Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01062 ATGGGCCCTGAGCACCTGTGTCGATCTGCAACGGCCATTTTATCGATTGTGGACTTACATGAGATGGGCTTGGAGGTGATCGTCGAAGTTGGCAATTCAGAGGTAGACGATGGAATGGTCTTTGATGGAGATATCGAGGAGGATATTCGTGCATTAGAACTTGATCCACCAGATGTTAATGGGGTTCCTAATCCAGATGCAAAGATGGAGGAAGTTGTGAAATCCGATAATCCGGAAGAAGAGGACCATCCCCAGCAAGCCCAAGCTATCCACGTTCAAGAACAAGTGAAGGAGAACATATCTGCTAAGGAGAAGGAAATTTCTTCAACTGAAAATGAAGATGAAGGGGATGTGGAGTTAGACCGCAAAAGACACTTGAATGTTGTGTTCATTGGTCATGTTGATGCTGGTAAGTCTACAATTGGAGGCCAGATACTTTTCCTTAGCAATCAGGTTGACGAGCGTACAATCCAAAAGTACGAAAAAGAAGCAAAAGACAAAAGCAGAGAAAGCTGGTACATGGCGTATATCATGGACACAAATGAAGAGGAGAGAGTTAAGGGGAAAACTGTTGAAGTGGGAAGAGCGCATTTTGAAACTGAGACCACAAGGTTTACAATTTTGGATGCTCCGGGTCACAAAAGTTATGTCCCGAATATGATCAGTGGGGCATCCCAAGCTGATATAGGGGTTCTGGTAATTTCTGCTAGGAAAGGAGAATTTGAAACTGGATATGAGAGAGGTGGACAGACTCGTGAGCATGTTTTGCTGGCAAAGACTTTGGGTGTTGCTAAGCTTCTTGTTGTGGTGAATAAGATGGATGATCACACAGTACAATGGTCAAAAGAAAGGTATGATGAGATAGAGTCTAAGATGGCACCCTTCTTGAAGTCATCTGGTTACAATGTAAAGAAAGATGTCCAATTTTTACCTATATCTGGTCTTCATGGTGTTAATATGAAAACAAGAGTGGATAAGAAAGTATGTCCGTGGTGGAATGGTCCGTGCTTCTTTGAAATCCTTGATACAATTGAAGGTCCACCAAGAAATCCAAAAGATCCATTTAGGATGCCTATCATCGACAAGTTCAAGGACATGGGAACAACTGTTATGGGTAAAGTCGAATCTGGCACTGTGCGTGAGGGTGATTCCTTATTGGTTATGCCAAACAAGATACAAGTGAAAGTTACAGCTGTGATGTGTGATGAAAGTAAAGTCAAGAGTGCAGGACCTGGGGAGAATCTTCGTGTTAGAGTAGCTGGAATTGAAGAAGAAGATATAGCGTCTGGGTTTGTACTATCAAGCATTGCAAAACCAATACCTTGTGTTTCTGAGTTTGTTGCACAGTTGCAGATTCTTGAGCTGCTGGATAATGCAATATTTACAGCTGGATATAAGGCGGTACTTCACATTCATGCTGTTGTTGAAGAATGTGAAATCATAGAGCTGCTACAGCAGATCGATCCAAAGACTAGAAAACCTATGAAAAAGAAAGTTCTCTTTGTGAAGAATGGTGCAGTTATTTTGTGCCGCGTCCAGGTCAATAACTTGATCTGCATTGAGAAGTTTTCTGATGTTCCTCAGCTCGGAAGATTTACACTTCGTACTGAAGGGAAGACAGTTGCCGTAGGAAAAGTCACTGATATTCCAGCTGCAAGCAATTAA 1665 42.16 MGPEHLCRSATAILSIVDLHEMGLEVIVEVGNSEVDDGMVFDGDIEEDIRALELDPPDVNGVPNPDAKMEEVVKSDNPEEEDHPQQAQAIHVQEQVKENISAKEKEISSTENEDEGDVELDRKRHLNVVFIGHVDAGKSTIGGQILFLSNQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVLLAKTLGVAKLLVVVNKMDDHTVQWSKERYDEIESKMAPFLKSSGYNVKKDVQFLPISGLHGVNMKTRVDKKVCPWWNGPCFFEILDTIEGPPRNPKDPFRMPIIDKFKDMGTTVMGKVESGTVREGDSLLVMPNKIQVKVTAVMCDESKVKSAGPGENLRVRVAGIEEEDIASGFVLSSIAKPIPCVSEFVAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIIELLQQIDPKTRKPMKKKVLFVKNGAVILCRVQVNNLICIEKFSDVPQLGRFTLRTEGKTVAVGKVTDIPAASN 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25795571 25808564 + ClCG04G010790.2 Cla04g01062 271290

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01062 554 Coils Coil 93 113 - -
Cla04g01062 554 Pfam Elongation factor Tu C-terminal domain 442 549 IPR004160 -
