Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01103 ATGGCTCGGATCTTTGAGTATTTCGTGGTTTGTGGGATCGGGCCGGAGATTCGGACTCTAGATGGGAACAAGGGGTTTCATGGATTCAGTTACTTGTATCTACCCTCTCTTCTCGATCAGTATCCTCCTTCCAACAATTCTCGTTGTCCTCCTCCACCACCTCAGCTCCCAACGTGTGTTCTACCAGCTGGGGTCGAGTTTTTTTCATCGGGATTTGATTCCAGTGACCCCTGCACTTTTCCGCGGAGTTATCCGATTGTTTTGACGGAGGGCGATGGGTCAAAAATTTATGTCAGTTGCATTGCTTTTAGAGACCCTGTTTGTGAGGACATTGCCGAAGCTTACCGCATTCCACCAAATTCTTATGCTGATAAATGTATCTGTGTTGTTTCGCGTTCGCCCAGCTTCCGTGTCCTTAAAGATGCATTGGAGGAATTGTTTGCTTTGTGCTTCTCCAGCACTGGAAGTAGCAAGCCTCTGTGGGATATCATAGCACACATGGTCTCCAATGTACCACTGTCTACTCCTGGGAAGGATCGGATTTTGTTTAGTATTGAGAATTGCCTTCTTTCCGTTCAGGCTCCATCCAAGGATGGGCTTCCCTATGCTGATATTTCGTTTCAGCCGCTTATGCAGTGCTTGGATTTGGAAAATGTGATCAAACTTTTCACTGCTGTCTTGCTGGAGAGGAGGATTCTTCTTCGATCAAACAATCCCTGTCCTTTAATGCCATTCTCTCCTAGTACTAGTCAGTTTCTTGTTCAACAATTTGGTTTAATTGGTCATTTTGACTGGATTGCTTGCTCTTTATCATACGTACTCCTGTACGATCTGTATTCACTTTTAACTCTTGTATCAGAAGCCATTTGTCATTTAATATATCCATTTAGATGGCAGCATGTCTACATTCCGTTACTCTTTTTCAGTGGAGTAGACTATATTGATGCTCCCACACCATATATGATGGGTCTTCATTCTGGCGTTGATACATCTTATCTGGCAATGGATGGTGTTGTTGTAGTGGACCTTGAGTATAATTGTATCACAACTACTGAGGAAATACCACCTATTCCAGAACCAGAACTTGGATCTTTGCGTTGCGAGCTGATGAAGTTGATATATCCCAATGTTGTTAGCATAGATCAAATGAGGTCTGATTTGCGTAGCTCATCTGATCAGTACCCTAGAGTTAGCAGCAAGCCTTGGGGAGAAGACCATGATCTTCAGCTTAGGTTGATATTTTTAAAATTCTTTGCATCACTCTTAAGTGGCTATCGCAATTTTATAGAAAACAATGTGACTGATGTCTTCAATACACAAGCATTCTTGAAGAAGCGTTCGCGATCAACTAATCAACCAGAAGATCCCATGATAACTCAGTTCCTGGAGTCCCAAGGGTTTTTAGACTATCTAGAGAGATGCATAGGTTCTGATGAAAGTAATAATAATATTCTTGACAAGTTACAAGATGCAATTGGGAGGGGTCAAAATCCTCTTTCAATTCTCCCATCATTGTTTGAACCTGAGATCATAACAATCTCTGACCCTGATTTGGGAACATCAGGTTCTGGTGCCAAGTACACTTATGATAGATTTCCTTCAAACATCAGAACTGAGGAGCAGGAAGAAAAGAGAAAACAAATTCTAGCAGCAGCAAGTGGAGCTTTTGAATACTCTGGAAAACATAATCCTAATTCACCTTCTATGCTGATCGGCAAGGATCTGAAAGCAGAAAGCCTCAGTCCAATGGAGAGACAGGCCGAAAGGGATCGCATGGTTTTGGACATAAAAGTCAAGCTACAGGGTCTCTGGCTGCGTCTTCTGAAACTGGGTGCAACTGATGATCCTCTTTCTTCCTTTGAATATGGCACTATTCTTGCTTTGATTGAGTCTGATGCAGAGGGAATTGGTGGTAGTGGTTTTGTTGAGTGTATTAGAGAGCACATAAATACAGGATGGCTTTGTCAGTTAACCGATGAACAATTTATTGCTGTGAAAGAATTGCTAAAAACAGCAATCAGTCGTGCAACTTCACGAAATGATATATTGACAATTAGGGATGCCCTTGAAGTGTCTGGTGAAATGTACAAGAAAGACCCTAATAATGTTCCTGATTACATCCAACGCCATCTTATTTCTCTATCTATATGGGAGGAGTTAAGATCCGCAAATTATGCATCTCTGGTTTCTGCGCAGCTAATTGTTATGGCATCGCACATGGCTGGGCTTGGGCTTCCTGATACTGATGCTTGGTACATGATTGAGACAATTGCGGAGAAGAACAGCATTGGATACAAGCAACTCTCTGCAGTTGGATTAGGTTTAGCAGTTACAGTGCCATACATATTCTCTCATTTACAATCCTACTTAAATGATTTTCAGATAAAGCTCCGAGGTTTCTTATCCCATATCCAGCAGCTGCGCATTAGTTATTGGGGACTCTCTTCTGTTAAGTTGCAATCCATATCTGCCCATGCATTGCCATCTCCGCGTCCCAAAGATGGATCTGATCAGAATCAGCAACCTGCTGAGGCTTCTGTTGTTGGAAGAAGCTGGGTTCAGAGCATGTTCAGCAGGGATACATCTGCAAGGATGTTGGGTCGTAGCGGCCGTTGGTCTTCTGATGCCACGAGTGAGAGTGGTACTCCTCAAAGACAGGATTTATCCTCAGCTGGGCAGAAAAAAGTTCAAAGCAATATTCGTGTTCTTAGGGGTCACAGTGGAGCTGTGACAGCACTTCATTGTGTTACAAAAAGGGAGGTGTGGGACTTGCTGGGAGACCGTGAGGATGCAGGCTTTTTCATTAGTGGAAGCACGGACTGCTCGGTCAAGATATGGGATCCAAGTCTTCGTGGTTCTGAATTGCGAGCAACTTTAAAGGGTCATACAGGACCTGTTCGTGCAATTAATTCTGATCGAGGAAAAGTAGTTTCTGGGTCTGATGATCAGTCAGTTATTGTATGGGATAAGCAAACAACCCAGCTTCTAGAAGAGCTGAAAGGCCACGATGCTCAGGTCAGTTGTGTGCGTATGCTGTCAGGCGAACGTGTCCTTACTGCTGCGCATGATGGAACCGTGAAGATGTGGGATGTCAGAACTGATACTTGTGTGGCAACTGTTGGTCGTTGCTCTAGTGCAGTTCTATGCATGGAATATGATGACTCTACAGGAATATTGGCTGCTGGTGGTAGAGATACAGTAGCAAATATCTGGGACATCCGTGCTGGCCGGCAAATGCACAAGCTTTTAGGTCATACGAAATGGATACGCTCAATAAGAATGGTAGGAGACACCATAGTCACCGGTAGTGATGATTGGACCGCTAGATTGTGGTCTGTTTCTCGAGGAACATGTGATGCTGTTCTAGCATGCCATGCTGGCCCAATATTGGCCGTTGAGTATTCTACACTGGACAAAGGAATAATAACTGGTTCAACTGATGGACTTCTCCGTTTTTGGGAAAACGAGGATGGGGGTATTAGATGTGTGAAGAATGTCACCATTCATAGTGCTGCCATACTGTCCATCAGTGCTGGGGAACATTGGTTAGGAATTGGAGCGGCAGATAACTCTATGTCTCTCTTTCATCGGCCGCAAGAGAGACTCGGTGGCTTCTCTAACACGGGTGCAAAAATGGCTGGATGGCAACTGTACAGAACCCCGCAAAAGACTGCAGCCATGGTACGATGTGCGGCTTCAGATCTTGAAAGGAAACGAATATGCACCGGCGGCCGTAATGGCCTTCTGAGGCTCTGGGAAGCAACCATCAACATCTGA 3777 44.19 MARIFEYFVVCGIGPEIRTLDGNKGFHGFSYLYLPSLLDQYPPSNNSRCPPPPPQLPTCVLPAGVEFFSSGFDSSDPCTFPRSYPIVLTEGDGSKIYVSCIAFRDPVCEDIAEAYRIPPNSYADKCICVVSRSPSFRVLKDALEELFALCFSSTGSSKPLWDIIAHMVSNVPLSTPGKDRILFSIENCLLSVQAPSKDGLPYADISFQPLMQCLDLENVIKLFTAVLLERRILLRSNNPCPLMPFSPSTSQFLVQQFGLIGHFDWIACSLSYVLLYDLYSLLTLVSEAICHLIYPFRWQHVYIPLLFFSGVDYIDAPTPYMMGLHSGVDTSYLAMDGVVVVDLEYNCITTTEEIPPIPEPELGSLRCELMKLIYPNVVSIDQMRSDLRSSSDQYPRVSSKPWGEDHDLQLRLIFLKFFASLLSGYRNFIENNVTDVFNTQAFLKKRSRSTNQPEDPMITQFLESQGFLDYLERCIGSDESNNNILDKLQDAIGRGQNPLSILPSLFEPEIITISDPDLGTSGSGAKYTYDRFPSNIRTEEQEEKRKQILAAASGAFEYSGKHNPNSPSMLIGKDLKAESLSPMERQAERDRMVLDIKVKLQGLWLRLLKLGATDDPLSSFEYGTILALIESDAEGIGGSGFVECIREHINTGWLCQLTDEQFIAVKELLKTAISRATSRNDILTIRDALEVSGEMYKKDPNNVPDYIQRHLISLSIWEELRSANYASLVSAQLIVMASHMAGLGLPDTDAWYMIETIAEKNSIGYKQLSAVGLGLAVTVPYIFSHLQSYLNDFQIKLRGFLSHIQQLRISYWGLSSVKLQSISAHALPSPRPKDGSDQNQQPAEASVVGRSWVQSMFSRDTSARMLGRSGRWSSDATSESGTPQRQDLSSAGQKKVQSNIRVLRGHSGAVTALHCVTKREVWDLLGDREDAGFFISGSTDCSVKIWDPSLRGSELRATLKGHTGPVRAINSDRGKVVSGSDDQSVIVWDKQTTQLLEELKGHDAQVSCVRMLSGERVLTAAHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDTVANIWDIRAGRQMHKLLGHTKWIRSIRMVGDTIVTGSDDWTARLWSVSRGTCDAVLACHAGPILAVEYSTLDKGIITGSTDGLLRFWENEDGGIRCVKNVTIHSAAILSISAGEHWLGIGAADNSMSLFHRPQERLGGFSNTGAKMAGWQLYRTPQKTAAMVRCAASDLERKRICTGGRNGLLRLWEATINI 1258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26218568 26232487 + ClCG04G011210.2 Cla04g01103 271331

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01103 1258 MobiDBLite consensus disorder prediction 826 848 - -
Cla04g01103 1258 PANTHER DENN DOMAIN-CONTAINING PROTEIN 3 3 240 - -
Cla04g01103 1258 ProSitePatterns Trp-Asp (WD) repeats signature. 1017 1031 IPR019775 -
Cla04g01103 1258 SMART DENN_cls 122 346 IPR001194 -
Cla04g01103 1258 MobiDBLite consensus disorder prediction 864 895 - -
Cla04g01103 1258 Gene3D - 886 1094 IPR015943 GO:0005515
Cla04g01103 1258 PANTHER C-MYC PROMOTER BINDING PROTEIN 3 240 - -
Cla04g01103 1258 SMART WD40_4 1033 1072 IPR001680 GO:0005515
Cla04g01103 1258 SMART WD40_4 952 989 IPR001680 GO:0005515
Cla04g01103 1258 SMART WD40_4 1214 1253 IPR001680 GO:0005515
Cla04g01103 1258 SMART WD40_4 896 947 IPR001680 GO:0005515
Cla04g01103 1258 SMART WD40_4 1159 1196 IPR001680 GO:0005515
Cla04g01103 1258 SMART WD40_4 1115 1154 IPR001680 GO:0005515
Cla04g01103 1258 SMART WD40_4 1075 1112 IPR001680 GO:0005515
Cla04g01103 1258 SMART WD40_4 992 1030 IPR001680 GO:0005515
Cla04g01103 1258 MobiDBLite consensus disorder prediction 833 848 - -
Cla04g01103 1258 Pfam uDENN domain 35 103 IPR005113 -
Cla04g01103 1258 SUPERFAMILY WD40 repeat-like 900 1253 IPR036322 GO:0005515
Cla04g01103 1258 Gene3D - 1095 1257 IPR015943 GO:0005515
Cla04g01103 1258 Gene3D - 1 172 - -
Cla04g01103 1258 ProSiteProfiles Trp-Asp (WD) repeats profile. 1044 1081 IPR001680 GO:0005515
Cla04g01103 1258 ProSiteProfiles Trp-Asp (WD) repeats profile. 929 947 IPR001680 GO:0005515
Cla04g01103 1258 ProSiteProfiles Trp-Asp (WD) repeats profile. 1122 1154 IPR001680 GO:0005515
Cla04g01103 1258 SMART uDENN_cls 1 104 IPR005113 -
Cla04g01103 1258 Pfam dDENN domain 437 487 IPR005112 -
Cla04g01103 1258 Gene3D - 202 427 IPR043153 -
Cla04g01103 1258 SMART dDENN_cls 406 474 IPR005112 -
Cla04g01103 1258 PANTHER DENN DOMAIN-CONTAINING PROTEIN 3 278 1258 - -
Cla04g01103 1258 Pfam WD domain, G-beta repeat 898 947 IPR001680 GO:0005515
