Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01050 ATGTGGATGATGGGTTACAATGACGCTACAGATTTGAACTTCCCTTCCGATAACTCTTTCAATTCTCGCAAACTTAGACCTCTAATTCCTCGCCCTCTCTCTTCTTCTTCCTCTTCCTCCATTAACAATCTCATCCCCACCAACGATTTCTTCTCCCAATTTCATCACATGGCGACGGTGACGGATCAAAGTAAGAGAGAGTTGAACAATGTGTCGTCGTTGTCACCGCCTGTGGTGGTGAGCTCGCGGTGGAATCCGACGCCTGAGCAGTTGAGAGTGTTGGAGGAATTGTATCGGCGGGGGACTCGAACCCCCTCTGCCGATCAAATTCAACATATCACTGCTCAGCTTCGTCGTTACGGTAAGATTGAAGGTAAGAATGTGTTCTATTGGTTTCAAAATCATAAAGCTAGAGAACGGCAGAAACGTCGTCGTCAGATGGAATCCGCCATCACTGCCGCCGACCTCTCTACTCGCGACGCCGAAATCCTAGAAAGGAAAGATTCAGGGTCGGGCAGAACAGTGTATGAAGAACAGACCAAAAACTGGGTGCCCTCTACAAACTGCAGTACACTTCCGGAGGAATCTGTTCCAATTCAAAGGGCGGCAAAAGGTAGTGTAATTGGAGGAGCAGATTGCAGAACAGAAAATGGATGGATTCAATTCGAGGAATTGCGCCAAATAAGGAATAACAACACCAACAACTTTGCTGAAAAAAATACCAATAACATCAACAATATTAACAATTCAGCCTCCTTACAATTGATGCATTGTCCGGCAGCCGCTCTACGTGGTGGCGGTGGCGGCGGCGGCGGCGGCGGCAGCCAACTAATGATGAACATTGCCCCCATCACTACCACAGCCACAGTGACAACAATAATGCACCCAAAATCTCATAGAAGAAGTAATATTTCAGGTAATTTTAATATAATTGGAGCCTACACTCAAAATGGGGTTGAAGAATTGGAAGAAATAGAAGAAGAATTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGGAGGAGGAGGAGGAGGAGGGTGTGGGGAATCTGAAACCCTACAACTTTTTCCATTGTGCAGTGACACAAGAAATGGTGAGACTATTGGTGGCCAAAATGGGTGTGAAACAGTGGAAAATTCAGCCATGAATAGTACTAATCTGACTCCACTTCAGTTCTTTGAATTCCTTCCATTGAAGAATTGA 1203 45.39 MWMMGYNDATDLNFPSDNSFNSRKLRPLIPRPLSSSSSSSINNLIPTNDFFSQFHHMATVTDQSKRELNNVSSLSPPVVVSSRWNPTPEQLRVLEELYRRGTRTPSADQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKRRRQMESAITAADLSTRDAEILERKDSGSGRTVYEEQTKNWVPSTNCSTLPEESVPIQRAAKGSVIGGADCRTENGWIQFEELRQIRNNNTNNFAEKNTNNINNINNSASLQLMHCPAAALRGGGGGGGGGGSQLMMNIAPITTTATVTTIMHPKSHRRSNISGNFNIIGAYTQNGVEELEEIEEELEEEEEEEEEGGGGGGGGCGESETLQLFPLCSDTRNGETIGGQNGCETVENSAMNSTNLTPLQFFEFLPLKN 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25683936 25687295 + ClCG04G010670.1 Cla04g01050 271278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01050 400 Pfam Homeodomain 82 141 IPR001356 GO:0003677
Cla04g01050 400 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 35 400 - -
Cla04g01050 400 MobiDBLite consensus disorder prediction 325 340 - -
Cla04g01050 400 CDD homeodomain 83 143 IPR001356 GO:0003677
Cla04g01050 400 SUPERFAMILY Homeodomain-like 81 148 IPR009057 -
Cla04g01050 400 Coils Coil 315 342 - -
Cla04g01050 400 Gene3D - 81 148 - -
Cla04g01050 400 ProSiteProfiles 'Homeobox' domain profile. 87 142 IPR001356 GO:0003677
Cla04g01050 400 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 35 400 IPR044555 GO:0003700|GO:0099402
Cla04g01050 400 SMART HOX_1 79 146 IPR001356 GO:0003677
Cla04g01050 400 MobiDBLite consensus disorder prediction 325 348 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla04g01050 Cla06g01422 CCT
Cla04g01050 Cla06g01422 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02000 Cla-Chr2:34986683 Cla04g01050 Cla-Chr4:25683936 7.45E-29 dispersed
Cla03g00155 Cla-Chr3:1624483 Cla04g01050 Cla-Chr4:25683936 1.63E-29 dispersed
Cla04g01050 Cla-Chr4:25683936 Cla11g00606 Cla-Chr11:6883719 2.72E-27 dispersed
Cla10g01625 Cla-Chr10:31872828 Cla04g01050 Cla-Chr4:25683936 1.37E-14 dispersed
Cla01g01974 Cla-Chr1:34366813 Cla04g01050 Cla-Chr4:25683936 2.09E-27 transposed
Cla01g02289 Cla-Chr1:36761774 Cla04g01050 Cla-Chr4:25683936 2.97E-16 transposed
Cla11g01830 Cla-Chr11:31948250 Cla04g01050 Cla-Chr4:25683936 5.15E-14 transposed
Cla08g01585 Cla-Chr8:28538973 Cla04g01050 Cla-Chr4:25683936 1.73E-28 transposed
Cla04g01050 Cla-Chr4:25683936 Cla06g01422 Cla-Chr6:27792731 4.19E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60934 PF00046 Homeodomain 1.60E-19 CL0123 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01050 - - csv:101209268 502.671