Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01060 ATGGGGATAAAAGACCTCCTCAGATTCATGAAGCCCTACATTGTGCCCATTCACATCAAGAAATACGCGGGCAAACGTGTAAAGTATCGCGTTGATTCTGTTTGGTTGTTTAGTCCACTTGATTCATTGATCTCTGAATCGAACTTTTTCGCAGGTGGGCATCGACGCCTATTCCTGGCTGCACAAGGGAGTATGGAGATTTGCCTTAATTCTGACAGTAATAAGAAATGGCGATATTTAGACTACTGTATGCATAGAATCAATCTCCTTCGTCATTACAAGATAGTCCCAGTTGTTGTTTTTGATGGTGGGAATGTTCCGTGTAAGTCAGTCACTGAGCAAGAGAGGCACAGAAGAAGAGAGGCGAACAGGGAATTAGCAATGGAGAAGTTGAAGGAAGGGAATGTTGGTGCTGCCTCTGAGCTTTTCCAGCTTCTTAGAGAACAAAACATCGAATTTGTGGTAGCCCCTTATGAGGCTGATGCACAGTTAGCATATCTTTCCAGCCTCGGAACACAAAATGGAGGAATTGCAGCTGTGATTACAGAGGATAGTGACTTGATTGCATACGGTTGTAAAGCTACAATCTTTAAGATGGACCGATATGGCAATGGTGAAGAAATGATGCTAGATAAGATTTTTGAATCTGAAGGCTGCACACCTTCCTTCAGAAATTTTGATAAGGAATTGCTCACGGGCATGTGTGTCTTAGCTGGCTGTGATTTTCTTCCTTCTGTTCCTGGAATTGGCATTGCAAAGGCTTATGCCCTGGTCTCCAAGTATCGGAATTTGGAACGTGTTCTTTCTGTTTTGAAGTTTGAGAAAAAGAAGCAAATGCCTGAAGATTACTTCAAACTTTTCAGACAAGCTATGGCAGTCTTTCAGCATGCACAAATATATGATGCCGAAACGAGGAAGCTTAGACACATGAAACCACTTCCCCTAGAGCTTCTGCAGTCCCTAGATGAAGAAATTGATTTTTTGGGACCTTTTTCTTTAACCCATTATGGTGGAAATAGAGATATGCCTCCTTCAATAGCTGTTTCAATAGCCGAAGGAAGGTTAAACCCCATAACTATGGAGGCTTTTAACTATTTCTCAAGCGAAGAATGTCGCCAAGACCTTAAACAAATAAAAAATAACGAAAGACTTCCAAGGACCGAGGCGGTTGAGGTATTTGGGAAGGACAGTTGTTTTATGGTCTTCGTCGGTAAGGACAGAGAAAGACATATCCCGGATAAGAGAATTAAACCCGTCGTAGGTGATAAGAATTCTAAAGAAGAATTGGCACTTGAGAAGCTAATCACACCGTTGAATGTTCAAAGAACAAATGAAGACAAAACCGATCTTGACTACAAATCAATAAAGATTCCTGACAACAATCCATTCAAGAGAAGGAAAGTTGATGAATGGCACTCGGATCTCACGCAGAGTGTTGATGAAGAAGTTTCAGTCATAAGTGAGGATGAATGTGAGGAACTATCGTGTGAGACTCCAGATAAGTTAAAATTAAAATCTTCCAGAAAAAGAAAACTAAACGAAGCTCTCTCTGAACAAATGGATAATGTTACTGAGCTTATATCAGGGATAACCCAAGAAGAGGATTTGGTGCTGTTAGAACAGACACCAGAATCCCAAAAGAGTGTAAGCTCAAAGACAAGCAGTGTCATAGGTAGAAAAAGAGTTGTAGGCAAGGAGAACAAGAGAAAAAGCAACTGTAATAATTCAGAATTTCTGTTGGGGAATTCTTATGTTTTTGCATTAATCCACTTAGAGTGTAATTTTACTGCATGGATTGACCAACATGGAAATCGTTTTAAGTAA 1824 40.35 MGIKDLLRFMKPYIVPIHIKKYAGKRVKYRVDSVWLFSPLDSLISESNFFAGGHRRLFLAAQGSMEICLNSDSNKKWRYLDYCMHRINLLRHYKIVPVVVFDGGNVPCKSVTEQERHRRREANRELAMEKLKEGNVGAASELFQLLREQNIEFVVAPYEADAQLAYLSSLGTQNGGIAAVITEDSDLIAYGCKATIFKMDRYGNGEEMMLDKIFESEGCTPSFRNFDKELLTGMCVLAGCDFLPSVPGIGIAKAYALVSKYRNLERVLSVLKFEKKKQMPEDYFKLFRQAMAVFQHAQIYDAETRKLRHMKPLPLELLQSLDEEIDFLGPFSLTHYGGNRDMPPSIAVSIAEGRLNPITMEAFNYFSSEECRQDLKQIKNNERLPRTEAVEVFGKDSCFMVFVGKDRERHIPDKRIKPVVGDKNSKEELALEKLITPLNVQRTNEDKTDLDYKSIKIPDNNPFKRRKVDEWHSDLTQSVDEEVSVISEDECEELSCETPDKLKLKSSRKRKLNEALSEQMDNVTELISGITQEEDLVLLEQTPESQKSVSSKTSSVIGRKRVVGKENKRKSNCNNSEFLLGNSYVFALIHLECNFTAWIDQHGNRFK 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25769117 25774044 - ClCG04G010770.2 Cla04g01060 271288