Cla04g01103 1258 Pfam WD domain, G-beta repeat 1077 1112 IPR001680 GO:0005515
Cla04g01103 1258 Pfam WD domain, G-beta repeat 994 1030 IPR001680 GO:0005515
Cla04g01103 1258 Pfam WD domain, G-beta repeat 957 989 IPR001680 GO:0005515
Cla04g01103 1258 PRINTS G protein beta WD-40 repeat signature 1017 1031 IPR020472 -
Cla04g01103 1258 PRINTS G protein beta WD-40 repeat signature 1099 1113 IPR020472 -
Cla04g01103 1258 PRINTS G protein beta WD-40 repeat signature 976 990 IPR020472 -
Cla04g01103 1258 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 959 989 - -
Cla04g01103 1258 ProSiteProfiles Tripartite DENN domain profile. 19 482 IPR037516 -
Cla04g01103 1258 ProSitePatterns Trp-Asp (WD) repeats signature. 1059 1073 IPR019775 -
Cla04g01103 1258 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 999 1033 - -
Cla04g01103 1258 PANTHER C-MYC PROMOTER BINDING PROTEIN 278 1258 - -
Cla04g01103 1258 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1122 1154 - -
Cla04g01103 1258 CDD WD40 899 1195 - -
Cla04g01103 1258 ProSiteProfiles Trp-Asp (WD) repeats profile. 1082 1121 IPR001680 GO:0005515
Cla04g01103 1258 ProSiteProfiles Trp-Asp (WD) repeats profile. 999 1039 IPR001680 GO:0005515
Cla04g01103 1258 Pfam DENN (AEX-3) domain 123 252 IPR001194 -
Cla04g01103 1258 Pfam DENN (AEX-3) domain 278 344 IPR001194 -
Cla04g01103 1258 ProSiteProfiles Trp-Asp (WD) repeats profile. 959 998 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01103 - - - csv:101212131 2219.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01103 Cla-Chr4:26218568 Cla03g00529 Cla-Chr3:5840037 7.26E-10 dispersed
Cla04g01103 Cla-Chr4:26218568 Cla06g01715 Cla-Chr6:30699833 4.31E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g344 . . . . . Bpe13g00342 Bma06g00001 . Cmo13g01072 . . . . . . Cpe20g00113 . . . . . . . . . . . . . . . Cone2ag0645 . . . Lsi02g00171 Csa01g00654 Chy12g01446 Cme12g01886 . . . . . . . . Sed08g2171 . . Cma13g01032 . Car13g00866 . . . Bhi08g01221 Tan05g2280 Cmetu12g2040 Lac10g0223 Hepe07g2408 . . Cla04g01103 Cam04g1156 Cec01g1666 Cco01g1712 Clacu04g1183 Cmu04g1163 Cre01g1461 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012064 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla04g01103 Cla_Chr04 FPKM 57.450665 57.012356 399.170197 383.54541 176.613159 203.556107 190.427841 250.096512 269.041016 248.044083