Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01080 ATGGCTGCCAAGAGGTCTTTATCCGAAACAGAGTCTTGTTCAGATCAGAGGCTAGAGGAGAAGCGCCCACGACATACGTTTTCATCGATCATTGGGGACGTTGTAATGGTAAATTCCATAAGGCATCTTTCAAAAGCATTGGAACCGTTGCTTAGACAAGTGGTAACAGAGGAAGTCGACAGATGTTTATTACGATATTCAAGATCATTAGCCAGAGCATCTTCGTCAAGAATACAAGCCCCAGAACCATCTAGTTTTCAATTGTATTTTGAAAATAATCATCCCTCTACTATTTTTAGTGGAAGTAAAAAATTACCGATGTGGAAGGCGTTGCGACTCGCCGTCGGGGTCGGTGGAGAAGATCCGTCGTTGTTGCCGATTTCGTCGTCGTTGAAAATTGAAATGGTGGTGTTGGACGGCGAATTTGCAGCCGAAGATCGAGAGGATTGGACAGCTGAGGAATTTAATGCCAGCATTGTGAAAGAAAGATCTGGAAAGAGGCCGTTGCTTCACGGTGAAATGAATGCAACTTTCCGCCACTGCGCTGCCACGATTGGGGATCTTGAATTTACCGATAACTCGAGCTGGATTCGGAGCAGGAAATTTCGGCTTGGGGCCCGAGTTGTGTCCGGTTCAGACCAAGATAACGTACCCCGGATTCGGGAAGCCATTACCGAACCGTTTGTAGTCAAAGATCACCGCGGCGAATTGTACAAAAAGCATTATCCTCCAAGGTTGAGTGATGAAGTTTGGAGATTGGAAAAGATTGGAAAAGAAGGAGTCTTCCACAAGAAGTTACGCAGTGACAATATCAACACAGTTCAAGATTTCTTAAAGCTCTATAACATTGATCCAGAAAAGCTAAGAACGATTTTAGGGTGTGGAATGTCAGACAAGATGTGGGACGCAATAGTAAAACATGCAAAAACTTGTGAATTGGGAAACAAGCTCTACATGTTTCGTGGACCCAATTTCTTACTAATTTTGAACCCAATTTGTGAAGTTGTTAGAGCCACGATTGGGAACCAAATATATTCATCTCGAGACTACTCCAATATACCGAAGGAATACTTGGAGAATTTGAGGAGACAAGCATTTGATAATTGGTCTTCGTTACAAGACTTTGAAGGAAATTTAGGAGAATCATCAGCCCAAGGAAATGAAGGAAGTAATGTTATATCGGAGAATCTGTTGCTTCAAAGTGGCTACGAGATCCTAAGCGGTCAACTTGAATACCCAGATTGGGGTTTCAATCCAGAGTAA 1263 42.91 MAAKRSLSETESCSDQRLEEKRPRHTFSSIIGDVVMVNSIRHLSKALEPLLRQVVTEEVDRCLLRYSRSLARASSSRIQAPEPSSFQLYFENNHPSTIFSGSKKLPMWKALRLAVGVGGEDPSLLPISSSLKIEMVVLDGEFAAEDREDWTAEEFNASIVKERSGKRPLLHGEMNATFRHCAATIGDLEFTDNSSWIRSRKFRLGARVVSGSDQDNVPRIREAITEPFVVKDHRGELYKKHYPPRLSDEVWRLEKIGKEGVFHKKLRSDNINTVQDFLKLYNIDPEKLRTILGCGMSDKMWDAIVKHAKTCELGNKLYMFRGPNFLLILNPICEVVRATIGNQIYSSRDYSNIPKEYLENLRRQAFDNWSSLQDFEGNLGESSAQGNEGSNVISENLLLQSGYEILSGQLEYPDWGFNPE 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25964672 25966836 - ClCG04G010970.1 Cla04g01080 271308

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01080 420 Pfam Calmodulin binding protein central domain 246 311 IPR046830 -
Cla04g01080 420 Pfam Calmodulin binding protein C-terminal domain 316 374 IPR046829 -
Cla04g01080 420 MobiDBLite consensus disorder prediction 1 20 - -
Cla04g01080 420 Pfam Calmodulin binding protein-like N-terminal domain 86 233 IPR046831 -
Cla04g01080 420 PANTHER OS02G0177800 PROTEIN 1 385 IPR012416 GO:0005516
Cla04g01080 420 PANTHER PROTEIN SAR DEFICIENT 1 1 385 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01080 - - - bhj:120084202 633.254
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01080 Cla-Chr4:25964672 Cla06g01310 Cla-Chr6:26500235 2.45E-92 dispersed
Cla04g01168 Cla-Chr4:26898830 Cla04g01080 Cla-Chr4:25964672 1.11E-12 dispersed
Cla04g01080 Cla-Chr4:25964672 Cla02g01494 Cla-Chr2:29458562 5.56E-56 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g293 Blo04g00832 . . . . . . . Cmo13g01056 Cmo18g00039 . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00676 . . . . . . . . . . Sed08g2191 . . . Cma18g00048 . Car18g00042 . . Bhi08g01244 Tan05g2251 Cmetu12g0949 Lac10g0248 Hepe07g2379 . . Cla04g01080 Cam04g1127 Cec01g1640 Cco01g1686 Clacu04g1157 Cmu04g1138 Cre01g1436 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002933 1 1 1 1 1 2 2 2 2 1 1 2 2 1 1 2 2 2 1 2 1 1 1 1 1 1 1 3 6 3 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla04g01080 Cla_Chr04 FPKM 9.101252 7.291754 8.989945 7.706833 12.703301 12.757711 11.432142 9.82854 9.323959 8.6073