Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01075 ATGAAACAATCTGTCACTGAGTTTTTAGGGTTCCTGAACATGCCATCTGATGTGGAAATTTTGGGATCGGAATCGGCCACGCAGCGTATTTCCAGAAGTACATCTAGATCTTTAATCAATTCCCTACCATTTCAGTTTGTTGCTTCGAAAACAGAGAGGACACCAGCATCAACACCCGGAGGACCTCGATCTAAGGAAGAGAAGATCGTTGTTACTGTGCGGTTAAGGCCTCTGAGTAAAAAGGAGCAGCAAGCGAAAGATCAAATGGCATGGGAGTGCATTGATGATCATACCATTGTATACAAACCTCAGCCTCAGGAACGTCAAACTCAACCAGCCTCGTTTACATTTGATAAAGTTTTCAGTCCCACTTCTTTGACTGAGGCAGTATATGAGGAAGGAGTAAAGAATGTTGCCTTATCTGCCCTAATGGGCATCAATGCCACCATATTCGCCTATGGGCAAACTAGTAGTGGAAAGACATTTACAATGAGGGGGATAACTGAGAAAGCTGTTAATGATATCTACAAACATATTAGTAATACACCCGAGAGAGATTTTACAATAAGAATTTCTGGACTGGAAATATACAATGAGAATGTTAGGGATCTACTGAATACAAAATCAGGTCGGAATCTAAAGCTTCATGATGACCCAGAGGTAGTACTCATAATAACATTTGTAAGGGTTAAAGGAAATATGCGACTGAATAAATTCTGTTTAAAAACTGAAATTGTGATTCTTTTTGTGCAGAAAGGTACAATGGTTGAGAAATTAGTAGAGGAAACGGCAAATAATGATCAACATTTGAGGCATTTGATTAGCATCTGTGAGGCTCAAAGACAAGTTGGTGAAACTGCCTTGAATGACTATAGCTCTCGGTCACACCAGATCATAAGGCTGACAATTCAAAGTACCCTACGAGAAAATTCAGATTGCGTTAGATCTTTTGTGGCAAGCTTGAATTTTGTTGATCTAGCTGGAAGTGAGAGAGCTTCACAGACACATGCTGATGGTGCTAGGCTAAGAGAAGGCTGTCATATTAACCTTAGTTTGATGACGCTCACAACTGTGATCAGAAAGCTAAGTCTTGGAAAGAGAAGTGGTCATATACCTTATAGAGACTCAAAGCTCACCCGCATATTGCAGCACTCCCTTGGTGGAAATGCACGAACCGCCATTATTTGCACTTTGAGTCCAGCACTGACTCATGTTGAACAATCGCGGAACACTTTGTACTTTGCCACCCGGGCAAAGGAAGTGACTAATAACGCCCAAGTCAATATGGTTGTATCGGACAAACAATTGGTCAAACATTTACAAAAGGAAGTTGCCAGGCTAGAAGCAGAACTGCGCACTCCTGATCCAAAAAGGGAGAAAGATTTAAAAATCCAGCAGATGGAAATGGAGATTGAAGAATTAAAACGACAAAGAGACCTTGCTCAATCCCAGGTTGATGAGCTCCGCAGAAAACTTGAGGAAGACCAGCAGGGTTCCAACCCAATTGAATCTGCCCGTCCTCCAGTGAAGAAGTGTTTGTCCTTTACTGGTACATTGCCTCAGAAACTCGACAGCAAGGACCTTGGCCGTGGTATGATATTAAGGCAGTCTATGATGAGACAATCATCGACTGCTCCCTTCACACTTATGCATGAAATTCGCAAGCTGGAACATCTCCAGGAGCAGCTTGGGGAGGAAGCTAATAGAGCCCTCGAAGTATTGCAAAAGGAGGTGGCTTGTCACAGACTGGGGAACCAAGATGCAGCAGAAACAATTGCCAAACTACAAGCTGAAATAAGAGAAATGAGATCAGTCCGCTCAGAACCAAAAGAGGTTGAGGTTGGGAACACTATTGCTACTAACCAGAGTGTAGGTGCTAATCTTAAGGAAGAGATAACACGGCTTCATTCTCAAGGTAGCACCATTGCCAATTTAGAGGAGCAGCTTGAAAATGTTCAGAAGTCTATTGACAAGTTGGTAATGTCTCTACCAAGCAATTATCAGCAGTTCATGAGCAGTGAATCAACCCCCAAACAAAAAAGTTATACTAAAAAGAAGAAATTGCTTCCTTTGGCCTCAAGTAATGTTACCAACCGGCAAAACTTTTTAAGATCGCCATGCTCCCCTTCAACAACTCCCCAGCAAGTACTGGAGTCCGATACTGAAAATAGAGCTCCTGAGAATGATGATGACTTCTCATCTGAGATTCTGCTCGAGTCTGAGAAAGAGACTCCAACAAAGAGTGAAGAAGGTGGAGATGTCTCATCAAAGGAGAACACTCCTTGTTATAGAAGATCAAGTTCTGTGAACATGAAGAAGATGCAAAAGATGTTCCAAAATGCAGCAGAAGAAAACGTAAGAAGCATAAGAGCATATGTGACAGAATTGAAAGAACGTGTGGCTAAACTGCAGTACCAAAAACAGCTACTTGTTTGTCAGGTCCTTGAGCTGGAAGCAAATGAAGCAGCTGGCAACAAATTAGATTGTGATGAAAACACATTTGAGCAAGATGACGACCAAGTTCCGTGGCATGTAACTTTCAGGGAGCAAAGGCAGCAGATTATTGAGTTATGGGATGCTTGCTATGTCTCCATTATTCACAGATCTCAGTTCTACTTGTTATTCAAGGGCGACGAGGCTGATCAGATTTACCTGGAAGTAGAGATGAGGCGCTTAACATGGCTGCAGGATCACCTAGCGGAATTTGGCAATGCTAGTCCAGCTCACTTTGGGGACGAGCCAACAATCTCTCGCTCGTCAAGCATGAGGGCATTGAGACGTGAAAGAGAGTTTCTTGCAAAGAGATTAACTTCACGATTGTCAGCAGAAGAAAGAGATGCCTTGTACATTAAATGGGAAGTACCACTTGAAGGGAAACAGAGGAAAATCCAATTTGTAAACAAGCTCTGGACAAATCCTCACGACCCCAAGCATATTCAGGACAGTGCAGAGATAGTGGCAAAGCTTGTTGGGTTCTGTGAAGGAGGCAACATGTCCAGGGAGATGTTTGAACTCAATTTTGTTGTTCCTTCCGACAAAAGACCATGGATCATGGGATGGAACCCAATTTCAAACCTTCTTAATTTGTGA 3090 42.52 MKQSVTEFLGFLNMPSDVEILGSESATQRISRSTSRSLINSLPFQFVASKTERTPASTPGGPRSKEEKIVVTVRLRPLSKKEQQAKDQMAWECIDDHTIVYKPQPQERQTQPASFTFDKVFSPTSLTEAVYEEGVKNVALSALMGINATIFAYGQTSSGKTFTMRGITEKAVNDIYKHISNTPERDFTIRISGLEIYNENVRDLLNTKSGRNLKLHDDPEVVLIITFVRVKGNMRLNKFCLKTEIVILFVQKGTMVEKLVEETANNDQHLRHLISICEAQRQVGETALNDYSSRSHQIIRLTIQSTLRENSDCVRSFVASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSLGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALTHVEQSRNTLYFATRAKEVTNNAQVNMVVSDKQLVKHLQKEVARLEAELRTPDPKREKDLKIQQMEMEIEELKRQRDLAQSQVDELRRKLEEDQQGSNPIESARPPVKKCLSFTGTLPQKLDSKDLGRGMILRQSMMRQSSTAPFTLMHEIRKLEHLQEQLGEEANRALEVLQKEVACHRLGNQDAAETIAKLQAEIREMRSVRSEPKEVEVGNTIATNQSVGANLKEEITRLHSQGSTIANLEEQLENVQKSIDKLVMSLPSNYQQFMSSESTPKQKSYTKKKKLLPLASSNVTNRQNFLRSPCSPSTTPQQVLESDTENRAPENDDDFSSEILLESEKETPTKSEEGGDVSSKENTPCYRRSSSVNMKKMQKMFQNAAEENVRSIRAYVTELKERVAKLQYQKQLLVCQVLELEANEAAGNKLDCDENTFEQDDDQVPWHVTFREQRQQIIELWDACYVSIIHRSQFYLLFKGDEADQIYLEVEMRRLTWLQDHLAEFGNASPAHFGDEPTISRSSSMRALRREREFLAKRLTSRLSAEERDALYIKWEVPLEGKQRKIQFVNKLWTNPHDPKHIQDSAEIVAKLVGFCEGGNMSREMFELNFVVPSDKRPWIMGWNPISNLLNL 1029
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25897161 25901705 - ClCG04G010950.2 Cla04g01075 271303

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01075 1029 CDD KISc_CENP_E 68 421 - -
Cla04g01075 1029 SMART kinesin_4 66 429 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla04g01075 1029 Coils Coil 556 576 - -
Cla04g01075 1029 Coils Coil 457 498 - -
Cla04g01075 1029 Coils Coil 635 662 - -
Cla04g01075 1029 MobiDBLite consensus disorder prediction 485 508 - -
Cla04g01075 1029 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 68 455 IPR027417 -
Cla04g01075 1029 Coils Coil 430 450 - -
