Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01120 ATGGGTAGTGGTAGAAGAAGGAGGAAGCAACATTTCAGAAGAATTCATGCCTTTCCTTGCGGTAGAGCTTCTTTCAAAGATGAACACTCTTTAATTGGAGGGCCAGGGTTCTCAAGGGTAGTTTACTGTAATGATCCTGATAGTTTTGAGGCCAGTCTTCTCAACTATGGAGGCAATTATGTCAAAACTTCAAAGTATACTATTGCTTCATTCTTCCCCAAATCATTGTTTGAGCAATTCAGAAGAGTTGCCAACTTGTACTTCCTCCTTTGTGCTTTGCTTTCCTTTAGCCCCCTTTCGCCGTATTCGCCGGTCAGCAATGTTCTTCCTCTTGTTGTTGTTATTGGAGTCACCATGGGCAAAGAAGCTCTTGAAGATTGGAGGAGAACCAAACAGGACATGGAGATGAATAACAGGAAGGTGAAAGTACATATTAGAGATGGTGAGTTTGTTGAGACTAAATGGATGGACTTGAAAGTTGGGGATGTAGTTAAAGTGGAGAAAGATGAATTCTTCCCTGCTGATCTCATTTTACTTTCATCAAGTTATGAGGAAGCGATTTGCTACGTCGAGACAATGAATCTTGATGGGGAAACAAATTTGAAACTGAAGAATGCATTAGAAGCAAGCTCAAACTTACACGAGGATTCGAGCTTCCAGAATTTCAAGGCAATAATAAAATGTGAAGACCCCAATGCAAATTTGTATTCCTTTGTGGGAAGTATGGAGCTTGAAGAGCAGCAACATCCACTGAGCCCTCAACAGCTTCTTCTTCGAGACTCGAAGCTTCGAAACACTGATTTTATATATGGTGTGGTGATTTTCACAGGTCATGATACAAAGGTTATTCAGAACTCAACAGCTCCTCCTTCCAAGAGAAGCAAGATTGAGAAGAGGATGGACAAGATTGTGTTCTTACTGTTTGCTGTCTTGGTTTTGATATCAATTGCTGGGTCGATTTTCTTTGGTGTTACGACTAGAGATGATATAGAAAACGGAAGAAGTACGAGATGGTACCTTAGGCCAGATGATACCACAATATATTACAACCCCAAAAATGCTCCAGCTGCAGCAATATTGCAGTTTCTGACTGCTCTTATGCTTTTTAGCTACTTGATTCCCATATCATTGTATGTTTCCATAGAAATTGTCAAAGTTCTGCAGAGTGCCTTCATCAACCAAGATGAACATATGTACCATGAGGAAACTGATAAGCCAGCTCATGCTCGTACCTCAAATTTGAATGAAGAACTTGGCCAAGTTGATACCATTCTTTCCGATAAAACGGGGACATTGACTTGCAATTCGATGGAGTTTATCAAGTGTTCGGTGGGCGGGACTGCTTACGGGCGAGGTATTACAGAAGTAGAGAGAGCTCTTGCAAGAAGAAAGGAGTCAACTTTACCTCAAAATTTAGAGGCCAACAATGCACGTCTTAGCAGCGAAAAACCATTCATTAAGGGGTTCAATTTCAAGGATGAAAGAATAATGGATGGTAACTGGGTGAAGGAGCCTAGAGCCGATGTAATCCAGAAGTTCCTACAGCTTCTGGCCATATGCCATACTGCATTGCCAGAAATTGATGAGGGAACTGGACAAATTTCTTATGAAGCTGAATCACCAGATGAGGCAGCTTTTGTGATTGCAGCCAGAGAATTCGGTTTTGAGTTCTATGAAAGGACTCAGACAAGCATTTCATTGCGGGAGTTCGATCCGACCTCGGCCAAAATTGTTGAAAGATCATATCAATTATTGGATGTTTTGGAGTTTAATAGCACAAGAAAGCGGATGTCTGTGATTGTAAGAGATGCAAAGGGACAGCTACTACTACTTTGTAAAGGAGCTGACAGTGTTATGTTTGAAAGACTTGCAAAGAACGGAAGTGAGTTTGAAGAACAGACAAAGGTGCACATCAATCAGTACGCCGACGCTGGTTTAAGAACTTTGGTTCTAGCATATCGTGAGCTGAAAGAGGAAGAATTTAATACATTTCATCAAGAATTCATCAAAGCCAAAAACACAGTGAGCACAGATCGCGATGACATAATCGATCAGTTGACAGAAACCATTGAGAAAGATTTGATTCTTCTTGGTGCTACAGCAGTTGAAGATAAACTTCAAAATGGGGTCCCTGAATGCATTGACAAACTTGCTCAGGCTGGAATTAAAATATGGGTTCTGACTGGTGATAAGATGGAAACAGCCATCAACATTGGCTTTGCTTGCAGTTTACTTAGACAAGGAATGAAGCAAATAATTATCAGCTCAGAGACTCCGGAAGGAAAAGCTTTAGACAAAGTTGAAGATGTTCACAAATCCGCAGCTATCAAGGCGTTTAAGGCAAGTGTCACTCAACAAATAACTGATGCGAAAGCATTGCTTACATCCTTGAGCGAAACCCCAGAAGCTTTGGCTTTGATAATTGATGGAAAGTCCCTCACCTATGCTTTGGAGGATGATGTGAAGGACCTATTTCTGGAGCTTGCCATTGGTTGTGCTTCAGTTATATGCTGCAGATCATCTCCTAAACAGAAAGCACAAGTTACCCAATTGGTTAAGGTTAAAACAGGCAGTACCACTCTAGCAGTTGGTGATGGTGCAAATGATGTTGGAATGCTCCAAGAAGCGGATATTGGGATTGGTATTAGCGGTGTCGAAGGGATGCAGGCAGTCATGTCCAGTGACATTGCAATAGCACAGTTTCGATATTTGGAGCGGCTGCTCCTTGTGCATGGACATTGGTGTTACAGGAGGATCTCTTCCATGATATGCTATTTCTTCTACAAGAACATTGTTTTTGGGTTCACTCTCTTCTTCTTTGAGATGTATGCATCATTCTCCGGCCAAGCTGTATACAACGACTGGTTCCTTTCTCTGTATAACGTCTTCTTTACTTCTCTCCCTGTGATCGCATTGGGAGTATTCGACCAAGATGTCTCATCCCGGTACTGTCTCAAGTTCCCACTTCTATACCAAGAAGGTGTCCAAAATGTCTTATTTAGTTGGGTTCGAGTTATCGGTTGGGTGTTCAACGGGCTACTAAGTTCTGTTATCATATTCTTCTTTTGTGTTGGGGCAATGGAACATCAAGCTTTCCGCAACAGCGGAGAGGTGGTCGGGTTGGAAATTCTTGGCGCCACCATGTACACTTGTGTTGTTTGGGTTGTAAACTGTCAAATGGCAATGTCCATCAGTTACTTCACATATATTCAACATCTCTTCATCTGGGGAAGCATCATTCTTTGGTACTTATTCCTCATGGCATATGGAGCTATAAACCCAACCATATCAACAACAGCATTTCAGGTATTCGTCGAGGCCTGTGCTCCGGCACCGTCATTTTGGATCCTCACACTAGTGGCTTTGGGAGCTTCCCTTCTCCCATACTTCATCTACGCATCGATCCAAATGCGGTTCTTCCCAATGTATCATCAAATGATTCAATGGATAAAAGCTGACGGGCAGTCGAACGATCCAGAATACTGTCAAGTAGTTAGACAGAGATCACTACGGCACACAACCGTCGGTTACACAGCTCGGTTCGAAGCATCAAAGCATTTTGAAGAAATCCCAGAAATCAAGAACCATTAG 3591 42.11 MGSGRRRRKQHFRRIHAFPCGRASFKDEHSLIGGPGFSRVVYCNDPDSFEASLLNYGGNYVKTSKYTIASFFPKSLFEQFRRVANLYFLLCALLSFSPLSPYSPVSNVLPLVVVIGVTMGKEALEDWRRTKQDMEMNNRKVKVHIRDGEFVETKWMDLKVGDVVKVEKDEFFPADLILLSSSYEEAICYVETMNLDGETNLKLKNALEASSNLHEDSSFQNFKAIIKCEDPNANLYSFVGSMELEEQQHPLSPQQLLLRDSKLRNTDFIYGVVIFTGHDTKVIQNSTAPPSKRSKIEKRMDKIVFLLFAVLVLISIAGSIFFGVTTRDDIENGRSTRWYLRPDDTTIYYNPKNAPAAAILQFLTALMLFSYLIPISLYVSIEIVKVLQSAFINQDEHMYHEETDKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSVGGTAYGRGITEVERALARRKESTLPQNLEANNARLSSEKPFIKGFNFKDERIMDGNWVKEPRADVIQKFLQLLAICHTALPEIDEGTGQISYEAESPDEAAFVIAAREFGFEFYERTQTSISLREFDPTSAKIVERSYQLLDVLEFNSTRKRMSVIVRDAKGQLLLLCKGADSVMFERLAKNGSEFEEQTKVHINQYADAGLRTLVLAYRELKEEEFNTFHQEFIKAKNTVSTDRDDIIDQLTETIEKDLILLGATAVEDKLQNGVPECIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRQGMKQIIISSETPEGKALDKVEDVHKSAAIKAFKASVTQQITDAKALLTSLSETPEALALIIDGKSLTYALEDDVKDLFLELAIGCASVICCRSSPKQKAQVTQLVKVKTGSTTLAVGDGANDVGMLQEADIGIGISGVEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRISSMICYFFYKNIVFGFTLFFFEMYASFSGQAVYNDWFLSLYNVFFTSLPVIALGVFDQDVSSRYCLKFPLLYQEGVQNVLFSWVRVIGWVFNGLLSSVIIFFFCVGAMEHQAFRNSGEVVGLEILGATMYTCVVWVVNCQMAMSISYFTYIQHLFIWGSIILWYLFLMAYGAINPTISTTAFQVFVEACAPAPSFWILTLVALGASLLPYFIYASIQMRFFPMYHQMIQWIKADGQSNDPEYCQVVRQRSLRHTTVGYTARFEASKHFEEIPEIKNH 1196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26405711 26410616 + ClCG04G011390.2 Cla04g01120 271348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01120 1196 Pfam E1-E2 ATPase 136 377 - -
