Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01117 ATGCTGCCGTTAGACTCCCCTCTCATCTATCTCACTCTCTCGCAGACACTTTCGCCAGGCCACTCGCCGCCGCTCCCCCCAGACACCGTCGTCTGCCGTCGGTCAGGCCAGCCCGCCGCTCCAGCCACCTCAATTCGCCGGTTGTCGTTCGTGGCTGCCTGCCGTCACGTCCGAGGTCCAGAGAGCCCAATAATTTTATTTAAACGGTCCGAGTTTGTCGGCCCAAATGTGAACGTCCAACTCGACTCACTTATTGAAGTCGTTCAAGTTCGTGGTATCAACTTCTTCAATTTCATTACTTTTATTAGAAATTCTTACGAGAATCATCACTTGGAAGTCAGTGCCATGGTCGTACTGGATGAGAAAGTTCCTTCCTCATCAGAGGTAGAGGCAATGAACAAAAGGCGCAAGAGGAAGAGACCCAAGAAAAATCTTCCTTCAACGGGTGCGGAAGAATCGGAACTTCAAAATCCAATGAAAGGTGAAGAAGAAGGGGAAGGAGATGCTGAAGGCAATGTATCAGTGAAGAAAGTGGAAAAAGACGAGAAGATGAAGAAGAAGAGGAAGACAAAAATGAAGAGGAAGGACGAGTTGGAGGAGGAAGGACATGAAAATGCTAACGATGACGATGGCGAGGATGGCGTGGAAGGGAAGGTTGAGGAGGATGAGGAGAAAGAGAACGAGGAAAAGAAGTTTAAGACTGTTGGATCAGGAATTATGAGTACTGTTTCATTTGATTCGCTTGACTTGTCGGAGAAAACTCTCCGGGCGATTAAAGACATGGGATTTGAGCATATGACTCAGATTCAAGCCAGAGCAATTCCGCCTTCTCTAGTTGGGAAAGATATCCTTGGAGCTGCAAGGACAGGATCCGGGAAAACTCTTGCCTTTCTTATACCAGCTGTGGAGCTCCTACATCACATCTGCTTTACTCCTCGTAATGGAACTGGTGTTATAGTTATTTGCCCAACACGGGAGCTTGCAATGCAGACACATGAAGTGGCAAAAGAGCTTCTCAAATATCATTCACAGACGCTTGGCCTTGTTACTGGTGGTTCTAGCCGACAAGCTGAGGCTGATCGTATTACAAAGGGGGTTAATCTATTAATAGCAACCCCTGGTCGACTTCTTGACCATCTTCAGCATACCAAGAATTTTGTGTTTAAAAATTTGAAGGTAATGTGGCCTATTTTTTCTTTGGTTGCTATTATTGATTGCCTCATAATTGATGAAGCAGACAGGATATTGGAAACCAATTTTGAGGAGGAAATGAAACAAATTATAAAGCTTCTACCAAAGGTAATTGACCATTGTTGTATGTCTTTTACGATAATTGACAATAGGCAGACTGCTTTATTCTCAGCAACCCAAACACAAAAGGTTTGTCTTTGTTCATTGCATTCAACTTTTATACTTCTTCTCTCCTTGGGTTTTCTTCTCTTGTACCATGATGTATATATGGTTGAAGATCTTGTTCGCTTGTCATTTCAGTCAACTCCTATTTATATTGACGTGGATGATGGAAGAACAAAGGTCACCAACGAGGGGTTGCAACAAGGTTACTGTGTTGTGCCTAGTTCAAAAAGATTCATTCTTCTATATTCCTTCTTGAAGAGAAATTTATCTAAGAAAGTAATGGTCTTCTTCTCGTCCTGTAACTCTGTAAAATTCCATGCGGACCTTCTTAGATACATTAAGGTCGACTGCATGGATATCCATGGAAAGCAAAAGCAGCAGAAGAGAACTTCTACCTTCTTTTCCTTCATCAAGGCCGAGACTGGGATCCTACTATGTACTGATGTTGCTGCACGTGGACTTGACATTCCCGCCGTTGATTGGATTGTGCAGTACGATCCTCCAGATGAACCCAAGGAATATATTCACAGAGTCGGCCGAACAGCTCGAGGCGAAGGTAGCAGAGGAAATGCCCTACTTTTCTTGATGCCTGAAGAGCTTCAATTTCTTCACTATCTAAAGGTCTGGTATTTGAGTGTGGTTCATGTTCTCTATTTGGCAGGCAGCAAAAGTTCCCGTCAAAGAGAGAAACTGGTGGGCAGCAATTATTATTTGAACAAGTCGGCTAAGGATGCTTACAGATCCTATATATTAGCTTACAATTCACATTCTATGAAAGATATTTTCAATGTCCACCGCCTTGATCTCCAGGGTATTGCTGCTTCATTCTGCTTTTCCAACCCTCCAAAGGTCAACCTTAACATTGACAGCAGTGCTTCAAAATTCAGGAAGAAAACGCGTAAAGTAGAAGGGAGCAGCAACAGATTCATTAAGAGCAATCCTTATGGGAGGAAGAATGAGGGAGATGAGAGACAGTTTGTAAGATACTAG 2346 43.48 MLPLDSPLIYLTLSQTLSPGHSPPLPPDTVVCRRSGQPAAPATSIRRLSFVAACRHVRGPESPIILFKRSEFVGPNVNVQLDSLIEVVQVRGINFFNFITFIRNSYENHHLEVSAMVVLDEKVPSSSEVEAMNKRRKRKRPKKNLPSTGAEESELQNPMKGEEEGEGDAEGNVSVKKVEKDEKMKKKRKTKMKRKDELEEEGHENANDDDGEDGVEGKVEEDEEKENEEKKFKTVGSGIMSTVSFDSLDLSEKTLRAIKDMGFEHMTQIQARAIPPSLVGKDILGAARTGSGKTLAFLIPAVELLHHICFTPRNGTGVIVICPTRELAMQTHEVAKELLKYHSQTLGLVTGGSSRQAEADRITKGVNLLIATPGRLLDHLQHTKNFVFKNLKVMWPIFSLVAIIDCLIIDEADRILETNFEEEMKQIIKLLPKVIDHCCMSFTIIDNRQTALFSATQTQKVCLCSLHSTFILLLSLGFLLLYHDVYMVEDLVRLSFQSTPIYIDVDDGRTKVTNEGLQQGYCVVPSSKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHADLLRYIKVDCMDIHGKQKQQKRTSTFFSFIKAETGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGSRGNALLFLMPEELQFLHYLKVWYLSVVHVLYLAGSKSSRQREKLVGSNYYLNKSAKDAYRSYILAYNSHSMKDIFNVHRLDLQGIAASFCFSNPPKVNLNIDSSASKFRKKTRKVEGSSNRFIKSNPYGRKNEGDERQFVRY 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26371353 26376653 - ClCG04G011360.2 Cla04g01117 271345

