Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01143 ATGAATTCAGACAAACACAAATTCCTAACTGTCTCAGCCGCTTTCTTTTTATCTATGATTTCTCTAATAGCGGCATTCGACTCGCTGGACCCAAATGGAAAAATCGAAATCAAGTGGGATGTCATGTACTGGACTGCAGATGGTTATGTGGCAACTGTGACTATAACAAACTCTCAGACGTATCGACATATCACGAGCCCCGGATGGACCTTGGGATGGGCATGGGCAAAGAGAGAGGTTATCTGGTCGATGCAGGGAGCTGAAGCTACTGATCAAGGAGATTGTTCCACATTTCCAGAAACTATCCCACACAGTTGCAAAAGAGATCCATCAGTGGTTGACTTACTTCCAGGTGCTCCTTATAACAAACAGGTAGCTATGTGCTGCAAAGGTGGTATTTTGACATCTTGGGGACAAGATCCTTCATCTGCTGTCTCTGCCTTTCAATTGACTGTTGGTCGTTCCGGTAGTTCAAATAAAACAGTGAGACTTCCTAAGAATTTCACCTTGTATGGTCCCGGGCTGGGTTACACATGTGGCCAAGCAAAGATTGCTCCCCCATCAGCCTTCTATTCATCTGATGGTCGTCGAAAAACTAATGCATTGATGACTTGGAATGTGACATGCTCTTACTCGCAGTTTCTTGCTTCTGAAACACCAACCTGCTGTCTCTCAATGTCATCTTTCTATAACTCAAAAATCACTCCTTGTAAAGCATGTGCTTGTGGCTGCCAAGACAGAGCGACTTGTATCCGGAGTGAATCAGATCTTCAAAGCGTAACAGGATTGAATGCACCTACAAATGACAGTGCTCCATTGCTGCAGTGCACGATACATAACTGTCCAATTCAAGTCCACTGGCATGTTAAGGAAAACTACAAGGGATATTGGCGGGTCAAGATAACCATCAGCAATCTCAACTATCAATTTAACTATTCACAATGGACTCTTGTCGTTGAGCACCCCAATTTCAACAACACAGTGGAAGTTTATAGCTTTGTCCATAAGCCACTTACCCCTTTCATCTCTAAGAACGACACAGCTCTGTTCCATGGCTTAAAATCTTTCAATGATGTGCTACTTCAAGCAGGGCCAAATGGAAACGTCTACTCAGAGATGATTTTTCAGAAGGATTCAACATTTACATTGGAACAGGGCTGGGCTTTCCCTCGAAAAGTTTACTTTGATGGAGATGAATGTGTGATGCCATTTCCTGATTCTTACCCCTTCCTACCCAACTTAGCTAATGCAAATCCAATTCTATTGTCAACACTAGCTTGCATTTTGCTTCCCATATTCCTTACATTTGAAGAATGCGAGAGTGGAGTCGGCGTGGAGCAGGGATTTGGCAGTAAGGGTGCTGAACTGAAAGAACTGTGGGGCAGCTTCGAACAGACCCTTCAAGATGGAAAGCTTTATAGACAAGCTGCAAGTGCTGCTGCTTCAGCTACAATGACACCGCTGAATGTTGATGTTCCACCTAATAAGCTTATGGAGCTCGTTGCAAAGGGTCTTGCGGTGGAGAAAGATGAGATATTAAGAGGGAATCCTGCTTCTGCATTGTTTGAATTTGGTTCATCAGTGCCCACTACATTTGGATCTACAGAGCCCTCTCGTGCTACTGCCATCGACTTCAGCTCTGCGCACGATACAAAAGGTTCGTCAAAGAATTTTCCAAAGCATGAGACTCGACATCTTTCGGAGCATAAGAATGTTGCCAGATGTGCAAGATTCAGTGCTGATGGGAGATTTGTTGCAACTGGAAGCGCGGATATGTCAATAAAGCTGTTTGAGGTGGCAAAGATCAAGCAGATGATGCTGCCAGATGCGAAAGATGGTCCTGTCCGACCTGTTATAAGGACATTTTATGATCACATTCAACCAATAAATGATTTAGATTTTCATCCTCAGAATACTGTTCTTATATCTGGTGCAAAAGATCACACCATAAAGTTCTTTGACTTCTCCAAATTGACTGCAAAGAAAGCATTTAGAGTTATCCAGGATACGCATAACGTGCGTTCTATATCTCTTCATCCTTCAGGAGATTATCTTTTAGCAGGAACGGATCATCCGATTGCCCACCTGTATGATGTCAATACTTTTCAGTGTTTTCTATCTGCAAATGTTCCAGAAATAGGAAATAATGGGGCCATAAATCAGGTCAGGTATTCAGCAACAGGTAGTATGTATGTCACTGCGTCAAAAGATGGTGCAGTTCGTTTATGGGACGGCATTAGTGCAAAATGTCTTCGCTCCATTGTTAGTGCACATGGCACAGCAGAGGCAACCAGTGCAAAATTTACAAAGGATGAAAGGTATGTTCTTTCTTGTGGAAAGGACTCGAGTGTAAAGCTCTGGGATGTTGGGACGGGGAGACTGGTCAAACAATATGTTGGAGCTACTCATATGCAACTGAGGTGTCAGGCTGTCTTCAATGATACTGAGGAGTTTGTGCTATCAATAGACGAACCAAGCAATGAGGTTGATCCTGCTTTTGGTTTTACTTCTCAGAGCTGTGACATTGATATTGTTATCTGGGATGCTTTGACAGCAGAGAGAGTAGCAAGGTGGCCTTCAAACCATGTCGGTGCACCACGGTGGCTCGAGCACTCTCCAACAGAGTCAGCCTTCATTTCCTGTGGGACCGATAAATCGATACGTTTTTGGAAGGAAACTCTCTAG 2685 43.65 MNSDKHKFLTVSAAFFLSMISLIAAFDSLDPNGKIEIKWDVMYWTADGYVATVTITNSQTYRHITSPGWTLGWAWAKREVIWSMQGAEATDQGDCSTFPETIPHSCKRDPSVVDLLPGAPYNKQVAMCCKGGILTSWGQDPSSAVSAFQLTVGRSGSSNKTVRLPKNFTLYGPGLGYTCGQAKIAPPSAFYSSDGRRKTNALMTWNVTCSYSQFLASETPTCCLSMSSFYNSKITPCKACACGCQDRATCIRSESDLQSVTGLNAPTNDSAPLLQCTIHNCPIQVHWHVKENYKGYWRVKITISNLNYQFNYSQWTLVVEHPNFNNTVEVYSFVHKPLTPFISKNDTALFHGLKSFNDVLLQAGPNGNVYSEMIFQKDSTFTLEQGWAFPRKVYFDGDECVMPFPDSYPFLPNLANANPILLSTLACILLPIFLTFEECESGVGVEQGFGSKGAELKELWGSFEQTLQDGKLYRQAASAAASATMTPLNVDVPPNKLMELVAKGLAVEKDEILRGNPASALFEFGSSVPTTFGSTEPSRATAIDFSSAHDTKGSSKNFPKHETRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAKIKQMMLPDAKDGPVRPVIRTFYDHIQPINDLDFHPQNTVLISGAKDHTIKFFDFSKLTAKKAFRVIQDTHNVRSISLHPSGDYLLAGTDHPIAHLYDVNTFQCFLSANVPEIGNNGAINQVRYSATGSMYVTASKDGAVRLWDGISAKCLRSIVSAHGTAEATSAKFTKDERYVLSCGKDSSVKLWDVGTGRLVKQYVGATHMQLRCQAVFNDTEEFVLSIDEPSNEVDPAFGFTSQSCDIDIVIWDALTAERVARWPSNHVGAPRWLEHSPTESAFISCGTDKSIRFWKETL 894
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26624996 26633307 + ClCG04G011640.1 Cla04g01143 271371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01143 894 ProSiteProfiles Trp-Asp (WD) repeats profile. 622 663 IPR001680 GO:0005515
Cla04g01143 894 ProSiteProfiles Trp-Asp (WD) repeats profile. 712 753 IPR001680 GO:0005515
Cla04g01143 894 SUPERFAMILY WD40 repeat-like 558 891 IPR036322 GO:0005515
Cla04g01143 894 SMART WD40_4 747 788 IPR001680 GO:0005515
Cla04g01143 894 SMART WD40_4 615 654 IPR001680 GO:0005515
Cla04g01143 894 SMART WD40_4 559 598 IPR001680 GO:0005515
Cla04g01143 894 SMART WD40_4 660 698 IPR001680 GO:0005515
Cla04g01143 894 SMART WD40_4 851 891 IPR001680 GO:0005515
Cla04g01143 894 SMART WD40_4 701 744 IPR001680 GO:0005515
Cla04g01143 894 CDD WD40 562 891 - -
Cla04g01143 894 PANTHER PROTEIN COBRA 7 433 IPR006918 GO:0010215|GO:0031225
Cla04g01143 894 PANTHER COBRA-LIKE PROTEIN 7 433 - -
Cla04g01143 894 Pfam COBRA-like protein 49 212 IPR006918 GO:0010215|GO:0031225
Cla04g01143 894 Pfam WD domain, G-beta repeat 714 744 IPR001680 GO:0005515
Cla04g01143 894 Pfam WD domain, G-beta repeat 619 654 IPR001680 GO:0005515
Cla04g01143 894 Pfam WD domain, G-beta repeat 563 597 IPR001680 GO:0005515
Cla04g01143 894 Pfam WD domain, G-beta repeat 749 788 IPR001680 GO:0005515
Cla04g01143 894 ProSitePatterns Trp-Asp (WD) repeats signature. 775 789 IPR019775 -
Cla04g01143 894 ProSiteProfiles Trp-Asp (WD) repeats profile. 764 797 IPR001680 GO:0005515
Cla04g01143 894 Gene3D - 547 893 IPR015943 GO:0005515
Cla04g01143 894 ProSiteProfiles Trp-Asp (WD) repeats profile. 566 607 IPR001680 GO:0005515
Cla04g01143 894 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 622 656 - -
Cla04g01143 894 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 712 744 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla04g01143 Cla06g01531 CCT
Cla04g01143 Cla06g01531 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01143 Cla-Chr4:26624996 Cla07g01519 Cla-Chr7:32372088 0 dispersed
Cla04g01143 Cla-Chr4:26624996 Cla06g01530 Cla-Chr6:28863541 0 wgd
Cla04g01143 Cla-Chr4:26624996 Cla07g01518 Cla-Chr7:32368428 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01143 K14406 - csv:101203708 825.854