Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01054 ATGAAGAACCTCCTTAAGAAGTTCCACATCATGTCCAGTGGTCAGTCTGACGATGCAGCTGAAGGGTCTACTTCATCGAGGAGCAGTAAATTAATGGAGGTGTCTTCGCCTGATAAGCTGCCGTCTCGCTCCCGAACGACCCATTTCAATTCGGAGCATAAACCCTTCTCGGGGTTATCCGGTTGGTTGAACTCTGTTACAAATAGGCGTAGCCCCAGTCCTCCATCATCTTCCAATCCTACTGCAGGCGAGTTAATGGAGCCATCAGATTCAGTTTCTAGCAGAGATGCTGCAATGGATACATCTAGGCATGATTCAGGGTCGAGTAACTCGAGGGATCCTGATATAGAGGAAGAGTATCAGATACAGCTTGCTTTGGAACTGAGTGCTAGAGAGGATCCTGAGGCAGCTCAGATTGAGGCTGTGAAGCAGATTAGTTTGGGGTCATGTGATCCTGATAACACTCCAGCTGAAGTTATTGCCTTCAGATATTGGGTGGCTGCAACAGTAAATGAAAAAGGAAGTTCAGAAGCTTCTGGGTTGCATGGTTTTACTGGAGAGTTCCTCATAAATTCCAGAATATTACCGAATGGGACATTAAGGTCTTTTGCAGCTTTATTGGGGCATATCTGCGTAAATTACCTCTCATATGGAGATGTCATTGGGAGGTATTCCAGAAATGTTGCCATTTGGAGACTAACTGAAACAAGAATCTTGAGAGGATTAGATATGTGGAGAAATCATTTTCTATTAGGGAGCTTGATCTACTGCATGCCTATGTTTCATCCCAAGGAAAGTGGCTCTTATTGTAGAAGAAAAATGAGGAATTTCCTTTGGGATGGTAAAAACCAAGGGAAAATCAATCACCTAGATTTCAACATTACCTATAGAGATGGGGAATGGAGTTGCAAGATAGACTATTTGAGATTTATGCGTGCTTCACAGAATTACAATTCTCTTAGCTATGATGACAAGATCTTGGATGGCTTTTATGACCTATATGGAGTCTTCACTGAGTCCACCTCAGAAAGAATGCCTTCCCTAGTTGATCTGCAAGGAGCACCAATGTCTGACAGTGTCACTTGGGAAGCAGTTCTGATTAATAAAGCTGCTGATGCTAACTTGTTGAAACTTGAACAGACAGCATTGGAGATGGCTATCAAAATGGGGACGGAATCCCCAATTTCTGTAAATAGTTATTTGGTGCAGAAGCTTGCTGTTTTAGTTTCAGATCATATGGGGGGACCAGTAGGCGATCCTGAAAAGATGTTGAGAAAATGGCGAAATCTTAGTTACGGCTTGAAAGCAACCCTTGGCAGTATGGTTTTGCCTCTTGGCTCCCTTACTGTAGGGTTGGCCCGTCATCGTGCATTGTTATTCAAGCTTTTGGCAGATGGCGTGGGTATTCCTTGTAGGTTGGTGAAGGGACCACAGTACACAGGTTCTGATGATGTGGCGATGAACTTCGTAAAGATTGATGATGGAAGGGAGTACATTGTGGATTTAATGGCAGATCCTGGTGCACTTATTCCAGCTGATGTTGCTGGATCGCATGTAGAGTATGATGGATCCCCTTTTTCAGCCAGTCCACTTTCTAGAGATGTTGATTCTTCTCAGGCAGCATCTTCAAGCAGTGGGGTTGGCAGTTCACTAGAGGGAAATTCAGATTTTGGGATATCAGATAGGAAACCAAAGTTTCGGAATCTCAGTGCCACAAAGGAATATGATTCTCCCAATGTTGACAAGGGGCCATCACGTGATTTTGCTAGCAAATCAAATTATCCTGGCATGCACGTTAGATCACCTTCTTGGACTGAGGGTGTTAGTTCACCTGCAGTGCGCAGAATGAAAGTAAAGGATGTTTCACAATACATGATTGATGCTGCCAAAGAGAATCCACGGTTGGCTCAAAAGCTTCATGACGTGTTACTTGAAAGTGGTGTGGTTGCTCCCCCTAACTTGTTTACTGAGGCATACCCTGACCAAATAGATGTTATTGTTGAGTCTAAGTCACCAACGGAAGACAAGGATCAAAGTAGAAAGGTGCCTGGTCTCTGTGAAAGTGTAGATAAGAATGATCCTCGTCCAGCTAACTTTTTGCCTCCCTTGCCTCAGCCCAGAATGCATTCTAGAGCCAGCCCTACCCATGGCCAACAACTGCACCTTAAACCTCTGGAATTTAACCTTTCTCTCGATCCAAGAGAAGCAGCCGGACAACCTATAGCCTTACCTTTTGAGGTAACACCAGTGAAGTATGGGAGAAATGTACCTGTTGCTGCAGCAGCAGCAGCTGCCGCAGCTGTTGTTGCATCATCAATGGTGGTAGCTGCAGCAAAGAGTACCGATGCAAATCTTGAAATTCCTGTAGCAGCTGCTGCCACCGCCACTGCTGCTGCAGTGGTTGCAACAACTGCAGCAGTCAACAAGCAATATGAGCAGGTTGAGGCCGACGCTACTCTTTATGAGCTGCGTGGAAGTGGAGATAGGGAGCATGATGCTTGTGGAGAAAATTCAGAGGGTGAACGAATATCAGATAGATCAGTTGGTAACGAAAGCACAAAATCCGATATAACCCTTGATGATGTTGCAGAATGCGAGATCCCATGGGAAGAAATCTCCTTGGGAGAGCGTATTGGGCTTGGATCATATGGGGAGGTCTATCGTGGAGATTGGCATGGAACTGAGGTAGCTGTGAAGAGGTTTCTAGACCAGGACATTTCTGGCGAATCTCTTGAAGAATTCAAAAGTGAGGTTCGAATTATGAAAAGGCTTCGGCATCCGAATGTTGTTCTCTTCATGGGAGCTGTGACACGTGCTCCCCACCTTTCAATTGTTACAGAATTTCTTCCCAGAGGTAGCTTGTACAGGTTAATTCACCGTCCCAACAATCAATTAGATGAACGAAAGCGATTGAGGATGGCCCTTGATGCAGCTCGGGGAATGAATTATTTGCACAATTGCACACCTGTTGTTGTACATCGTGATTTGAAGTCCCCAAATCTACTTGTTGATAAAAATTGGGTTGTGAAGGTATGTGATTTTGGTTTATCTAAAATGAAGCATAGCACATTTCTTTCTTCAAGGTCAACGGCTGGAACTGCTGAGTGGATGGCTCCAGAAGTGCTGAGAAATGAACCTTCAGATGAAAAGTGCGACGTTTATAGTTATGGAGTCATACTATGGGAGCTGTCTACAATGCAACAACCATGGGGAGGAATGAACCCAATGCAAGTTGTTGGTGCTGTTGGCTTTCAGCATCGCCGTCTTGACATCCCAGACAATTTAGATCCTGCCATTGCCGACATTATTAGGAAATGCTGGCAAACAGATCCAAGATTAAGACCTTCATTTGCTGAGATTATGGCTGCGCTAAAGCCGCTGCAGAAGCCAATGTCGAGTTCTCAAGTACCGAGACCAAATGCTCCTGCAGGTAGTAGTCGTGACAAGGCTCGATTATTGCAAGTTGCTGAAGACCCATCAGGCTAG 3486 44.81 MKNLLKKFHIMSSGQSDDAAEGSTSSRSSKLMEVSSPDKLPSRSRTTHFNSEHKPFSGLSGWLNSVTNRRSPSPPSSSNPTAGELMEPSDSVSSRDAAMDTSRHDSGSSNSRDPDIEEEYQIQLALELSAREDPEAAQIEAVKQISLGSCDPDNTPAEVIAFRYWVAATVNEKGSSEASGLHGFTGEFLINSRILPNGTLRSFAALLGHICVNYLSYGDVIGRYSRNVAIWRLTETRILRGLDMWRNHFLLGSLIYCMPMFHPKESGSYCRRKMRNFLWDGKNQGKINHLDFNITYRDGEWSCKIDYLRFMRASQNYNSLSYDDKILDGFYDLYGVFTESTSERMPSLVDLQGAPMSDSVTWEAVLINKAADANLLKLEQTALEMAIKMGTESPISVNSYLVQKLAVLVSDHMGGPVGDPEKMLRKWRNLSYGLKATLGSMVLPLGSLTVGLARHRALLFKLLADGVGIPCRLVKGPQYTGSDDVAMNFVKIDDGREYIVDLMADPGALIPADVAGSHVEYDGSPFSASPLSRDVDSSQAASSSSGVGSSLEGNSDFGISDRKPKFRNLSATKEYDSPNVDKGPSRDFASKSNYPGMHVRSPSWTEGVSSPAVRRMKVKDVSQYMIDAAKENPRLAQKLHDVLLESGVVAPPNLFTEAYPDQIDVIVESKSPTEDKDQSRKVPGLCESVDKNDPRPANFLPPLPQPRMHSRASPTHGQQLHLKPLEFNLSLDPREAAGQPIALPFEVTPVKYGRNVPVAAAAAAAAAVVASSMVVAAAKSTDANLEIPVAAAATATAAAVVATTAAVNKQYEQVEADATLYELRGSGDREHDACGENSEGERISDRSVGNESTKSDITLDDVAECEIPWEEISLGERIGLGSYGEVYRGDWHGTEVAVKRFLDQDISGESLEEFKSEVRIMKRLRHPNVVLFMGAVTRAPHLSIVTEFLPRGSLYRLIHRPNNQLDERKRLRMALDAARGMNYLHNCTPVVVHRDLKSPNLLVDKNWVVKVCDFGLSKMKHSTFLSSRSTAGTAEWMAPEVLRNEPSDEKCDVYSYGVILWELSTMQQPWGGMNPMQVVGAVGFQHRRLDIPDNLDPAIADIIRKCWQTDPRLRPSFAEIMAALKPLQKPMSSSQVPRPNAPAGSSRDKARLLQVAEDPSG 1161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25706443 25720727 - ClCG04G010710.2 Cla04g01054 271282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01054 1161 Gene3D Transferase(Phosphotransferase) domain 1 951 1136 - -
Cla04g01054 1161 PRINTS Tyrosine kinase catalytic domain signature 1032 1042 IPR001245 GO:0004672|GO:0006468
Cla04g01054 1161 PRINTS Tyrosine kinase catalytic domain signature 985 1003 IPR001245 GO:0004672|GO:0006468
