Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01140 ATGGGAAGAGGAAGAGTAGAATTGAAGAGAATTGAGAACAAAATTAACAGGCAAGTCACTTTTGCCAAGAGGAGAAATGGTTTGCTTAAGAAAGCTTATGAACTCTCAGTTCTTTGTGATGCTGAACTTGCTCTCATCATCTTCTCTAACCGTGGCAAGCTCTTTGAGTTTTGTAGTGGTTCTAGCTCGACTAGCTGTGTTTATCTCTCTATAGATCTAAGTCGTCTTGTTAAACATTTTGAAAACAAATTCGTAGATTATGATAGTTTGTGTTTAGGATCAGACATGATGTTTGAGCTGAGAGATAAATTTTGTTTGGTTGTGATTATAAGCATGGCCAAAACGCTCGAGAAATATCGAAGGTGTAGTTATGGTATACTGGATGCTACTCGTCAAGTAAATGAGAACCATCCACAGAGCTTTGATGATTATTTGAACCTAAAAGCCACAGTTGAATTCATGCAGCAATCTCAAAGAAACCTTTTGGGAGAAGATTTAGGTCCATTGAATACCAAGGAACTTGAGCAACTTGAACATCAATTGGAGACATCCTTGGAGCGCATTAGATCCACAAAGACACAAAGCCTACTTGATCAGCTTGCAGAACTTCAACACAAGGTACACATATCTTTATATATACTTAGTTTGGGATTGCACTCGTTTTCGTGTATCTCACTCAATTGTCTAACTATAATTTGTGACCTTGAAGAAAGCAGTGCACAACTCACGGCGGCGGCCGCCACATGGGGCTGGGAAGGGGCCGCCGGAGGCCACAGCATGGAGTATCCCAGCCGTGTTGCTTCACAATCAGACGCCTTCTTCCACCCCATAATTCAACCCACTCCGACTTTACAAATTGGGTACAATTCTGTTGGGTCAACGGGGTTGAATAGTGTTGAACCTCCATCCCAAAATGCCAATAATCCGTATCACCTTGGCTGGATGCTTTAA 951 41.64 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAELALIIFSNRGKLFEFCSGSSSTSCVYLSIDLSRLVKHFENKFVDYDSLCLGSDMMFELRDKFCLVVIISMAKTLEKYRRCSYGILDATRQVNENHPQSFDDYLNLKATVEFMQQSQRNLLGEDLGPLNTKELEQLEHQLETSLERIRSTKTQSLLDQLAELQHKVHISLYILSLGLHSFSCISLNCLTIICDLEESSAQLTAAAATWGWEGAAGGHSMEYPSRVASQSDAFFHPIIQPTPTLQIGYNSVGSTGLNSVEPPSQNANNPYHLGWML 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26590560 26594413 - ClCG04G011610.2 Cla04g01140 271368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01140 316 PANTHER SERUM RESPONSE FACTOR HOMOLOG 107 300 - -
Cla04g01140 316 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cla04g01140 316 Coils Coil 174 194 - -
Cla04g01140 316 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 64 - -
Cla04g01140 316 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 64 - -
Cla04g01140 316 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 107 300 - -
Cla04g01140 316 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cla04g01140 316 CDD MADS_MEF2_like 2 61 IPR033896 GO:0000977|GO:0045944
Cla04g01140 316 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cla04g01140 316 ProSiteProfiles K-box domain profile. 137 222 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cla04g01140 316 SUPERFAMILY SRF-like 2 63 IPR036879 GO:0003677|GO:0046983
Cla04g01140 316 Gene3D - 13 73 IPR036879 GO:0003677|GO:0046983
Cla04g01140 316 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cla04g01140 316 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cla04g01140 316 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cla04g01140 316 Pfam K-box region 139 208 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cla04g01140 316 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01140 Cla-Chr4:26590560 Cla07g01523 Cla-Chr7:32406091 4.48E-79 dispersed
Cla04g01139 Cla-Chr4:26574685 Cla04g01140 Cla-Chr4:26590560 2.11E-42 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60943 PF01486 K-box 6.20E-21 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01140 K09264 - csv:101204197 361.688