Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01146 ATGTTTCGCCTATTCAACAGTTTTGCAACGATGAGAGGCATGGGAAGCCAGAGAGTTCCGCTGCTTGATCGTGGGGGAGGGGGAAAGAGCAATGGCACATCAGAAGATCGTCAGTTGACAGACCTGGAACATGGGGATGCTGTACCGCCTGCAAATGTTGGATTTGGCAGAGTACTTTCACTTGCAAAGCCTGAAGTGGGGAAGTTGATAATTGCTACCTTTGCTCTTCTGATTGCTTCCACGACAAGTATATTGATCCCAAAATTTGGTGGAAAGATTATTGACATTGTATCTGGAGATATTGACACACCAGAACAGAAAAGCGAAGCTCTCAAGGAAGTCACAAACACCATTGTATACATCACATCGATTGTCTTAGTTGGTTCGGTGTGCTCAGCTATTCGAGCTTGGTTATTTTCTTCTGCTAGTGAGAGAGTTGTTGCTCGCCTAAGGAAGAATCTGTTTACTCATCTTCTTAATCAGGAAATAGCCTTCTTTGACGTTACTCGAACAGGGGAGCTTCTTAGTAGGCTATCTGAGGATACCCAAATCATTAAGAATGCTGCAACTACCAATCTTTCCGAGGCCTTAAGAAATCTATCAACTGCAATAATTGGGTTGACCTTCATGTTTTCAACTTCTTGGAAGTTAACATTATTGGCTTTGGTTGTTGTCCCTGTTATTTCTGTTGCTGTTCGTAAATTTGGTCGATTTCTTCGTGAGCTTTCTCACAAGACTCAAGCAGCAGCTGCTGTCTGTGCTTCAATTGCTGAGGAATCTTTTGGTGCCGTGCGCACTGTCAGATCTTTTGCTCAAGAATCCCATGAGATATCACGGTACTCTCAGAAAGTCGAGGAGACATTGCAACTTGGACTTAAACAAGCTAAAGTGGTTGGATTATTCTCTGGAGGTCTTTATGCAGCATCGACCTTATCTGTTATTATCGTCGTGATATATGGAGCTAATCTGACAATCAAAGGGTTCATGAGTCCGGGATCTCTGACATCTTTCATCCTTTATAGTTTGACTGTTGGAACCTCCGTATCTGGGTTGTCAGGATTGTACACTGTAGCCATGAAAGCTGCTGGAGCTAGTAGACGAGTTTTTCAGCTCCTTGATCGTGTATCAACAATGACAAATTCAGGAAACAAGTGCCCTATTGGTGATCAAGATGGAGAAGTTGAGTTGGACGATGTCTGGTTTGCATATCCATCCCGCCCTAATCACACTGTGCTGAAGGGAATAACATTGAGATTGCAGCCTGGCTCTAAAGTAGCTCTAGTTGGTCCAAGTGGCGGCGGAAAAACCACCATAGCAAACCTTATCGAAAGATTTTATGATCCTACTAAAGGACGGATTCTGATAAATGGGGTTCCTCTGGTAGAGATATCACATGAACATTTACACAAAAGGATCAGTATAGTCAGCCAGGAACCTGTTCTTTTCAACTGCTCAATAGAGGAGAACATAGCCTATGGTTTAGATGGCAAAGTCGATAGCGTTGATGTAGAAAATGCAGCTAAAATGGCCAATGCACACGACTTCATATCAAACTTCCCTGAAAAGTATAAAACCCACGTCGGAGAACGCGGGGTAAGGCTGTCAGGCGGTCAGAAACAAAGAGTAGCTATAGCAAGAGCTCTACTTATGAACCCAAGAATTCTCCTTTTGGATGAAGCTACAAGTGCTCTAGATGCTGAAAGTGAACACCTAGTACAGGATGCAATGGATTCTCTGATGAAAGGCAGGACCGTCCTAGTCATTGCTCATCGGCTATCTACCGTCAAGACTGCAGACATTGTGGCCGTCGTCTCTGATGGTCAAATTGTTGAAAGTGGAACACATGAAGAACTTCTTAGCAAGGATGGTGTCTACACTGCACTACTCTTTTCTCGCAAACTTGCATCAAGGCTTTCCAATTCCTATTGTCGCAACGATTGCGCTTCTTTTGCCACACTAGTGAGAACCCAGAACCAAAACCGCCTCTTTGCCTCATTACTCACTCGCCCACTTCAGGATCACTCGCGTTCATGGAGTTCACTTCCAAGTTTTGCGAAGAAAATTCATGGGTTTTTCTCAGTCCCGGCGGCTGGAAAGCGATTCATCTTCAATCCTTCAAATACCCTTTTCAAGGGGTCAATTAAGAGTCTAGTAGAAAGCAGGTCTCTCTTTACGGGAACCCCATTTTCGAAACTGAGATTTCAGTTGAAACCAGGTTTTGATCGTCAATGGGGAGGCAGGCGATCATGGTTTCAAAGACTGACGCATTATGATGTGGTGTTGGGCTTGATTATAGCTAATGTTGCTGTTTTCCTCCTCTGGCGGGTTGCCGATCCTATCTTTATGTCAAAAAACTTTGCTATCTCTATAGAAAATGTTAGAAGCGGCCGCATACATACATTGATTACATCAGCCTTCAGTCACGTAGAAATTGGCCATATAGTATCCAACATGATTGGACTATACTTCTTTGGGATGAATATCGGTAGTGCATTTGGTCCTGAGTTTTTGCTGAAATTGTATCTGGCTGGAGCAGTTGGTGGGTCAGCATTTTACTTGGCGCATCATCTATTTCAAGCATCATCCTCAAAGGGTGCGAGCGGAGCGGTAAATGCTATCATGTTGCTTGATATATTCCTCTTCCCAAAGTCAACCCTCTATCTCCAATTCTTTATACCTGTTCCTGCCATCTTGCTGGGCATTTTTATCATTGGAAAAGACATGTTGAGAATACTAGAGAATGACAGCCAAATTTCAGGATCTGCCCACCTGGGGGGTGCTGCAGTTGCAGCCTTAGCCTGGGCCCGAACGAGAAGATTGATGGTCAGTGAGCCGCCGATTTGCAAATGGGCTGCCCCCGAGAAGAACGACGGCGCTACGTCCAACAAAAGAAGAGAAAGTTTGAGCTGCCATCTAACGACATTCAATGCCGCACTCTTCTTTTTTGTCCTGCCAACAGTTACTTCTCATTCCTTGTTCCTCTGCCATCGATCCCATGTTCGATCTGTTAATGTGGGATTTCTGCAAAAATATCTGGAAAGATTGGTCATGGATATTTCAGAATGCGATACAGGCGAAGGGTTGGAGCATAAAATGAAAAAGAGAAAGCAAGAACAGTTTGATAATGCTCCTGAAGGAAACATGGGTAGTGTTCTTTCTGGTTCTGAAGACGCATTTTCAATGGATAAAATCCTGTCTGAAAATGATCCAGGTCCAGATGCCACGTTTATTATGTGCTCAACGTTGGAATCTGAAACAGGAAAAACTCTTCCCGATATATGTAGTTCAAAAGGAAATGTTCATGAAAAGGAGCATAATGATGACCAAAAATTGTCAAAAGATATGGATACAGAGCATGAAAATATCAATGGTTCTGATAATCTTATCCCAGATGGGGAAGATGTAAAACAAAATGTTGCTAGATATAGTGTTGAAATGGAAGAGTCAAGTTCAACGAACGCTTACAAAGAAGATTCTGGGATCTCTGAAGATCCAGGTGGTAATGGTATGAGAGACCATGACTGCCATGGAAACCTTGACAATGTTGCCCAAGAACTGAACAAGGAGATGATAGATGTGAGGAAGGATGATCATTCTAGAGAAAAATTCTCTGACCCTGGGTCTCATTTTCCATGTAATGAGCAGGAATACGAGGGGGATGGTTCATTGAAAAGTTTGGATGTAGAACAGATAAATGATGCATTTGGTAATAATGCTTTAGAGAAGATTGTGGAAGGTGGCGTGGAGGAAATTTCTGTTTGTTGTTCAGTCAGTGAGCATGATGATGAAACTTCAACAAGCAAGGAATTGATTATGTCAACTCCTTCCTGCATGCCTCCTGAACTGGAAAATGCTGAAACTGCGAAGGAAGAAGTTGTATGTTTCTCAGCTTCTGGTGAGACAAGCAGTGGTGTTGATGCTATCGCTGAAGAGAAAACTCCGTCACTGGTATTGGATACTACAGAGAAAGGAGATTCTCTTGGTTTTTCAAGGAAAAAGCTTCTTGTTCTCGATGTAAATGGACTGCTTGCAGATTTTATTATTTACGTTCCACCTGGATATAAGCCAGACATTGTAATAGGACAAAAAGCAGTGTTCAAGAGGCCATTTTGTGATGATTTTATTAAGTTTTGTTTTGAAAGATTCGAGGTGGGTGTTTGGTCGTCAAGAACTCGGAGAAATGTGGACGTGGTAATAGATTTTCTAATGGGAGACTTCAGACAAAAATTACTATTTTGCTGGGATCAATCACACTGTACCGACACCACGTTCTCTACCGTAGAGAACAAGCACAAGCCTTTAGTCTTAAAGGAAATAAAAAAACTGTGGAAATACCTTAAGCCACGAGAGTTCAATGCATCAAACACCCTGCTGCTGGATGATTCCCCACACAAGGCATTGTGCAATCCGGCAAACACTGCAATATTTCCTGTAACATATCGGTTTAGGGATACTGACGATACGTCGTTAGGACCGGGAGGCGATCTTCGGGTTTTTCTGGAAGGTTTATCGATGGCAGAAAACGTTCAAAACTACGTTGAGCAGAATCGTTTTGGTCAACGTCCCATTACAGAAAAGAACCCGTCTTGGAAGTTTTATAGGCGGATCATATATTTTGTTGAGCGCAAAAACGATCAGGAGGATACAAATTCTTTCAAATGGAACTGA 4668 42.72 MFRLFNSFATMRGMGSQRVPLLDRGGGGKSNGTSEDRQLTDLEHGDAVPPANVGFGRVLSLAKPEVGKLIIATFALLIASTTSILIPKFGGKIIDIVSGDIDTPEQKSEALKEVTNTIVYITSIVLVGSVCSAIRAWLFSSASERVVARLRKNLFTHLLNQEIAFFDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAIIGLTFMFSTSWKLTLLALVVVPVISVAVRKFGRFLRELSHKTQAAAAVCASIAEESFGAVRTVRSFAQESHEISRYSQKVEETLQLGLKQAKVVGLFSGGLYAASTLSVIIVVIYGANLTIKGFMSPGSLTSFILYSLTVGTSVSGLSGLYTVAMKAAGASRRVFQLLDRVSTMTNSGNKCPIGDQDGEVELDDVWFAYPSRPNHTVLKGITLRLQPGSKVALVGPSGGGKTTIANLIERFYDPTKGRILINGVPLVEISHEHLHKRISIVSQEPVLFNCSIEENIAYGLDGKVDSVDVENAAKMANAHDFISNFPEKYKTHVGERGVRLSGGQKQRVAIARALLMNPRILLLDEATSALDAESEHLVQDAMDSLMKGRTVLVIAHRLSTVKTADIVAVVSDGQIVESGTHEELLSKDGVYTALLFSRKLASRLSNSYCRNDCASFATLVRTQNQNRLFASLLTRPLQDHSRSWSSLPSFAKKIHGFFSVPAAGKRFIFNPSNTLFKGSIKSLVESRSLFTGTPFSKLRFQLKPGFDRQWGGRRSWFQRLTHYDVVLGLIIANVAVFLLWRVADPIFMSKNFAISIENVRSGRIHTLITSAFSHVEIGHIVSNMIGLYFFGMNIGSAFGPEFLLKLYLAGAVGGSAFYLAHHLFQASSSKGASGAVNAIMLLDIFLFPKSTLYLQFFIPVPAILLGIFIIGKDMLRILENDSQISGSAHLGGAAVAALAWARTRRLMVSEPPICKWAAPEKNDGATSNKRRESLSCHLTTFNAALFFFVLPTVTSHSLFLCHRSHVRSVNVGFLQKYLERLVMDISECDTGEGLEHKMKKRKQEQFDNAPEGNMGSVLSGSEDAFSMDKILSENDPGPDATFIMCSTLESETGKTLPDICSSKGNVHEKEHNDDQKLSKDMDTEHENINGSDNLIPDGEDVKQNVARYSVEMEESSSTNAYKEDSGISEDPGGNGMRDHDCHGNLDNVAQELNKEMIDVRKDDHSREKFSDPGSHFPCNEQEYEGDGSLKSLDVEQINDAFGNNALEKIVEGGVEEISVCCSVSEHDDETSTSKELIMSTPSCMPPELENAETAKEEVVCFSASGETSSGVDAIAEEKTPSLVLDTTEKGDSLGFSRKKLLVLDVNGLLADFIIYVPPGYKPDIVIGQKAVFKRPFCDDFIKFCFERFEVGVWSSRTRRNVDVVIDFLMGDFRQKLLFCWDQSHCTDTTFSTVENKHKPLVLKEIKKLWKYLKPREFNASNTLLLDDSPHKALCNPANTAIFPVTYRFRDTDDTSLGPGGDLRVFLEGLSMAENVQNYVEQNRFGQRPITEKNPSWKFYRRIIYFVERKNDQEDTNSFKWN 1555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26663833 26685366 + ClCG04G011670.2 Cla04g01146 271374

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01146 1555 Pfam ABC transporter 412 562 IPR003439 GO:0005524
Cla04g01146 1555 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 394 631 IPR003439 GO:0005524
Cla04g01146 1555 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 385 629 IPR027417 -
Cla04g01146 1555 PANTHER ABC TRANSPORTER B FAMILY MEMBER 25 11 633 - -
Cla04g01146 1555 Gene3D ABC transporter type 1, transmembrane domain 119 391 IPR036640 GO:0005524|GO:0016021
Cla04g01146 1555 SUPERFAMILY HAD-like 1329 1491 IPR036412 -
Cla04g01146 1555 CDD ABC_6TM_AtABCB27_like 72 368 - -
Cla04g01146 1555 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 70 360 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cla04g01146 1555 Pfam ABC transporter transmembrane region 69 346 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cla04g01146 1555 ProSitePatterns ABC transporters family signature. 534 548 IPR017871 GO:0005524
Cla04g01146 1555 Gene3D - 392 637 IPR027417 -
Cla04g01146 1555 Pfam NLI interacting factor-like phosphatase 1333 1510 IPR004274 -
Cla04g01146 1555 SMART AAA_5 421 615 IPR003593 -
Cla04g01146 1555 ProSiteProfiles FCP1 homology domain profile. 1328 1503 IPR004274 -
Cla04g01146 1555 MobiDBLite consensus disorder prediction 1097 1121 - -