Cla04g01075 1029 MobiDBLite consensus disorder prediction 688 721 - -
Cla04g01075 1029 PANTHER CENTROMERE PROTEIN E 251 1028 - -
Cla04g01075 1029 PANTHER CENTROMERE PROTEIN E 55 222 - -
Cla04g01075 1029 Coils Coil 585 605 - -
Cla04g01075 1029 MobiDBLite consensus disorder prediction 722 754 - -
Cla04g01075 1029 MobiDBLite consensus disorder prediction 670 766 - -
Cla04g01075 1029 PRINTS Kinesin heavy chain signature 286 303 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla04g01075 1029 PRINTS Kinesin heavy chain signature 145 166 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla04g01075 1029 PRINTS Kinesin heavy chain signature 320 338 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla04g01075 1029 PRINTS Kinesin heavy chain signature 371 392 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla04g01075 1029 Pfam Kinesin motor domain 74 421 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla04g01075 1029 PANTHER KINESIN-LIKE PROTEIN KIN-7A 251 1028 - -
Cla04g01075 1029 PANTHER KINESIN-LIKE PROTEIN KIN-7A 55 222 - -
Cla04g01075 1029 ProSitePatterns Kinesin motor domain signature. 319 330 IPR019821 GO:0003777|GO:0005524|GO:0007018
Cla04g01075 1029 Pfam Domain of unknown function (DUF3490) 847 1009 IPR021881 -
Cla04g01075 1029 Gene3D Kinesin motor domain 61 452 IPR036961 -
Cla04g01075 1029 ProSiteProfiles Kinesin motor domain profile. 68 421 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01075 K11498 CENPE; centromeric protein E - csv:101215425 1783.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01075 Cla-Chr4:25897161 Cla11g00015 Cla-Chr11:191930 0 dispersed
Cla04g01075 Cla-Chr4:25897161 Cla02g00484 Cla-Chr2:4739362 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g285 Blo04g00833 Blo16g00131 . . . Bpe13g00360 Bma06g00050 . Cmo13g01049 Cmo18g00040 . . . . . Cpe20g00132 . . . . . . . . . . . . . . . . . . . Lsi02g00207 Csa01g00689 Chy12g01421 Cme12g01857 . . Bda11g01773 . . Bpe15g00531 Bma03g00900 . . . . Cma13g01010 Cma18g00049 Car13g00845 Car18g00043 Cpe09g01132 . Bhi08g01257 . . . . . . Cla04g01075 Cam04g1119 Cec01g1632 Cco01g1678 Clacu04g1145 Cmu04g1126 Cre01g1427 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001397 1 1 3 3 2 2 3 2 2 1 2 2 3 2 2 3 2 2 3 2 2 2 2 3 4 2 1 10 2 2 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla04g01075 Cla_Chr04 FPKM 1.327394 0.0 2.508241 1.68656 5.140418 3.748532 5.572532 3.309292 2.246996 3.304027