Cla04g01120 1196 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 829 946 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla04g01120 1196 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 108 223 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla04g01120 1196 ProSitePatterns E1-E2 ATPases phosphorylation site. 427 433 IPR018303 -
Cla04g01120 1196 Pfam Phospholipid-translocating P-type ATPase C-terminal 891 1141 IPR032630 -
Cla04g01120 1196 Gene3D - 698 903 IPR023214 -
Cla04g01120 1196 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 4 1187 - -
Cla04g01120 1196 CDD P-type_ATPase_APLT_Dnf-like 58 1023 - -
Cla04g01120 1196 Gene3D - 544 697 IPR023299 GO:0000166
Cla04g01120 1196 SUPERFAMILY HAD-like 420 918 IPR036412 -
Cla04g01120 1196 SFLD p-type atpase 407 914 IPR044492 -
Cla04g01120 1196 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 56 1148 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Cla04g01120 1196 Pfam Cation transport ATPase (P-type) 538 623 - -
Cla04g01120 1196 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 496 699 IPR023299 GO:0000166
Cla04g01120 1196 Gene3D - 117 287 - -
Cla04g01120 1196 SUPERFAMILY Calcium ATPase, transmembrane domain M 48 1141 IPR023298 -
Cla04g01120 1196 SUPERFAMILY Calcium ATPase, transduction domain A 143 284 IPR008250 -
Cla04g01120 1196 PRINTS P-type cation-transporting ATPase superfamily signature 425 439 - -
Cla04g01120 1196 PRINTS P-type cation-transporting ATPase superfamily signature 863 882 - -
Cla04g01120 1196 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 4 1187 - -
Cla04g01120 1196 Pfam Phospholipid-translocating ATPase N-terminal 41 107 IPR032631 -
Cla04g01120 1196 SFLD C1.7: P-type atpase like 407 914 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00644 Cla-Chr4:20843465 Cla04g01120 Cla-Chr4:26405711 0 dispersed
Cla04g01120 Cla-Chr4:26405711 Cla06g00811 Cla-Chr6:11384214 0 dispersed
Cla05g02496 Cla-Chr5:36332570 Cla04g01120 Cla-Chr4:26405711 0 transposed
Cla07g00239 Cla-Chr7:2643070 Cla04g01120 Cla-Chr4:26405711 1.20E-180 transposed
Cla09g00071 Cla-Chr9:677972 Cla04g01120 Cla-Chr4:26405711 0 transposed
Cla04g01120 Cla-Chr4:26405711 Cla05g02349 Cla-Chr5:35088234 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01120 K01530 K14802 csv:101209427 2207.56