Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01116 ATGTCTTCTCTCCCATTTGCTTTCTTCTTCCTCCTCCTCTCCTTCCATTTCTTCTCGGCAATTAGCATCGATTTCCTCGTCGGCGATGAGGATGGCTGGGCAGTCCCTAAACCAAAAGAAGCTGACAAATACAACAAATGGGCTTCCCACAACAGATTCAATATCGATGACACTGTCCATTTCAAGTACGAGAAAGATTCGGTGATGATGGTGACAGAGGAAGAGTACAAACAGTGTTTTTCTTCAAAGCCTCTGTTTTATGAGAACAATGGTGATAGTGTTGTGAAACTTGATAGAGCCGGTTTGTTCTATTTCATTAGTGGAGTTTCAGGGCATTGTCAGAAAGGCCAAAGAATGATAATCAAAGTGTTGGAACCTATAAATCCTCCTCACCCACCAACTGCTCCACCAAATAACAAGAATGCTGCAGCAGCCTCTTCTAATTTGCTCTCTGTTTCATCTTCAATCTTGGGAGTGTTCTTGATGTTGTTCTTTGCTCTGTTTCTGTCCATTTGA 516 42.25 MSSLPFAFFFLLLSFHFFSAISIDFLVGDEDGWAVPKPKEADKYNKWASHNRFNIDDTVHFKYEKDSVMMVTEEEYKQCFSSKPLFYENNGDSVVKLDRAGLFYFISGVSGHCQKGQRMIIKVLEPINPPHPPTAPPNNKNAAAASSNLLSVSSSILGVFLMLFFALFLSI 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26369594 26370232 + ClCG04G011350.1 Cla04g01116 271344

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01116 171 PANTHER EARLY NODULIN-LIKE PROTEIN 6 9 160 - -
Cla04g01116 171 CDD OsENODL1_like 24 124 IPR041846 -
Cla04g01116 171 Gene3D - 22 126 IPR008972 -
Cla04g01116 171 ProSiteProfiles Phytocyanin domain profile. 23 125 IPR003245 GO:0009055
Cla04g01116 171 SUPERFAMILY Cupredoxins 23 124 IPR008972 -
Cla04g01116 171 PANTHER BLUE COPPER PROTEIN 9 160 IPR039391 GO:0009055
Cla04g01116 171 Pfam Plastocyanin-like domain 40 117 IPR003245 GO:0009055
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01116 - - - csv:101205884 245.358
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01116 Cla-Chr4:26369594 Cla09g01907 Cla-Chr9:36736478 5.87E-45 dispersed
Cla04g01116 Cla-Chr4:26369594 Cla10g00524 Cla-Chr10:6934499 1.77E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g376 . . . . . . . . Cmo13g01087 . . . . . . Cpe20g00102 . . . . . . . . . . . . . . . . . . . Lsi02g00157 Csa01g00642 Chy12g01460 Cme12g01900 . . . Bda14g00907 . Bpe15g00551 Bma03g00881 . Sed08g2159 . . Cma13g01046 Cma18g00027 Car13g00879 . . . Bhi08g01036 Tan05g2299 Cmetu12g1793 Lac10g0209 Hepe07g2420 . . Cla04g01116 Cam04g1169 Cec01g1680 Cco01g1728 Clacu04g1197 Cmu04g1176 Cre01g1475 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla10g01478 . 14 127 Phytocyanin Superfamily AT3G01070 64.3 2.4e-38 155.6
Cla08g01369 . 7 169 Phytocyanin Superfamily AT2G25060 53.0 1.6e-43 172.9
Cla10g01478 . 12 178 Phytocyanin Superfamily AT5G15350 52.7 2.2e-47 185.7
Cla08g01369 . 16 171 Phytocyanin Superfamily AT4G31840 54.5 8.2e-45 177.2
Cla04g01116 . 12 125 Phytocyanin Superfamily AT3G18590 61.2 6.7e-37 151.0
Cla04g01116 . 12 125 Phytocyanin Superfamily AT3G18590 61.2 6.7e-37 151.0
Cla08g01369 . 7 169 Phytocyanin Superfamily AT2G25060 53.0 1.6e-43 172.9
Cla08g01369 . 16 171 Phytocyanin Superfamily AT4G31840 54.5 8.2e-45 177.2
Cla10g01478 . 14 127 Phytocyanin Superfamily AT3G01070 64.3 2.4e-38 155.6
Cla10g01478 . 12 178 Phytocyanin Superfamily AT5G15350 52.7 2.2e-47 185.7
Cla02g02197 . 11 229 Phytocyanin Superfamily AT1G08500 55.9 8.6e-63 237.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000973 5 4 1 1 2 2 4 2 2 3 3 2 3 3 3 3 2 2 5 3 2 4 3 3 2 3 2 3 2 3 82
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla04g01116 Cla_Chr04 FPKM 12.729456 12.607809 36.791164 37.578903 36.683544 38.115276 38.048248 25.846893 23.586176 24.147913