Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01092 ATGGCTGAGTTCACTCCAAACTTTCAAAGCTTAAAGCCATCATCTTTTCCTCTAATGGATGTGAATCCCAACCAAAATCCAACTCTACTTCATAACCCAAATCTTAATTTTCTTCATAACAACATTCCTGTTTTGTTCAATGACAGTTTCTTAGCCAATCAAACTCCTCCTCCTCCTAGATTCCTGGAAAATTGGGGAGAAAATTTCTCTCAAGCCAATCAAATCACTCCTATTTCACATGTTTTTGAGCCTACAAATCCATTTGGAAATGACGTCCATGGAAGCAACAAAAGAAAGCTTGAAAATGATGCTTATGAAAGCAGCTCTGCCAACTCAACCCCTCAAATTTCTGAAAATGGGATCAAGACAAAAAATAACACTGGAAAAGGAAAGCGGTCGAAAAAAAGCGACGAAAACGACGGTGAGAAACCGAGGGAAGTGGTTCATGTTAGAGCTAGAAGAGGTCAAGCAACAGACAGTCACAGTGTAGCAGAAAGGATAAGAAGAGGGAAAATCAATGAAAGATTGAGATGTTTGCAAGACATTGTCCCTGGATGTTACAAGACAATGGGAATGGCAGTGATGTTGGATGAGATAATCAATTATGTGCAGTCTTTACAAAATCAAGTTGAGTTTCTGTCCATGAAACTCACAGCTGCAAGCTCCTTTCACGACTTCAACTCAGACTCAGTTGCTGATGACAAATTGAAGGCAAAGGAAATAAAAGAAGGAAATGGAGGATTATTGGTTGCATCAACTCAACTTGGTCCTTTTGACTTGAGCTTTGGTTCTTATTCAACATTGCCATTCAACACCATATGA 822 39.17 MAEFTPNFQSLKPSSFPLMDVNPNQNPTLLHNPNLNFLHNNIPVLFNDSFLANQTPPPPRFLENWGENFSQANQITPISHVFEPTNPFGNDVHGSNKRKLENDAYESSSANSTPQISENGIKTKNNTGKGKRSKKSDENDGEKPREVVHVRARRGQATDSHSVAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSFHDFNSDSVADDKLKAKEIKEGNGGLLVASTQLGPFDLSFGSYSTLPFNTI 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26099025 26100644 + ClCG04G011110.1 Cla04g01092 271320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01092 273 Gene3D - 153 224 IPR036638 GO:0046983
Cla04g01092 273 MobiDBLite consensus disorder prediction 101 163 - -
Cla04g01092 273 Pfam Helix-loop-helix DNA-binding domain 160 207 IPR011598 GO:0046983
Cla04g01092 273 MobiDBLite consensus disorder prediction 130 163 - -
Cla04g01092 273 CDD bHLH_AtBPE_like 146 231 - -
Cla04g01092 273 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 241 IPR024097 GO:0006355
Cla04g01092 273 SMART finulus 162 212 IPR011598 GO:0046983
Cla04g01092 273 PANTHER TRANSCRIPTION FACTOR BEE 1 2 241 - -
Cla04g01092 273 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 154 223 IPR036638 GO:0046983
Cla04g01092 273 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 156 206 IPR011598 GO:0046983
Cla04g01092 273 MobiDBLite consensus disorder prediction 105 126 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla04g01092 Cla06g01463 CCT
Cla04g01092 Cla06g01463 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01092 Cla-Chr4:26099025 Cla06g01463 Cla-Chr6:28183341 1.52E-72 dispersed
Cla04g01091 Cla-Chr4:26084619 Cla04g01092 Cla-Chr4:26099025 1.27E-121 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60936 PF00010 HLH 5.30E-05 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01092 - - csv:101213736 418.698