Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01138 ATGGCGACAAAATCCGAGAAATTTTCTGCGGATTTTGTGATGGGTGGAGTGGCTGCGATTGTAGCCAAAACTGCAGCGGCCCCCATTGAGAGAGTCAAGCTTTTGTTGCAGAATCAGGGAGAGATGATAAAGAGAGGGCATCTTAAGAAACCATATCTGGGCATTCATCACTGTTTCAGAACAGTTTTGAGAGAAGAGGGTCTTTTCTCGCTATGGAGGGGAAATCAGGCTAATGTTATTCGATATTTCCCTACTCAGGCTTTCAACTTTGCGTTCAAAGGTTATTTCAAAACGAAATTTGGGCGCTCGAAAGAGAAAGATGGATACATCAAGTGGTTTGCTGGAAATGTTGCTTCAGGAAGTGCTGCAGGAGCAACTACGTCTTTGTTTCTGTATCATTTGGATTATGCACGAACTCGACTTGGCACCGATGCCAAGGATGTTGGCAGTAACAGTCAGCGCCAGTTTAAAGGGATATTGGATGTCTACAGAAAAACATTGTCGAGTGATGGAATTGTTGGTCTATACCGAGGATTTAGTGTTTCGATCGTGGGAATTACTCTGTACAGGGGCATGTATTTTGGGATTTACGACACTTTGAAGCCTCTTGTTCTGGTTGGACAGTATGAGGGGAACTTTTTTGCTAGTTTCTTATTGGGGTGGAGTATTACAACCTTTTCTGGGGTATGTGCTTATCCTTTCGACACACTGCGACGAAGAATGATGCTTACATCCGGACAAACCCTGAAGTACCGTAGTGGTTTGCATGCCTTTTCTGAGATCATTCGCCATGAGGGCATATCTGCTCTTTTTCGAGGAGTCACAGCCAATATGCTTGTTGGTGTTGCAGGGGCTGGCGTTCTTGCAGGTTATGATCAGTTGCACGAAATCGCATGTAGGCATGGTTATTCCTTTGGAGGGCAGCATCAAATAGCCTCAAAATGA 945 44.55 MATKSEKFSADFVMGGVAAIVAKTAAAPIERVKLLLQNQGEMIKRGHLKKPYLGIHHCFRTVLREEGLFSLWRGNQANVIRYFPTQAFNFAFKGYFKTKFGRSKEKDGYIKWFAGNVASGSAAGATTSLFLYHLDYARTRLGTDAKDVGSNSQRQFKGILDVYRKTLSSDGIVGLYRGFSVSIVGITLYRGMYFGIYDTLKPLVLVGQYEGNFFASFLLGWSITTFSGVCAYPFDTLRRRMMLTSGQTLKYRSGLHAFSEIIRHEGISALFRGVTANMLVGVAGAGVLAGYDQLHEIACRHGYSFGGQHQIASK 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26568095 26570330 + ClCG04G011580.1 Cla04g01138 271366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01138 314 SUPERFAMILY Mitochondrial carrier 6 294 IPR023395 -
Cla04g01138 314 Gene3D Mitochondrial carrier domain 2 303 IPR023395 -
Cla04g01138 314 PRINTS Mitochondrial carrier protein signature 11 24 IPR002067 GO:0055085
Cla04g01138 314 PRINTS Mitochondrial carrier protein signature 24 38 IPR002067 GO:0055085
Cla04g01138 314 PRINTS Mitochondrial carrier protein signature 74 94 IPR002067 GO:0055085
Cla04g01138 314 PRINTS Mitochondrial carrier protein signature 126 144 IPR002067 GO:0055085
Cla04g01138 314 PRINTS Mitochondrial carrier protein signature 176 194 IPR002067 GO:0055085
Cla04g01138 314 PRINTS Mitochondrial carrier protein signature 220 242 IPR002067 GO:0055085
Cla04g01138 314 Pfam Mitochondrial carrier protein 6 102 IPR018108 -
Cla04g01138 314 Pfam Mitochondrial carrier protein 112 204 IPR018108 -
Cla04g01138 314 Pfam Mitochondrial carrier protein 212 297 IPR018108 -
Cla04g01138 314 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 1 308 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cla04g01138 314 PANTHER ADP,ATP CARRIER PROTEIN ER-ANT1 1 308 - -
Cla04g01138 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 211 297 IPR018108 -
Cla04g01138 314 PRINTS Adenine nucleotide translocator signature 8 20 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cla04g01138 314 PRINTS Adenine nucleotide translocator signature 52 73 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cla04g01138 314 PRINTS Adenine nucleotide translocator signature 85 97 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cla04g01138 314 PRINTS Adenine nucleotide translocator signature 111 124 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cla04g01138 314 PRINTS Adenine nucleotide translocator signature 216 232 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cla04g01138 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 6 99 IPR018108 -
Cla04g01138 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 111 203 IPR018108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01138 Cla-Chr4:26568095 Cla08g01581 Cla-Chr8:28491837 1.21E-126 dispersed
Cla04g01138 Cla-Chr4:26568095 Cla08g01677 Cla-Chr8:29393289 3.24E-28 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01138 K05863 - csv:101207715 566.614