Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01139 ATGGGGAGAGGGAGAGTGCAATTGAAGAGGATTGAGAACAAAATTAATAGGCAAGTGACTTTCTCAAAAAGAAGGTCAGGTTTATTGAAGAAAGCTCATGAAATTTCAGTTCTTTGTGATGCTGAAGTTGCTCTTATTGTCTTCTCCACAAAGGGGAAGCTCTTTGAATACTCAACTGATTCTTGTATGGAGAAAATCCTTGAGCGTTATGAAAGATATTCATATGCAGAGAGGAGACTTGTTGCAAATGATAATCAATCAAATGGAAATTGGACTCTTGAACATGCAAAGCTTAAAGCCAGAATAGAGGTTCTACAGAAAAACCACAGGCATTTCATGGGGGAAGATCTTGACTCATTGAGCCTAAAAGAACTTCAAAATATTGAGCAACAACTTGATTCTGCACTCAAGCATATAAGAGCTAGGAAGAACCAACTCATGCATGAATCCATTTCAGAGCTTCAGAAAAAGGACAAGGCACTACAAGAACAAAATAACATGTTAGCTAAGAAGATAAAGGAAAAGGAGAAATTACAAGCTCAAAATCCACAAATGGAACAGCAGCAGAATAGCCCTGCCATGGAATCTTCTCCCCTTCTTTTACCTCAGCCATTCCAATCCCTTAACATGAGTTGTCCATACTCAACACACGGCACCGGAGACGATGACTCTGCCGCGAATCATGACAGATCCAGTGCCCTCCTCCCACCGTGGATGCTCCGCCACCACCTCGGTGATTAA 741 41.3 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMEKILERYERYSYAERRLVANDNQSNGNWTLEHAKLKARIEVLQKNHRHFMGEDLDSLSLKELQNIEQQLDSALKHIRARKNQLMHESISELQKKDKALQEQNNMLAKKIKEKEKLQAQNPQMEQQQNSPAMESSPLLLPQPFQSLNMSCPYSTHGTGDDDSAANHDRSSALLPPWMLRHHLGD 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26574685 26580894 - ClCG04G011600.2 Cla04g01139 271367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01139 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cla04g01139 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 216 - -
Cla04g01139 246 Pfam K-box region 85 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cla04g01139 246 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cla04g01139 246 MobiDBLite consensus disorder prediction 181 221 - -
Cla04g01139 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cla04g01139 246 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Cla04g01139 246 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Cla04g01139 246 MobiDBLite consensus disorder prediction 176 230 - -
Cla04g01139 246 Coils Coil 151 188 - -
Cla04g01139 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cla04g01139 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cla04g01139 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cla04g01139 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cla04g01139 246 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cla04g01139 246 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Cla04g01139 246 Coils Coil 122 145 - -
Cla04g01139 246 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL8 HOMOLOG 1 216 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01139 Cla-Chr4:26574685 Cla07g01524 Cla-Chr7:32430415 8.64E-88 dispersed
Cla11g01441 Cla-Chr11:28033207 Cla04g01139 Cla-Chr4:26574685 1.16E-13 dispersed
Cla04g01139 Cla-Chr4:26574685 Cla04g01140 Cla-Chr4:26590560 2.11E-42 tandem
Cla01g02508 Cla-Chr1:38740495 Cla04g01139 Cla-Chr4:26574685 1.54E-40 transposed
Cla04g01139 Cla-Chr4:26574685 Cla07g01523 Cla-Chr7:32406091 3.84E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60942 PF01486 K-box 3.40E-30 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01139 K09264 K09260 csv:101207225 413.305