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01060 607 CDD PIN_EXO1 1 215 IPR044752 GO:0046872
Cla04g01060 607 ProSitePatterns XPG protein signature 2. 150 164 IPR019974 GO:0016788
Cla04g01060 607 Gene3D - 224 297 - -
Cla04g01060 607 Pfam XPG N-terminal domain 77 121 IPR006085 GO:0004518
Cla04g01060 607 CDD H3TH_FEN1-like 229 301 - -
Cla04g01060 607 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 97 116 IPR006084 -
Cla04g01060 607 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 146 163 IPR006084 -
Cla04g01060 607 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 231 246 IPR006084 -
Cla04g01060 607 PANTHER 5'-3' EXONUCLEASE FAMILY PROTEIN 1 575 - -
Cla04g01060 607 Coils Coil 513 533 - -
Cla04g01060 607 Gene3D - 1 218 - -
Cla04g01060 607 SUPERFAMILY PIN domain-like 2 241 IPR029060 -
Cla04g01060 607 SMART HhH_4 228 261 IPR008918 GO:0003677|GO:0003824
Cla04g01060 607 SMART xpgn3 1 123 IPR006085 GO:0004518
Cla04g01060 607 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 227 367 IPR036279 -
Cla04g01060 607 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 575 IPR006084 -
Cla04g01060 607 Pfam XPG I-region 150 241 IPR006086 GO:0004518
Cla04g01060 607 SMART xpgineu 147 219 IPR006086 GO:0004518
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01060 K10746 EXO1; exonuclease 1 [EC:3.1.-.-] - csv:101208542 813.142
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00678 Cla-Chr3:8204463 Cla04g01060 Cla-Chr4:25769117 7.74E-70 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g234 . . . . . . . . Cmo13g01036 . . . . . . Cpe20g00142 . . . . . . . . . . . . . . . Cone2ag0752 . . . Lsi02g00221 Csa01g00703 Chy12g01409 Cme12g01843 . . . . . Bpe15g00519 . . Sed01g1757 . . Cma13g01000 . Car13g00834 . . . Bhi08g01277 Tan05g2208 Cmetu12g1384 Lac10g0276 . . . Cla04g01060 Cam04g1103 Cec01g1617 Cco01g1663 Clacu04g1127 Cmu04g1111 Cre01g1413 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011036 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla04g01060 Cla_Chr04 FPKM 3.528809 3.798482 2.840857 3.241393 2.666619 1.540876 2.544491 1.873103 2.493803 2.131115