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01117 781 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 408 416 IPR000629 -
Cla04g01117 781 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 404 652 IPR027417 -
Cla04g01117 781 MobiDBLite consensus disorder prediction 202 223 - -
Cla04g01117 781 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 274 475 IPR014001 -
Cla04g01117 781 Pfam Helicase conserved C-terminal domain 533 636 IPR001650 -
Cla04g01117 781 Gene3D - 513 756 IPR027417 -
Cla04g01117 781 PANTHER RNA HELICASE 222 779 - -
Cla04g01117 781 SMART ultradead3 262 485 IPR014001 -
Cla04g01117 781 CDD SF2_C_DEAD 517 647 - -
Cla04g01117 781 MobiDBLite consensus disorder prediction 124 232 - -
Cla04g01117 781 PANTHER ATP-DEPENDENT RNA HELICASE DDX18 222 779 - -
Cla04g01117 781 Gene3D - 172 469 IPR027417 -
Cla04g01117 781 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 243 271 IPR014014 GO:0003724
Cla04g01117 781 MobiDBLite consensus disorder prediction 767 781 - -
Cla04g01117 781 Pfam DEAD/DEAH box helicase 267 460 IPR011545 GO:0003676|GO:0005524
Cla04g01117 781 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 655 IPR027417 -
Cla04g01117 781 SMART helicmild6 556 637 IPR001650 -
Cla04g01117 781 Pfam Domain of unknown function (DUF4217) 679 736 IPR025313 -
Cla04g01117 781 MobiDBLite consensus disorder prediction 156 181 - -
Cla04g01117 781 CDD DEADc_DDX18 254 504 IPR044773 GO:0003724|GO:0005524
Cla04g01117 781 MobiDBLite consensus disorder prediction 759 781 - -
Cla04g01117 781 SMART DUF4217_3 675 738 IPR025313 -
Cla04g01117 781 Coils Coil 181 201 - -
Cla04g01117 781 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 516 677 IPR001650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01117 K13179 DDX18, HAS1; ATP-dependent RNA helicase DDX18/HAS1 [EC:3.6.4.13] - csv:101209673 926.006
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01031 Cla-Chr4:25453164 Cla04g01117 Cla-Chr4:26371353 0 dispersed
Cla04g01117 Cla-Chr4:26371353 Cla11g00123 Cla-Chr11:1570377 1.67E-77 dispersed
Cla06g00752 Cla-Chr6:10024090 Cla04g01117 Cla-Chr4:26371353 8.57E-12 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g378 . Blo16g00145 . . . Bpe13g00336 Bma06g00006 . Cmo13g01088 . . . . . . Cpe20g00101 . . . . . . . . . . . . . . . . . . . . Csa01g00641 Chy12g01461 Cme12g01901 . . . . . . . . . . . Cma13g01047 . Car13g00880 . . . Bhi08g01037 . . . . . . Cla04g01117 Cam04g1170 Cec01g1681 Cco01g1729 Clacu04g1198 Cmu04g1177 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003223 0 3 1 2 1 2 2 2 2 2 2 2 2 2 1 2 2 3 2 2 2 2 1 1 1 2 2 1 1 1 51
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla04g01117 Cla_Chr04 FPKM 5.829141 5.138194 4.841476 3.993459 5.588958 6.178977 6.433149 4.658623 3.692336 3.465789