 11 7 7 12 6 15 3 7 7 7 6 8 1 6 8 9 9 2 220
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla04g01048 Cla_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.273999 0.168664 0.248368