Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01081 ATGGCTAATGATCAGCTAAAGCATTCTCCATCTCAGTTTTCCCAAATCTTCCATTTTCTCTTCTTACTTATTGGCTTCTCCTTTGGAATGGCTATCAGTTTGAACCTTAAGAGCTTCTCATCCTTTAACATCCACCTCCCTAACTTTTCCTTTCCATCTTCACCATCAACAACACTAGTGTTTATCAGACAACAGCAGCAACAAACTCCAGCCTCATCGTCACCCCCACCACTTCAACCGCCGTCGTCGTCACCGGCGTCTCCTTCTTTGGTTGACTTTGACAATCAGTTACTCGAGGCGAACGTAGAGCCGCCTCTGATGCATAAAATGAGTGATGATGAGGTGTTTTGGAGAGCATCCATGGTTCCAATGATAAAAAAGTTTCCATATGAACGTGTGCCAAAAATTGCTTTCATGTTTTTGATAAAAGGGGCATTGCCTTTAGCTCCTTTGTGGGAAATGTTCTTCAAAGGACATCAACATTTGTTTTCAATTTATGTGCATACTCATCCATTGTATAATGTTTCTTCTTCTCTGCCTCCAAACTCTGTCTTCTATGGAAGAAGAATCCCAAGCCAGGCAGTGCAATGGGGAAGACCCTCCATGATCGACGCCGAGCGCCGTCTTCTAGCAAACGCCCTTCTTGACTTCTCTAACGAAAGATTCGTCCTCCTCTCCGAAACTTGTATTCCTCTCTACAACTTCACAACTGTCTACAATTACCTCATTAATTCTCAACACACCTTCGTTTCTTCCTACGACGATCCTCGAAAGATCGGCCGTGGTCGTTACAACCCCAAGATGTTTCCCATCGTGTCGATCGCTGACTGGCGAAAAGGATCGCAGTGGTTTGAAGTTGATCGAACGGTAGCCGTCGAGATAATCTCCGACAAAACATATTACCCTATCTTCAGAGACCATTGCGGGCCACCGTGTTACATGGACGAGCATTACATTCCTACGTTGGTTAACATTGTTTTGCCGGACCGGAATTCCAACAGAACCGTTACATGGGTTGATTGGTCCAAAAACGGTCCGCATCCCGGCAGATTTGGGAGGCGGGAGATCTCGGTCGAGTTTTTGAACCGGGTTCGGTTTGGTTTCAATTGTACTTATAATAATGGAAACGGCACCGTTTCTCCATGCTTTCTGTTTGCTCGGAAATTCATGCCGGATTCTTTACAACCTCTGCTGAAGATTTGGCCATCTCTGTTGGAAGGTTTGCGACGGCAGCCGCACATGGCGGAGCCGACGGCGAAGGTCCTTCAGGGCGTTCAGTTTCATCAACTTAGTATCCTAATATCTCACTTTCTTGTGTTTGGGTTAGGATTGGTTATTGGGATTAGTTTTAATTTCTCGGTTAGTGGTTTATCTTCGACTTTTCAGCTTAGCCAGTGGCCGGTTACTCCGCCGACGCTACCGGCGGGGGTGGTGGGGTTGAGGGAATTTAGGAGCTCAAAAAGTGTGGGCCAGGAGATGAGAAAGTTGCCGGGGAAGGTGGCGTTCATGTTCTTAACGAGAGGGGATTTGCCGTTGAGGGCACTTTGGGAAAGATTTTTCAATGGAAATGAAGGATTATACTCAATTTATGTGCATTCTCATCCTTCTTTCAACGGAACTTACCCAAAAAATTCCGTCTTCTATGGCTGTAGTATCCCTAGTAAGGAAGTTGAATGGGGTCAGCCGAGCATGATTCAGGCAGAGCGACGTCTCTTAGCCAACGCTCTTCTCAACTTCTCTAACGAACGATTTGTCCTCCTTTCCGAGTCTTGCATTCCCGTCTTCAATTTCACCACCGTCTACAATTATCTTATGGGCTCGGCCCATGTCTTCGTCGAGTCCTACGACTTACCGGGCCGTTTGGGCCGCAACCGGTACAGGCCCAAAATGAAGCCCACAATCACCAAGGCCCAATGGCGGAAAGGCTCTCAGTGGTTCGAAATGGACCGACGGACGGCAACGGAGGTGGTGGCGGACCAGAAGTACTTCCCACTCTTCGAAAAGCACTGCCGCCCGGGTTGCATTTCGGATGAGCACTACTTGCCGACGATGGTGGGTATACGGTTCGGGGAGAGGAATTCGAACCGGACTCTGACTTGGACTGACTGGTCGAAGCAGGGGCCTCACCCGACCGGGTTCGGGAGCGGCAATGTCACGGTTGGGCTTCTGGAAAGTATAAGGAACGGCAGCACTTGCGAGTATAATGGACAAAGCACTAGAATTTGCCATTTGTTTGCGAGAAAATTTATGGCAAGTGGTTTGGATCGGCTGCTGGAAATTGCTTCACAAGTCATGTTCATCCCTTGA 2307 47.85 