Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01057 ATGACAATGAAGAGCCTCAGCCAGCAGTGTGGGATGATGCTATTACTTGTCATATTCATAAACGTCCTCCTTGTTGGTTTTGTGCCATTCACCTTCGCTTCTCCTGTCATTCGACGCTTTCAGTTTAATGTGGAGTGGAAGAAGGTAACAAGATTGTGCCATACAAAGCAACTTCTAACTGTGAATGGACAGTATCCAGGGCCAACCATTGCAGTTCATGAAGGTGATACAGTTGAAATCAAGGTCAATAATTGCATAAATGAAAACACAACTATTCATTGGCATGGGGTGAAGCAATTAAGAACAGGATGGGCAGATGGTCCAGCTTATATAACACAGTGCCCTATCAGAACAGGAGAATCATACACATACAAATTCTCAGTGATTGACCAGAGAGGGACATTGTGGTGGCACGCACATTACTCATGGCAACGTGCCTCTGTGCATGGTGCCTTCATCATTTACCCTCGCATGCCTTACCCATTTTCCACTTTTCCAATTGAAGCTGGGATTCCCCTTATCTTTGGTGAATGGTGGAATGGAGATGTGGAAGAAGTTGAAAAGGAGACGTTGAAATCTGGAGGTGGACCTAACAATTCTGATGCCTATACCATAAATGGCTTGCCAGGACCTCTTTATCCTTGCTCTAGCAAACATACATTCATTTCAACAGTAGAAAGGGGAAAAACTTACCTGCTGAGAGTAATTAATGGAGCACTCAACAATGAACTCTTCTTTGCCATAGCCAACCATACATTAACAGTGGTGGAGATTGATGCTGCATACACAAAACCCTTCAATACCACAGCCATTATGATAGCTCCTGGCCAAACCACCACTCTTCTGCTCAATACAGATCAAATTCAAATTCCAGACCACTCCTCTGGAATCCTCTTCCCAATGGCCATCTCGCCTTATGTAACTTCAATTTTCCCCTTCAACAACTCCACCTCCATTGGATTCTTAAGATACAATAGCAGGAAAATGAATAAACTTCGCTCACAAACAAATTTCCCATCTAATCAAATACCTGTAAACCTCCCTGATATGAAGGATACAGCCTTTGCCACTGCATTTTCCAACAAACTCCATAGCCTTGATTCTCCCCTGTATCCATGTAATGTTCCTAAAACAGTTAAGAAAAGAGTGTTTATCACCATAAGCCTCAATCTCCAGAACTGCCCATCTGGGAAAACCTGCAAGGGTTTGAATGGAAAGAGCTTTTTTGCTTCTATGAACAATCAATCCTTTATTCGACCTGATTCGTCCATATTGGAATCTCATTACAGAAAGATTGCTACCAATTCGTACTCCACTGATTTTCCACAAAGACCCATTAGGGTTTTTGACTACACTGGCGTAAACCCATTAACGAAAAACATGAACACGGAATCTGGGACTAAGCTTTTGGCTGTTCGATATGGAACAGATTTGGAAATCGTGTTTCAGGGTACGAATTTTTTGAATGCGGAGAATCATCCGATACATGTTCATGGGCACAATTTCTTCGTTGTGGGCAGGGGATTTGGGAATTTCAACGCCGCTAGGGATCCGGCGAAGTACAATCTGATCGATCCGCCGGAAAGAAACACGGTGGCGGTGCCGACGGGAGGGTGGGCGGCGATCAGAATTAGGGCGGATAATCCTGGAGTTTGGTTTATACATTGTCGTCTTGAAGAACATACTTCTTGGGGCCTTGCAATGGGACTCATAGTACGAAATGGAGCGGGGGATTCTAAATCTCTGCTTCCTCCTCCCGATGATCTTCCTCTTTGTTAA 1779 43.28 MTMKSLSQQCGMMLLLVIFINVLLVGFVPFTFASPVIRRFQFNVEWKKVTRLCHTKQLLTVNGQYPGPTIAVHEGDTVEIKVNNCINENTTIHWHGVKQLRTGWADGPAYITQCPIRTGESYTYKFSVIDQRGTLWWHAHYSWQRASVHGAFIIYPRMPYPFSTFPIEAGIPLIFGEWWNGDVEEVEKETLKSGGGPNNSDAYTINGLPGPLYPCSSKHTFISTVERGKTYLLRVINGALNNELFFAIANHTLTVVEIDAAYTKPFNTTAIMIAPGQTTTLLLNTDQIQIPDHSSGILFPMAISPYVTSIFPFNNSTSIGFLRYNSRKMNKLRSQTNFPSNQIPVNLPDMKDTAFATAFSNKLHSLDSPLYPCNVPKTVKKRVFITISLNLQNCPSGKTCKGLNGKSFFASMNNQSFIRPDSSILESHYRKIATNSYSTDFPQRPIRVFDYTGVNPLTKNMNTESGTKLLAVRYGTDLEIVFQGTNFLNAENHPIHVHGHNFFVVGRGFGNFNAARDPAKYNLIDPPERNTVAVPTGGWAAIRIRADNPGVWFIHCRLEEHTSWGLAMGLIVRNGAGDSKSLLPPPDDLPLC 592