Cla04g01054 1161 PRINTS Tyrosine kinase catalytic domain signature 1051 1073 IPR001245 GO:0004672|GO:0006468
Cla04g01054 1161 PRINTS Tyrosine kinase catalytic domain signature 1095 1117 IPR001245 GO:0004672|GO:0006468
Cla04g01054 1161 PRINTS Tyrosine kinase catalytic domain signature 946 959 IPR001245 GO:0004672|GO:0006468
Cla04g01054 1161 MobiDBLite consensus disorder prediction 827 853 - -
Cla04g01054 1161 MobiDBLite consensus disorder prediction 51 88 - -
Cla04g01054 1161 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 1 166 - -
Cla04g01054 1161 MobiDBLite consensus disorder prediction 97 116 - -
Cla04g01054 1161 MobiDBLite consensus disorder prediction 670 688 - -
Cla04g01054 1161 MobiDBLite consensus disorder prediction 530 556 - -
Cla04g01054 1161 MobiDBLite consensus disorder prediction 1128 1161 - -
Cla04g01054 1161 Pfam Ethylene-responsive protein kinase Le-CTR1 316 510 - -
Cla04g01054 1161 ProSitePatterns Protein kinases ATP-binding region signature. 878 899 IPR017441 GO:0005524
Cla04g01054 1161 MobiDBLite consensus disorder prediction 1 116 - -
Cla04g01054 1161 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 316 1159 - -
Cla04g01054 1161 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 1 166 - -
Cla04g01054 1161 MobiDBLite consensus disorder prediction 16 44 - -
Cla04g01054 1161 ProSiteProfiles Protein kinase domain profile. 872 1128 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g01054 1161 Gene3D Phosphorylase Kinase; domain 1 865 949 - -
Cla04g01054 1161 MobiDBLite consensus disorder prediction 670 718 - -
Cla04g01054 1161 CDD STKc_MAP3K-like 878 1124 - -
Cla04g01054 1161 ProSitePatterns Serine/Threonine protein kinases active-site signature. 991 1003 IPR008271 GO:0004672|GO:0006468
Cla04g01054 1161 MobiDBLite consensus disorder prediction 528 607 - -
Cla04g01054 1161 Pfam Protein tyrosine and serine/threonine kinase 873 1124 IPR001245 GO:0004672|GO:0006468
Cla04g01054 1161 SUPERFAMILY Protein kinase-like (PK-like) 853 1122 IPR011009 -
Cla04g01054 1161 SMART serkin_6 872 1127 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g01054 1161 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 316 1159 - -
Cla04g01054 1161 MobiDBLite consensus disorder prediction 827 849 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01054 Cla-Chr4:25706443 Cla05g01828 Cla-Chr5:30182438 2.62E-06 dispersed
Cla04g01054 Cla-Chr4:25706443 Cla04g00964 Cla-Chr4:24754951 5.03E-29 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80510 PF07714 PK_Tyr_Ser-Thr 6.80E-67 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01054 - - csv:101209024 1581.62