MANDQLKHSPSQFSQIFHFLFLLIGFSFGMAISLNLKSFSSFNIHLPNFSFPSSPSTTLVFIRQQQQQTPASSSPPPLQPPSSSPASPSLVDFDNQLLEANVEPPLMHKMSDDEVFWRASMVPMIKKFPYERVPKIAFMFLIKGALPLAPLWEMFFKGHQHLFSIYVHTHPLYNVSSSLPPNSVFYGRRIPSQAVQWGRPSMIDAERRLLANALLDFSNERFVLLSETCIPLYNFTTVYNYLINSQHTFVSSYDDPRKIGRGRYNPKMFPIVSIADWRKGSQWFEVDRTVAVEIISDKTYYPIFRDHCGPPCYMDEHYIPTLVNIVLPDRNSNRTVTWVDWSKNGPHPGRFGRREISVEFLNRVRFGFNCTYNNGNGTVSPCFLFARKFMPDSLQPLLKIWPSLLEGLRRQPHMAEPTAKVLQGVQFHQLSILISHFLVFGLGLVIGISFNFSVSGLSSTFQLSQWPVTPPTLPAGVVGLREFRSSKSVGQEMRKLPGKVAFMFLTRGDLPLRALWERFFNGNEGLYSIYVHSHPSFNGTYPKNSVFYGCSIPSKEVEWGQPSMIQAERRLLANALLNFSNERFVLLSESCIPVFNFTTVYNYLMGSAHVFVESYDLPGRLGRNRYRPKMKPTITKAQWRKGSQWFEMDRRTATEVVADQKYFPLFEKHCRPGCISDEHYLPTMVGIRFGERNSNRTLTWTDWSKQGPHPTGFGSGNVTVGLLESIRNGSTCEYNGQSTRICHLFARKFMASGLDRLLEIASQVMFIP 768
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26008303 26017080 - ClCG04G010980.1 Cla04g01081 271309

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01081 768 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 495 764 IPR044174 GO:0016757
Cla04g01081 768 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 8 406 IPR044174 GO:0016757
Cla04g01081 768 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN 8 406 - -
Cla04g01081 768 MobiDBLite consensus disorder prediction 63 88 - -
Cla04g01081 768 Pfam Core-2/I-Branching enzyme 500 726 IPR003406 GO:0016020|GO:0016757
Cla04g01081 768 Pfam Core-2/I-Branching enzyme 136 364 IPR003406 GO:0016020|GO:0016757
Cla04g01081 768 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN 495 764 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01081 - - - csv:101207079 711.835
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla04g01081 Cla06g01454 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01081 Cla-Chr4:26008303 Cla05g01814 Cla-Chr5:30104550 7.90E-97 dispersed
Cla01g00570 Cla-Chr1:6424633 Cla04g01081 Cla-Chr4:26008303 2.19E-110 transposed
Cla02g00989 Cla-Chr2:17072958 Cla04g01081 Cla-Chr4:26008303 6.03E-54 transposed
Cla03g01151 Cla-Chr3:23951269 Cla04g01081 Cla-Chr4:26008303 2.44E-37 transposed
Cla05g01293 Cla-Chr5:15566869 Cla04g01081 Cla-Chr4:26008303 2.75E-95 transposed
Cla08g00850 Cla-Chr8:20914076 Cla04g01081 Cla-Chr4:26008303 2.39E-34 transposed
Cla04g01081 Cla-Chr4:26008303 Cla06g01454 Cla-Chr6:28096199 2.26E-119 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g295 . . . . . . . . Cmo13g01057 . . . . . . . . . . . . . . . Cla06g01454 Cam06g1608 Cec06g1669 Cco06g1664 Clacu06g1573 Cmu06g1525 Cre06g2336 . . . . . Csa01g00673 . . . . . . . . . . Sed12g2090 . . Cma13g01017 . . . . . Bhi08g01243 Tan05g2257 Cmetu02g1431 Lac10g0247 Hepe07g2380 . . Cla04g01081 Cam04g1133 Cec01g1643 Cco01g1692 Clacu04g1161 Cmu04g1142 Cre01g1438 Lsi06g01318 . Chy02g02352 Cme02g01728
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002679 1 2 1 1 1 2 2 2 2 2 1 2 0 2 2 2 2 6 2 2 2 3 2 2 2 1 2 2 2 3 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla04g01081 Cla_Chr04 FPKM 150.113312 157.08844 210.691025 207.355621 113.026527 101.75367 114.791588 563.031372 592.843628 558.676086