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25741819 25745017 + ClCG04G010740.2 Cla04g01057 271285

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01057 592 CDD CuRO_3_LCC_plant 437 575 IPR034289 GO:0005507
Cla04g01057 592 CDD CuRO_1_LCC_plant 40 156 IPR034288 GO:0005507
Cla04g01057 592 SUPERFAMILY Cupredoxins 28 184 IPR008972 -
Cla04g01057 592 ProSitePatterns Multicopper oxidases signature 1. 550 570 IPR033138 -
Cla04g01057 592 PANTHER MULTI-COPPER OXIDASE 15 592 IPR045087 -
Cla04g01057 592 Pfam Multicopper oxidase 44 157 IPR011707 GO:0005507
Cla04g01057 592 CDD CuRO_2_LCC_plant 171 324 IPR034285 -
Cla04g01057 592 SUPERFAMILY Cupredoxins 171 365 IPR008972 -
Cla04g01057 592 Gene3D - 168 368 IPR008972 -
Cla04g01057 592 SUPERFAMILY Cupredoxins 369 592 IPR008972 -
Cla04g01057 592 TIGRFAM laccase: laccase 37 592 IPR017761 GO:0046274|GO:0048046|GO:0052716
Cla04g01057 592 Pfam Multicopper oxidase 172 289 IPR001117 -
Cla04g01057 592 Gene3D - 30 156 IPR008972 -
Cla04g01057 592 Gene3D - 397 592 IPR008972 -
Cla04g01057 592 PANTHER LACCASE-1 15 592 - -
Cla04g01057 592 Pfam Multicopper oxidase 442 574 IPR011706 GO:0005507|GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01057 K05909 E1.10.3.2; laccase [EC:1.10.3.2] - csv:101208781 1078.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01057 Cla-Chr4:25741819 Cla07g00806 Cla-Chr7:22496588 0 dispersed
Cla09g01468 Cla-Chr9:28088623 Cla04g01057 Cla-Chr4:25741819 6.40E-06 dispersed
Cla04g01057 Cla-Chr4:25741819 Cla10g02015 Cla-Chr10:35963403 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g226 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00705 Chy12g01406 Cme12g01841 . . . . . Bpe15g00517 . . . . . . Cma18g00063 . Car18g00055 Cpe09g01121 . . . . . . . . Cla04g01057 Cam04g1099 Cec01g1614 Cco01g1659 Clacu04g1124 Cmu04g1108 Cre01g1408 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000013 13 15 12 14 11 15 17 15 13 14 14 15 22 14 16 19 15 33 6 15 14 14 15 20 18 14 13 15 19 34 484
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla04g01057 Cla_Chr04 FPKM 0.912979 0.524083 1.507834 1.834833 1.776145 2.025238 1.384104 9.125395 10.129358 7.67649