Cla04g01062 554 CDD EF1_alpha 127 348 - -
Cla04g01062 554 Gene3D - 77 346 IPR027417 -
Cla04g01062 554 Gene3D Translation factors 352 436 - -
Cla04g01062 554 Coils Coil 150 170 - -
Cla04g01062 554 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 179 194 IPR031157 -
Cla04g01062 554 PRINTS GTP-binding elongation factor signature 266 275 IPR000795 GO:0003924|GO:0005525
Cla04g01062 554 PRINTS GTP-binding elongation factor signature 222 233 IPR000795 GO:0003924|GO:0005525
Cla04g01062 554 PRINTS GTP-binding elongation factor signature 127 140 IPR000795 GO:0003924|GO:0005525
Cla04g01062 554 PRINTS GTP-binding elongation factor signature 206 216 IPR000795 GO:0003924|GO:0005525
Cla04g01062 554 Pfam Elongation factor Tu GTP binding domain 123 329 IPR000795 GO:0003924|GO:0005525
Cla04g01062 554 CDD eRF3_II 354 435 - -
Cla04g01062 554 SUPERFAMILY Translation proteins 347 439 IPR009000 -
Cla04g01062 554 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 118 358 IPR027417 -
Cla04g01062 554 Gene3D Translation factors 442 550 - -
Cla04g01062 554 CDD eRF3_C_III 441 549 - -
Cla04g01062 554 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 123 352 IPR000795 GO:0003924|GO:0005525
Cla04g01062 554 PANTHER TRANSLATION FACTOR 95 545 - -
Cla04g01062 554 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 444 549 IPR009001 -
Cla04g01062 554 MobiDBLite consensus disorder prediction 98 119 - -
Cla04g01062 554 Pfam Elongation factor Tu domain 2 367 433 IPR004161 GO:0005525
Cla04g01062 554 PANTHER BNAA06G12300D PROTEIN 95 545 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01062 K03267 ERF3, GSPT; peptide chain release factor subunit 3 - csv:101217809 907.131
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01062 Cla-Chr4:25795571 Cla09g01994 Cla-Chr9:37509304 6.56E-80 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g246 Blo04g00839 Blo16g00126 . . . Bpe13g00367 Bma06g00055 . Cmo13g01039 Cmo18g00045 . . . . . Cpe20g00140 . . . . . . . . . . . . . . . . . . . Lsi02g00219 Csa01g00700 Chy12g01412 Cme12g01846 . . Bda11g01780 . . Bpe15g00536 Bma03g00904 . Sed08g2749 . . Cma13g01003 Cma18g00058 Car13g00838 Car18g00051 Cpe09g01124 Cpe18g00872 Bhi08g01272 Tan05g2214 Cmetu12g0241 Lac10g0273 . . . Cla04g01062 Cam04g1105 Cec01g1619 Cco01g1666 Clacu04g1130 Cmu04g1114 Cre01g1415 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004032 3 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla04g01062 Cla_Chr04 FPKM 0.289855 0.0 0.0 0.0 6.198118 4.016187 4.627086 0.0 0.0 0.0