Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01089 ATGAAGGTCTTTGGCTTGCTTAGTGCTACCCCTCTTAAAGTAGCCGAAGTACTCCACCCGAAGCCTTTTACTGTTGGAAAAATAATTAAGCTACAAGCACCTGCATTTTGCCCTCTGGCTTTGTTTCTTTTCGATTTCCAAGGATTGATGCCAAATGGCCAACAAGTTGCAGTCAAGAAGCTCTCGTTAGATTCAAGACAAGGAGTGAGGCAATTTAGTAATGAAGTGAAACTTCTACTGAGAATTCAGCACCGAAATTTGGTCATTTTATTGGGCTGTTGTGTAGAAGGACCTGAAAAGATGCTTGTGTATGAGTACTTACCAAACAGAAGTCTTGATTACTTTATTTTCGGTAAGAACCTCATTCGAAGGGGACTTCATGAATTTTTCTATTTCCTATGTGGAAATTTATATGCATCTTATTGCAGTTGGTTGAGGTTAATGGAACTTATTCTTGCAAATGCTCCTTCAAGAATTATACATAGAGATGTCAAAGCTAGTAACATATTATTAGATGAGCAATTGAATCCGAAAATCTCAGATTTTGGATTAGCTCGACTTTTTCCTGGGGATGACACACATTTGAATACATTTAAGATTGCCGGCACTCATGGCTATATGGCTCCTGAATATGCAATTCATGGATATTTGTCTGTGAAGAGTGACGTTTTCAGTTTTGGGATCCTGGTATTAGAGATTGTTAGTGGAAGAAAAAATTATGACGACCGACTTGGTGCACAACAAGTGGACCTCTTGGGATATGTAAGTTACTGGCGACGATTGTTAAAACTTCAATTACTGAAATGTGTTGAGAATCAAAAAAAAATAGGCGATGTTGAAGTTCCTAAACAAATATCTCTTCAACAGGCATGGTTGCTTTACCAAGAAGGAAGGATTTTAGAATTAGCTGATAAAAGCTTAACAAAATGCAATGTAGATGAGGCAGCTATGTGCATTCAGTTGGGTTTGTTATGTTGTCAAGCAAGTGTCACAGATAGGCCTGACATGAATACCATTCATCTCATGCTTTCTAGTGATTCGTTCACGTTGCCGCGACCTGGAAGACCTGGAATTCATGGTCGAGCAGCACGTCGAACAACTACCTCTACTTCGAATTTCACCAAGACAAATACTAGTACACAAACTGGCGTTACTAGAGCTTCAACTAGTAGTAGTTTGGTAGAGGATTATTCAAGAAATTCCATTTCTGTTTCTTCTATTGATGAAGGCAGGTGA 1236 38.75 MKVFGLLSATPLKVAEVLHPKPFTVGKIIKLQAPAFCPLALFLFDFQGLMPNGQQVAVKKLSLDSRQGVRQFSNEVKLLLRIQHRNLVILLGCCVEGPEKMLVYEYLPNRSLDYFIFGKNLIRRGLHEFFYFLCGNLYASYCSWLRLMELILANAPSRIIHRDVKASNILLDEQLNPKISDFGLARLFPGDDTHLNTFKIAGTHGYMAPEYAIHGYLSVKSDVFSFGILVLEIVSGRKNYDDRLGAQQVDLLGYVSYWRRLLKLQLLKCVENQKKIGDVEVPKQISLQQAWLLYQEGRILELADKSLTKCNVDEAAMCIQLGLLCCQASVTDRPDMNTIHLMLSSDSFTLPRPGRPGIHGRAARRTTTSTSNFTKTNTSTQTGVTRASTSSSLVEDYSRNSISVSSIDEGR 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26060328 26062143 + ClCG04G011070.1 Cla04g01089 271317

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01089 411 Gene3D Phosphorylase Kinase; domain 1 41 106 - -
Cla04g01089 411 MobiDBLite consensus disorder prediction 363 391 - -
Cla04g01089 411 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Cla04g01089 411 ProSiteProfiles Protein kinase domain profile. 1 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g01089 411 SMART serkin_6 23 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g01089 411 Gene3D Transferase(Phosphotransferase) domain 1 142 350 - -
Cla04g01089 411 MobiDBLite consensus disorder prediction 353 391 - -
Cla04g01089 411 Pfam Protein tyrosine and serine/threonine kinase 53 243 IPR001245 GO:0004672|GO:0006468
Cla04g01089 411 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 267 409 - -
Cla04g01089 411 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 46 256 - -
Cla04g01089 411 SUPERFAMILY Protein kinase-like (PK-like) 50 359 IPR011009 -
Cla04g01089 411 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 267 409 - -
Cla04g01089 411 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 46 256 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01089 - - - csv:101214463 487.648
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla04g01089 Cla06g01460 CCT
Cla04g01089 Cla06g01460 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01089 Cla-Chr4:26060328 Cla07g00571 Cla-Chr7:9749949 4.12E-82 dispersed
Cla04g01089 Cla-Chr4:26060328 Cla05g01568 Cla-Chr5:26537136 1.26E-77 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g308 Blo04g00828 . . . . . . . Cmo13g01062 . Cma10g00303 . Car10g00288 . . . . . . . . . . . Cla06g01460 Cam06g1612 Cec06g1674 Cco06g1668 Clacu06g1576 Cmu06g1528 Cre06g2339 . Cone16ag0570 . . . . Chy12g01435 Cme12g01873 . . . . . . . . . Cmo10g00324 . Cma13g01021 . . . . . Bhi08g01237 . . . . . . Cla04g01089 . . . . . . Lsi06g01323 Csa01g00394 Chy02g02355 Cme02g01732
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012066 0 3 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 0 1 1 27
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80515 PF07714 PK_Tyr_Ser-Thr 8.20E-32 CL0016 Cla PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla04g01089 Cla_Chr04 FPKM 51.564465 52.523396 62.351471 66.139954 82.885651 74.967018 83.499229 55.370872 63.283615 64.178612