Cla04g01146 1555 Gene3D - 756 936 IPR035952 -
Cla04g01146 1555 SMART forpap2 1331 1488 IPR004274 -
Cla04g01146 1555 CDD ABC_MTABC3_MDL1_MDL2 394 628 - -
Cla04g01146 1555 MobiDBLite consensus disorder prediction 19 45 - -
Cla04g01146 1555 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 11 633 IPR039421 -
Cla04g01146 1555 SUPERFAMILY Rhomboid-like 755 935 IPR035952 -
Cla04g01146 1555 Gene3D - 1288 1520 IPR023214 -
Cla04g01146 1555 MobiDBLite consensus disorder prediction 1095 1134 - -
Cla04g01146 1555 Pfam Rhomboid family 794 935 IPR022764 GO:0004252|GO:0016021
Cla04g01146 1555 SUPERFAMILY ABC transporter transmembrane region 57 373 IPR036640 GO:0005524|GO:0016021
Cla04g01146 1555 MobiDBLite consensus disorder prediction 1146 1176 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01146 - - - csv:101206026 1137.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01146 Cla-Chr4:26663833 Cla11g01294 Cla-Chr11:26495738 3.77E-93 dispersed
Cla07g01576 Cla-Chr7:32970048 Cla04g01146 Cla-Chr4:26663833 6.85E-84 dispersed
Cla01g00181 Cla-Chr1:1813059 Cla04g01146 Cla-Chr4:26663833 4.27E-12 transposed
Cla01g00527 Cla-Chr1:5757865 Cla04g01146 Cla-Chr4:26663833 2.33E-06 transposed
Cla02g00035 Cla-Chr2:408591 Cla04g01146 Cla-Chr4:26663833 8.99E-14 transposed
Cla03g01043 Cla-Chr3:20034197 Cla04g01146 Cla-Chr4:26663833 1.09E-20 transposed
Cla04g00957 Cla-Chr4:24655246 Cla04g01146 Cla-Chr4:26663833 2.68E-58 transposed
Cla05g02582 Cla-Chr5:37047726 Cla04g01146 Cla-Chr4:26663833 6.16E-104 transposed
Cla09g01881 Cla-Chr9:36512565 Cla04g01146 Cla-Chr4:26663833 4.55E-79 transposed
Cla10g00838 Cla-Chr10:19234100 Cla04g01146 Cla-Chr4:26663833 1.61E-14 transposed
Cla10g01794 Cla-Chr10:33864523 Cla04g01146 Cla-Chr4:26663833 5.75E-46 transposed
Cla04g01146 Cla-Chr4:26663833 Cla06g01533 Cla-Chr6:28888423 4.27E-96 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g453 . . . . . . . . Cmo13g01111 . . . . . . Cpe20g00083 . . . . . . . . . . . . . . . . Cone16ag0216 . . Lsi02g00129 Csa01g00612 Chy12g01488 Cme12g01929 . . Bda11g01765 . . . . . Sed08g2128 . . Cma13g01067 . Car13g00902 . . . Bhi08g01072 Tan05g2345 Cmetu12g1181 Lac10g0175 Hepe07g2452 . . Cla04g01146 Cam04g1200 Cec01g1712 Cco01g1756 Clacu04g1227 Cmu04g1207 Cre01g1504 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008898 2 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 2 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla04g01146 Cla_Chr04 FPKM 8.086 8.535993 564.226379 524.966125 14.150426 11.674866 12.337172 2997.167725 3474.027344 2941.976318