Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01086 ATGAGATCTTCTTCGGAGAGAATCAACATCGCCGCCAGTACCCGGCGGGTCGTTGTTGACAATCGATTTCCTCTCCGTTATTATTATCGAGTCGCCGATAATGTTTTGAAACAGGCTGACATCTTTCGAGCAGAGAAGAACATAATTGATCTTTATGTCATGTTAATGAGATTTTCAAGTTTGGTCACTGAGACAATACCTCGTCATTTGGAGTATGGGACAACTCTGAAATCCCAAAAAAATTATTTTAGAAAGAAGCTATTAAATGCTTTGAGCGAGCTTGAAGAATTGAAGCCAGCAGTTCAAAGAAAGGTGGATGAAATAAATGGGAAACAAAAATATCAAGTCAATGGGTGGGGTAATCAGCATCAAAATGGTTCATTGGAATGGCATTCTGGTGGAAAGCAGTATCTTACTGATAATGGCATGGCTAAGGCTAGTAAATCAGCTTCTAGAGAAATTGCTCGTCAAGACTCAGGGACTCATCAATTTTCATATTCCAGATCTATTCGTATTCCACTCCCAAAGGAGGAAACGTTATCCCGTCATTCTATTTTGGGTCCCAATGGGCTTCATGGCCAGTGGCAACCACCTATCGTTGATAAAGGGGTTCAATATCCACGTATTTTGGATCTGTCTCCCATTGACATTCCAAGAAAGGAGTTTAACTCTATTGTTTTGTATGTAACATCTTTCTCCTCCATGTTCCATATAAACAGCTTACAACAATCAATAGAAACCAAACTTACAATAGAAAAAGATGTTGGAAACTTGGAAAAAGAAAGATCTGATATAGACTCAATCTGCATCCAGAATAACGGTCGCGAGATAAATAATGCCATGGGAACAGATTCCTTGATCTCGTTTGAACAAGTTGAAATGCCTGCCCCTATTGAAATTGTGCGACAGCCTTCTCCTCCACCTGTACTTGCTGAAGTACAGGATTTGATACCTGCAATGTCACCTCAAGTTCCCGAGGTAGAATGTGCACAAGACACTTCGTCGTCGGATGGTTTTGTTCACCCAGAAGCTTCTATGCAATTGCACATTTCGACCACGATGATGGAGAGCTTCATGAGGCTAGCCAAGTCAAATACTTCCAAGAATTTAGAAACCTGCGGTGTTCTTGCCGGTTTACTTAAAAACAGAAAATTTTATGTCACTGCACTCATTGTGCCAAAGCAAGAATCAACACCAAATACTGCGACAAATGAAGAAGAGATATTTGACGTGCAGGATAAGCGTTCTCTATTTCCACTTGGGTGGATTCATACACATCCTTCACAGTCATGCTTCATGTCTTCGGTTGATGTTCACACACATTACTCATATCAGATGATGGATATTACCAATTGCAATTTTTTGGAACTTCTACCGGCAAAAGAAAGCATTTATATCTTCTATCTCCAGGTAATGTTGCCTGAAGCTGTTGCAATTGTGATGGCTCCCAAGGACAGTGCAAGAACCCATGGCATTTTCCGGTTGACAACCCCGGGTGGCATGTCAATAATTCGGCAATGCCAACAACGTGGCTTTCACTCGCATGGTCAGCCTCCTGATGGTGGACCCATTTACAAAACCTGTACAGATGTATACATGGACCCCAATTTGAAATTTGATGTCATTGATCTTCGATGA 1638 41.15 MRSSSERINIAASTRRVVVDNRFPLRYYYRVADNVLKQADIFRAEKNIIDLYVMLMRFSSLVTETIPRHLEYGTTLKSQKNYFRKKLLNALSELEELKPAVQRKVDEINGKQKYQVNGWGNQHQNGSLEWHSGGKQYLTDNGMAKASKSASREIARQDSGTHQFSYSRSIRIPLPKEETLSRHSILGPNGLHGQWQPPIVDKGVQYPRILDLSPIDIPRKEFNSIVLYVTSFSSMFHINSLQQSIETKLTIEKDVGNLEKERSDIDSICIQNNGREINNAMGTDSLISFEQVEMPAPIEIVRQPSPPPVLAEVQDLIPAMSPQVPEVECAQDTSSSDGFVHPEASMQLHISTTMMESFMRLAKSNTSKNLETCGVLAGLLKNRKFYVTALIVPKQESTPNTATNEEEIFDVQDKRSLFPLGWIHTHPSQSCFMSSVDVHTHYSYQMMDITNCNFLELLPAKESIYIFYLQVMLPEAVAIVMAPKDSARTHGIFRLTTPGGMSIIRQCQQRGFHSHGQPPDGGPIYKTCTDVYMDPNLKFDVIDLR 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26039448 26047756 - ClCG04G011040.2 Cla04g01086 271314

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01086 545 ProSiteProfiles MPN domain profile. 348 473 IPR037518 -
Cla04g01086 545 Coils Coil 84 111 - -
Cla04g01086 545 Pfam USP8 dimerisation domain 11 100 IPR015063 -
Cla04g01086 545 SUPERFAMILY JAB1/MPN domain 346 447 - -
Cla04g01086 545 PANTHER AMSH-LIKE PROTEASE 469 545 - -
Cla04g01086 545 Gene3D Cytidine Deaminase, domain 2 465 545 - -
Cla04g01086 545 PANTHER AMSH-LIKE UBIQUITIN THIOESTERASE 1 1 447 - -
Cla04g01086 545 PANTHER AMSH-LIKE UBIQUITIN THIOESTERASE 1 469 545 - -
Cla04g01086 545 Gene3D Cytidine Deaminase, domain 2 331 451 - -
Cla04g01086 545 SMART pad1_6 347 470 IPR000555 GO:0005515|GO:0008233|GO:0008237
Cla04g01086 545 CDD MPN_AMSH_like 347 545 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Cla04g01086 545 Gene3D - 2 125 - -
Cla04g01086 545 PANTHER AMSH-LIKE PROTEASE 1 447 - -
Cla04g01086 545 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 345 448 IPR000555 GO:0005515|GO:0008233|GO:0008237
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01086 K11866 STAMBP, AMSH; STAM-binding protein [EC:3.4.19.12] - csv:101214704 873.618
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01086 Cla-Chr4:26039448 Cla06g00441 Cla-Chr6:5372511 1.73E-148 dispersed
Cla04g01086 Cla-Chr4:26039448 Cla04g01087 Cla-Chr4:26048382 1.54E-53 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g306 Blo04g00830 . . . . Bpe13g00355 Bma06g00047 . Cmo13g01061 Cmo18g00038 . . . . . Cpe20g00126 . . . . . . . . . . . . . . . . . Cone13ag0305 . Lsi02g00186 Csa01g00669 Chy12g01434 Cme12g01872 . . Bda11g01770 . . . Bma03g00896 . Sed08g2186 . . Cma13g01020 Cma18g00045 Car13g00854 Car18g00039 Cpe09g01135 . Bhi08g01239 Tan05g2262 Cmetu12g0605 Lac10g0242 Hepe07g2388 . . Cla04g01086 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005782 2 1 1 3 1 1 2 1 1 1 2 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla04g01086 Cla_Chr04 FPKM 18.488144 20.218822 17.784056 17.713678 22.117554 20.404058 19.523697 26.264904 25.649857 27.857666