Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla04g01140 | ATGGGAAGAGGAAGAGTAGAATTGAAGAGAATTGAGAACAAAATTAACAGGCAAGTCACTTTTGCCAAGAGGAGAAATGGTTTGCTTAAGAAAGCTTATGAACTCTCAGTTCTTTGTGATGCTGAACTTGCTCTCATCATCTTCTCTAACCGTGGCAAGCTCTTTGAGTTTTGTAGTGGTTCTAGCTCGACTAGCTGTGTTTATCTCTCTATAGATCTAAGTCGTCTTGTTAAACATTTTGAAAACAAATTCGTAGATTATGATAGTTTGTGTTTAGGATCAGACATGATGTTTGAGCTGAGAGATAAATTTTGTTTGGTTGTGATTATAAGCATGGCCAAAACGCTCGAGAAATATCGAAGGTGTAGTTATGGTATACTGGATGCTACTCGTCAAGTAAATGAGAACCATCCACAGAGCTTTGATGATTATTTGAACCTAAAAGCCACAGTTGAATTCATGCAGCAATCTCAAAGAAACCTTTTGGGAGAAGATTTAGGTCCATTGAATACCAAGGAACTTGAGCAACTTGAACATCAATTGGAGACATCCTTGGAGCGCATTAGATCCACAAAGACACAAAGCCTACTTGATCAGCTTGCAGAACTTCAACACAAGGTACACATATCTTTATATATACTTAGTTTGGGATTGCACTCGTTTTCGTGTATCTCACTCAATTGTCTAACTATAATTTGTGACCTTGAAGAAAGCAGTGCACAACTCACGGCGGCGGCCGCCACATGGGGCTGGGAAGGGGCCGCCGGAGGCCACAGCATGGAGTATCCCAGCCGTGTTGCTTCACAATCAGACGCCTTCTTCCACCCCATAATTCAACCCACTCCGACTTTACAAATTGGGTACAATTCTGTTGGGTCAACGGGGTTGAATAGTGTTGAACCTCCATCCCAAAATGCCAATAATCCGTATCACCTTGGCTGGATGCTTTAA | 951 | 41.64 | MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAELALIIFSNRGKLFEFCSGSSSTSCVYLSIDLSRLVKHFENKFVDYDSLCLGSDMMFELRDKFCLVVIISMAKTLEKYRRCSYGILDATRQVNENHPQSFDDYLNLKATVEFMQQSQRNLLGEDLGPLNTKELEQLEHQLETSLERIRSTKTQSLLDQLAELQHKVHISLYILSLGLHSFSCISLNCLTIICDLEESSAQLTAAAATWGWEGAAGGHSMEYPSRVASQSDAFFHPIIQPTPTLQIGYNSVGSTGLNSVEPPSQNANNPYHLGWML | 316 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 26590560 | 26594413 | - | ClCG04G011610.2 | Cla04g01140 | 271368 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla04g01140 | 316 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 107 | 300 | - | - | |
Cla04g01140 | 316 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Cla04g01140 | 316 | Coils | Coil | 174 | 194 | - | - | |
Cla04g01140 | 316 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 64 | - | - | |
Cla04g01140 | 316 | PANTHER | DEVELOPMENTAL PROTEIN SEPALLATA 1 | 1 | 64 | - | - | |
Cla04g01140 | 316 | PANTHER | DEVELOPMENTAL PROTEIN SEPALLATA 1 | 107 | 300 | - | - | |
Cla04g01140 | 316 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Cla04g01140 | 316 | CDD | MADS_MEF2_like | 2 | 61 | IPR033896 | GO:0000977|GO:0045944 | |
Cla04g01140 | 316 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Cla04g01140 | 316 | ProSiteProfiles | K-box domain profile. | 137 | 222 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cla04g01140 | 316 | SUPERFAMILY | SRF-like | 2 | 63 | IPR036879 | GO:0003677|GO:0046983 | |
Cla04g01140 | 316 | Gene3D | - | 13 | 73 | IPR036879 | GO:0003677|GO:0046983 | |
Cla04g01140 | 316 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Cla04g01140 | 316 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Cla04g01140 | 316 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Cla04g01140 | 316 | Pfam | K-box region | 139 | 208 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cla04g01140 | 316 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla04g01140 | Cla-Chr4:26590560 | Cla07g01523 | Cla-Chr7:32406091 | 4.48E-79 | dispersed | |
Cla04g01139 | Cla-Chr4:26574685 | Cla04g01140 | Cla-Chr4:26590560 | 2.11E-42 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60943 | PF01486 | K-box | 6.20E-21 | No_clan | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla04g01140 | K09264 | - | csv:101204197 | 361.688 |