Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01124 ATGGAAAGAGCAGAGGCCAAAAACCCGAGCAGACAGCAGTCTCCGTCGTCGTCACAAACCCCTTTTTCTCCGGCAGTTCCGTTCTCAATCCTCTTATCGGAAGCAATGGGGAGTGACAGCGAAGCAGAGAAGTCGCATCAAAAGGACAAAGAAAAGGAGAAGAAGAAGCGGTTGGCTCTTGCACCAATTGCCAAACCCCTTGCCGGCAAAAAGCTCTGCAAGCGTACCCTCAAGCTTGTTCGTAAAGCTGCTGAGTACAAGTGCTTGAAGCGGGGAGTAAAGGAGGTTGTCAAAAGCATAAGGCGCGGTCAAAAAGGATTGTGTGTAATAGCTGGTAACATTTCCCCCATTGACGTGATCACTCATGTTCCAATCTTATGTGAAGAGTCAGACATTCGTTACGTATATGTTCCATCCAAGGAAGATCTTGCCAATGCGGGGTCGACCAAGAGGCCAACATGTTGTGTGCTGGTACAAACTAAGCCAAACAAAGGGGAGCTTGGATCAACTGAACAAGAGAAACTCAAGGCTGACTTTGACCAAGTTGTAGCTGAAAAAGGAAAAATCCTTTTGTCTGAACATTGGTGTGGCGTGGTTGCGTGTGCCAAAAGCCGCAATGAATCACTAGCGCGACACACCAACAAAGCTTTGCTCCCACAGGGGGAAATGGGTTGCTCCTTTTCTGGGTTGAATGCTCTGTACGACGCTGTCAATGGTGGTGGAGACATTTGGATCAACGAAAATCGGTTTAGGATCGTCAGGCAGCTTGGAGAAGGTGGGTTCGCCTTTGTGTTTTTGGTCAAAGAGGTTACTTCCGATTCTTCTTCACCCTCTGGTGGCGGTCTCGCCAAGAAATTGAAGGACCCATCTCGTCTTTCCGGTGATGGAACTTATGCTTTGAAAAAGGTTCTAATTCAGAGCAGTGAACAATTGGAGCTGGTGAGGGAGGAGATTCGTGTTTCGTCGCTTTTTAGTCATCCCAATCTACTTCCACTTCTTGACCATGCTATAATTGCAGTTAAGTCATCTACTGACGGATCTGTGAAACATGAAGCATACTTGTTGTTTCCAGTTCACTTGGATGGAACATTACTGGACAATGCCCAGACAATGAAGGCTAAGAAGGAATTCTTTTCTACATTGGATGTTCTGGAGATATTTCGCCAGCTTTGTGCAGGGCTTAAGCATATGCACAGTAATGAACCTCCTTATGCACACAATGATGTGAAACCTGGTAATGTTCTTTTAACTCATAGAAAAGGGAAGTCACCTCTCGCAATATTGATGGATTTTGGTAGTGCTCGACCTGCTAGAAAAGAAATCCGTTCTCGTTCAGAGGCACTCCAATTGCAGGAATGGGCATCTGAGCATTGTTCTGCACCTTTCCGAGCACCGGAGCTGTGGGATTGTCCAAGCCATGCTGACATTGATGAGAGAACTGATATCTGGTCATTGGGATGTACTTTGTATGCAATAATGTACGGGTTATCTCCATTTGAGTATGCACTTGGAGAATCTGGTGGAAGCCTTCAATTAGCAATTGTTAATGCACAAATCAAATGGCCAGCAGGGCCTAATCCTCCATATCCTGATGCTCTCCACCAGTTTATAAAATGGATGCTTCAGCCCCAGGCTGCAGTTCGACCTCGGATCGACGATATCGTCCTTCATGTTGACAAGTTGATTGCAAAGTTTTCTAATTAG 1704 45.89 MERAEAKNPSRQQSPSSSQTPFSPAVPFSILLSEAMGSDSEAEKSHQKDKEKEKKKRLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKEVVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESDIRYVYVPSKEDLANAGSTKRPTCCVLVQTKPNKGELGSTEQEKLKADFDQVVAEKGKILLSEHWCGVVACAKSRNESLARHTNKALLPQGEMGCSFSGLNALYDAVNGGGDIWINENRFRIVRQLGEGGFAFVFLVKEVTSDSSSPSGGGLAKKLKDPSRLSGDGTYALKKVLIQSSEQLELVREEIRVSSLFSHPNLLPLLDHAIIAVKSSTDGSVKHEAYLLFPVHLDGTLLDNAQTMKAKKEFFSTLDVLEIFRQLCAGLKHMHSNEPPYAHNDVKPGNVLLTHRKGKSPLAILMDFGSARPARKEIRSRSEALQLQEWASEHCSAPFRAPELWDCPSHADIDERTDIWSLGCTLYAIMYGLSPFEYALGESGGSLQLAIVNAQIKWPAGPNPPYPDALHQFIKWMLQPQAAVRPRIDDIVLHVDKLIAKFSN 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26425301 26433732 - ClCG04G011450.2 Cla04g01124 271352

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01124 567 MobiDBLite consensus disorder prediction 36 57 - -
Cla04g01124 567 ProSiteProfiles Protein kinase domain profile. 250 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g01124 567 Gene3D Transferase(Phosphotransferase) domain 1 238 566 - -
Cla04g01124 567 SUPERFAMILY Protein kinase-like (PK-like) 242 557 IPR011009 -
