Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla04g01092 | ATGGCTGAGTTCACTCCAAACTTTCAAAGCTTAAAGCCATCATCTTTTCCTCTAATGGATGTGAATCCCAACCAAAATCCAACTCTACTTCATAACCCAAATCTTAATTTTCTTCATAACAACATTCCTGTTTTGTTCAATGACAGTTTCTTAGCCAATCAAACTCCTCCTCCTCCTAGATTCCTGGAAAATTGGGGAGAAAATTTCTCTCAAGCCAATCAAATCACTCCTATTTCACATGTTTTTGAGCCTACAAATCCATTTGGAAATGACGTCCATGGAAGCAACAAAAGAAAGCTTGAAAATGATGCTTATGAAAGCAGCTCTGCCAACTCAACCCCTCAAATTTCTGAAAATGGGATCAAGACAAAAAATAACACTGGAAAAGGAAAGCGGTCGAAAAAAAGCGACGAAAACGACGGTGAGAAACCGAGGGAAGTGGTTCATGTTAGAGCTAGAAGAGGTCAAGCAACAGACAGTCACAGTGTAGCAGAAAGGATAAGAAGAGGGAAAATCAATGAAAGATTGAGATGTTTGCAAGACATTGTCCCTGGATGTTACAAGACAATGGGAATGGCAGTGATGTTGGATGAGATAATCAATTATGTGCAGTCTTTACAAAATCAAGTTGAGTTTCTGTCCATGAAACTCACAGCTGCAAGCTCCTTTCACGACTTCAACTCAGACTCAGTTGCTGATGACAAATTGAAGGCAAAGGAAATAAAAGAAGGAAATGGAGGATTATTGGTTGCATCAACTCAACTTGGTCCTTTTGACTTGAGCTTTGGTTCTTATTCAACATTGCCATTCAACACCATATGA | 822 | 39.17 | MAEFTPNFQSLKPSSFPLMDVNPNQNPTLLHNPNLNFLHNNIPVLFNDSFLANQTPPPPRFLENWGENFSQANQITPISHVFEPTNPFGNDVHGSNKRKLENDAYESSSANSTPQISENGIKTKNNTGKGKRSKKSDENDGEKPREVVHVRARRGQATDSHSVAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSFHDFNSDSVADDKLKAKEIKEGNGGLLVASTQLGPFDLSFGSYSTLPFNTI | 273 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 26099025 | 26100644 | + | ClCG04G011110.1 | Cla04g01092 | 271320 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla04g01092 | 273 | Gene3D | - | 153 | 224 | IPR036638 | GO:0046983 | |
Cla04g01092 | 273 | MobiDBLite | consensus disorder prediction | 101 | 163 | - | - | |
Cla04g01092 | 273 | Pfam | Helix-loop-helix DNA-binding domain | 160 | 207 | IPR011598 | GO:0046983 | |
Cla04g01092 | 273 | MobiDBLite | consensus disorder prediction | 130 | 163 | - | - | |
Cla04g01092 | 273 | CDD | bHLH_AtBPE_like | 146 | 231 | - | - | |
Cla04g01092 | 273 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 2 | 241 | IPR024097 | GO:0006355 | |
Cla04g01092 | 273 | SMART | finulus | 162 | 212 | IPR011598 | GO:0046983 | |
Cla04g01092 | 273 | PANTHER | TRANSCRIPTION FACTOR BEE 1 | 2 | 241 | - | - | |
Cla04g01092 | 273 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 154 | 223 | IPR036638 | GO:0046983 | |
Cla04g01092 | 273 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 156 | 206 | IPR011598 | GO:0046983 | |
Cla04g01092 | 273 | MobiDBLite | consensus disorder prediction | 105 | 126 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cla04g01092 | Cla06g01463 | CCT | |
Cla04g01092 | Cla06g01463 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla04g01092 | Cla-Chr4:26099025 | Cla06g01463 | Cla-Chr6:28183341 | 1.52E-72 | dispersed | |
Cla04g01091 | Cla-Chr4:26084619 | Cla04g01092 | Cla-Chr4:26099025 | 1.27E-121 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60936 | PF00010 | HLH | 5.30E-05 | No_clan | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla04g01092 | - | - | csv:101213736 | 418.698 |