Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01116 ATGTCTTCTCTCCCATTTGCTTTCTTCTTCCTCCTCCTCTCCTTCCATTTCTTCTCGGCAATTAGCATCGATTTCCTCGTCGGCGATGAGGATGGCTGGGCAGTCCCTAAACCAAAAGAAGCTGACAAATACAACAAATGGGCTTCCCACAACAGATTCAATATCGATGACACTGTCCATTTCAAGTACGAGAAAGATTCGGTGATGATGGTGACAGAGGAAGAGTACAAACAGTGTTTTTCTTCAAAGCCTCTGTTTTATGAGAACAATGGTGATAGTGTTGTGAAACTTGATAGAGCCGGTTTGTTCTATTTCATTAGTGGAGTTTCAGGGCATTGTCAGAAAGGCCAAAGAATGATAATCAAAGTGTTGGAACCTATAAATCCTCCTCACCCACCAACTGCTCCACCAAATAACAAGAATGCTGCAGCAGCCTCTTCTAATTTGCTCTCTGTTTCATCTTCAATCTTGGGAGTGTTCTTGATGTTGTTCTTTGCTCTGTTTCTGTCCATTTGA 516 42.25 MSSLPFAFFFLLLSFHFFSAISIDFLVGDEDGWAVPKPKEADKYNKWASHNRFNIDDTVHFKYEKDSVMMVTEEEYKQCFSSKPLFYENNGDSVVKLDRAGLFYFISGVSGHCQKGQRMIIKVLEPINPPHPPTAPPNNKNAAAASSNLLSVSSSILGVFLMLFFALFLSI 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26369594 26370232 + ClCG04G011350.1 Cla04g01116 271344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01116 171 PANTHER EARLY NODULIN-LIKE PROTEIN 6 9 160 - -
Cla04g01116 171 CDD OsENODL1_like 24 124 IPR041846 -
Cla04g01116 171 Gene3D - 22 126 IPR008972 -
Cla04g01116 171 ProSiteProfiles Phytocyanin domain profile. 23 125 IPR003245 GO:0009055
Cla04g01116 171 SUPERFAMILY Cupredoxins 23 124 IPR008972 -
Cla04g01116 171 PANTHER BLUE COPPER PROTEIN 9 160 IPR039391 GO:0009055
Cla04g01116 171 Pfam Plastocyanin-like domain 40 117 IPR003245 GO:0009055
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01116 Cla-Chr4:26369594 Cla09g01907 Cla-Chr9:36736478 5.87E-45 dispersed
Cla04g01116 Cla-Chr4:26369594 Cla10g00524 Cla-Chr10:6934499 1.77E-23 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01116 - - csv:101205884 245.358