Cla04g01124 567 PANTHER SERINE/THREONINE-PROTEIN KINASE 16 223 566 - -
Cla04g01124 567 CDD STKc_16 249 563 - -
Cla04g01124 567 PRINTS Ribosomal protein L7A/RS6 family signature 89 103 IPR018492 -
Cla04g01124 567 PRINTS Ribosomal protein L7A/RS6 family signature 134 148 IPR018492 -
Cla04g01124 567 PRINTS Ribosomal protein L7A/RS6 family signature 108 121 IPR018492 -
Cla04g01124 567 PRINTS Ribosomal protein L7A/RS6 family signature 124 134 IPR018492 -
Cla04g01124 567 ProSitePatterns Protein kinases ATP-binding region signature. 256 285 IPR017441 GO:0005524
Cla04g01124 567 SMART serkin_6 250 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g01124 567 MobiDBLite consensus disorder prediction 39 57 - -
Cla04g01124 567 Pfam Protein kinase domain 296 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g01124 567 MobiDBLite consensus disorder prediction 8 24 - -
Cla04g01124 567 ProSitePatterns Serine/Threonine protein kinases active-site signature. 404 416 IPR008271 GO:0004672|GO:0006468
Cla04g01124 567 Gene3D - 56 183 IPR029064 -
Cla04g01124 567 SUPERFAMILY L30e-like 56 167 IPR029064 -
Cla04g01124 567 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 77 161 IPR004038 -
Cla04g01124 567 MobiDBLite consensus disorder prediction 1 24 - -
Cla04g01124 567 PRINTS High mobility group-like nuclear protein signature 75 90 IPR002415 GO:0003723|GO:0005730
Cla04g01124 567 PRINTS High mobility group-like nuclear protein signature 92 102 IPR002415 GO:0003723|GO:0005730
Cla04g01124 567 PRINTS High mobility group-like nuclear protein signature 62 75 IPR002415 GO:0003723|GO:0005730
Cla04g01124 567 PRINTS High mobility group-like nuclear protein signature 136 148 IPR002415 GO:0003723|GO:0005730
Cla04g01124 567 PANTHER - 223 566 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01124 K08856 STK16; serine/threonine kinase 16 [EC:2.7.11.1] - csv:101208936 682.945
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01124 Cla-Chr4:26425301 Cla10g01200 Cla-Chr10:26659224 8.57E-16 dispersed
Cla04g01124 Cla-Chr4:26425301 Cla06g01511 Cla-Chr6:28635390 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g402 Blo04g00807 . . . . . . . . Cmo18g00014 . . . . . . . . . . . . . . . . . . . . . Cone2ag0778 . . Cone19ag0021 Lsi02g00149 Csa01g00634 . . . . . Bda14g00900 . Bpe15g00558 Bma03g00875 . . . . Cma13g01052 Cma18g00013 Car13g00885 . . . . . . . . . . Cla04g01124 Cam04g1178 Cec01g1690 Cco01g1737 Clacu04g1206 Cmu04g1185 Cre01g1483 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002165 2 3 1 2 1 2 2 2 2 2 1 2 2 2 2 4 2 2 4 2 2 2 2 2 3 1 2 5 2 1 64
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80516 PF00069 Pkinase 2.60E-28 CL0016 Cla PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla04g01124 Cla_Chr04 FPKM 11.12266 13.59965 17.629831 19.266802 7.056755 6.379276 7.723339 26.707726 26.746201 26.158529