Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01158 ATGGCTGCTCTGGCTCTATCATTGCTCCTTCTGGCCGCCATGGGTGGCCACTCCAGTGGGACATGGTGCGTTTGCAAGGATGGAGTGAGCGACGCGACGCTACAGAAGGCGCTTGACTACGCGTGCGGGGCAGGAGCTGACTGCAGCCCCATTCGACAAAATGCAGCTTGTTTCCTTCCAAATACAGTCAGAGCTCACTGTTCTTATGCTGTTAATAGCTATTTCCAAAAGAAAGGCCAAACTCAAGGCTCTTGTGACTTTGCTGGTGCTGCTGGCTGTTCCTACCCTTCAAGCGCCGGTGGCGGGGGTGGCGGCGGCAACGGAGGCGGAGTAACTCCGGTGACGATGACTCCAACACCACCTGGAGCGACAACAGTCCCTGGGATGACGTCACCTGTCACGAGGCCACCACCATCGACTACAACAACCCCCGCGACTACAAATAATCCTCTTCCCAACACTGCATCTCCCACCGGAGTTTTAGGCGGCGCCGGCACCGGCACCGGCGTCAGCCCCACTGGAGCTGGCACCACTACCGACGAGAGCCACGGCGGCTTCCGACTCCAACGTCACATATTCTTCTCCCTCTCGACTTTTTCATCTTCGGTCAGTTGTTTTTCAAAGGCTTTTCTTATTCTTCCTCCCAATGCTCATTCTCCAGCAAACCATTCATGCCGCCAGCGAGCCATTAATGCTTCAACTCTGCTCGTCCATCTACACAGACAACGTGCATTGAATGTGCAGGGAAGGCGGGCGATAACTTATTGCGGTGCTGAATGCGGGTTTCCGTATCGGTTAATGGCGGATCAGTTCTGTTACATTTGTGGGGATGTTGGTTATGCTGAGCTGATTGTAACCTGCTCTAAGTGCAAAGTAGTTCGTGAACATCTTTATTGCATGCCCAATAAAAGTCACGATGTCCCCAAATCCTGGCTTTGTGGTAATTGTACATTGGATGAGGCCAAAAGTCCTGATGGTTCAGGGTTGCAGGTTCAACCTAAAATGCCAAGACATGCTAAAACTGGTAAAGTGAAATTCTTACCTACCGAAGAAGTAATTAAGCTATCATCAGGAGGGATGAAGGGACCTTCAAAGTTGGACACAACTTTTGCACTGCATAAAGCATCCAAGTCCAGAAAAGTCTTTGAAAGCTCTATGGCCCGGCCACTTTTCCAAGCATCAAAAGAATCTCAAGAACAAACTTCTGCTATGATGCCTCCAAAGATATGTGGCATGAAGAAACAAGCATTAGCTACTTGTTCACCTCCAATGCTAGTAGGCCCAGTACAAACTTTTAAAAAGGTGAAGGCTACAGATACACTTGCTTGCACTTCTTCTGTGTCAAGGCATGGTTTACCTGTCACAAATACTGCCAATGTTAATGAAAACACAGGAAAAGAAGTTCCTTCACCTTCCACTAAGTTGGAGGATACACAAAAACAAAGGAAGGATGCTTCATTTACACATGAAATACATGCTTACCGTGACAACAGAGGAAAAGAAGTCCCTTCACCTTCCAGTAAGTTGGAGGATACGCAAAAACAAAGGAAGGATGCTTCACTTACTCATGGAAAACATGCATACCGTGACAACCGAAGAAAAGAAGTTCCTTCACCTTCCACTAAGTTGGTGGATACACAAAAAGGAAGGAATGATGATTCGTTTATGCATGAAATACATGCAGACCGTGACAGCACAGAAAAAGAAGTTCCTTCACCTTCCACTAAGTTTGAGGATACACAAAAACAAAGGAAGGATGCTTCATTTACACATGAAATACACGCATACCGTGGCAACAGAGGAAAACAAGTTCCTTCACCTCCCACTAAGGGATGCTTCCAATTTATTGATACACGTATGGTGGGTGAATTTTATGATGGTATCCTCGCAAAGCCTCCATGTGTGGTATGTGGTAGAGTTTATGAATTGACGCGGAAGAATCCTCCCATTCTTCAAGTGAAGCTGCTTAGGCGTTCTGATATTTGGGATGATCTATTTCATGATGAATGTCCGGATCTTGCTGACATTGCCTTGTACTTCTACCTGGGCAATAATGAAAGGTCCAGAAAGAACAACTCTTGCCTGTTTGAACTTATGGAGAGAGAAGATTTATTGATAAGAAGTCTTATTGACGATGTTGTTAACATGTTAAATGCCGAATACCTCCTTTTCGGAGTCTTTCGTGAAATAGAAGACGACCAGTCTCCTTTTCCTATGTTAGAATATGGTCCTGCAGTTTCTTCAGTAGAATGTGATTCCAGAGTTACCCTGCTGGAATTCACGCCCAACGGATATGGAAAGCAAGATGAAGACAATGCTGTTAAAAGGGAAATTGACATCAAGGGCGGAAACACTGCTGGAAAGTCTCCAACTGCAAACGATGTAGACTCTACCATTCAGCGATTACTATTAGAATTTGGGTCACAAGAACCCAGGGAGTCCAATGTCAATGCATTAAATATGAATGCTCAAACAAAAGATCAGGAACCTGCTCCAATCGCAGCGACCAACTCCTATTCTCGTTCCCTGTCAAAAGTAAAGACTGAACCTTCAGTTATTAAAGCGGAAGGAAGTGATGGAAACAAATGCTTGCAAATGGAGCATTGCTCGAGAATGGTGCCAACATCATTTAGTATTGATGGCTCTAAAAACATGAGTGGTTTAACTGAACAAGATGCTCCGAAGAGAGTTGCAGAAAAGTATCTCCAAATCTTTAATGCAGGGATTAAAAAGGAACGTCGGTAG 2745 45.43 MAALALSLLLLAAMGGHSSGTWCVCKDGVSDATLQKALDYACGAGADCSPIRQNAACFLPNTVRAHCSYAVNSYFQKKGQTQGSCDFAGAAGCSYPSSAGGGGGGGNGGGVTPVTMTPTPPGATTVPGMTSPVTRPPPSTTTTPATTNNPLPNTASPTGVLGGAGTGTGVSPTGAGTTTDESHGGFRLQRHIFFSLSTFSSSVSCFSKAFLILPPNAHSPANHSCRQRAINASTLLVHLHRQRALNVQGRRAITYCGAECGFPYRLMADQFCYICGDVGYAELIVTCSKCKVVREHLYCMPNKSHDVPKSWLCGNCTLDEAKSPDGSGLQVQPKMPRHAKTGKVKFLPTEEVIKLSSGGMKGPSKLDTTFALHKASKSRKVFESSMARPLFQASKESQEQTSAMMPPKICGMKKQALATCSPPMLVGPVQTFKKVKATDTLACTSSVSRHGLPVTNTANVNENTGKEVPSPSTKLEDTQKQRKDASFTHEIHAYRDNRGKEVPSPSSKLEDTQKQRKDASLTHGKHAYRDNRRKEVPSPSTKLVDTQKGRNDDSFMHEIHADRDSTEKEVPSPSTKFEDTQKQRKDASFTHEIHAYRGNRGKQVPSPPTKGCFQFIDTRMVGEFYDGILAKPPCVVCGRVYELTRKNPPILQVKLLRRSDIWDDLFHDECPDLADIALYFYLGNNERSRKNNSCLFELMEREDLLIRSLIDDVVNMLNAEYLLFGVFREIEDDQSPFPMLEYGPAVSSVECDSRVTLLEFTPNGYGKQDEDNAVKREIDIKGGNTAGKSPTANDVDSTIQRLLLEFGSQEPRESNVNALNMNAQTKDQEPAPIAATNSYSRSLSKVKTEPSVIKAEGSDGNKCLQMEHCSRMVPTSFSIDGSKNMSGLTEQDAPKRVAEKYLQIFNAGIKKERR 914
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26767050 26785366 - ClCG04G011830.1 Cla04g01158 271386

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01158 914 MobiDBLite consensus disorder prediction 140 161 - -
Cla04g01158 914 SMART X8_cls 21 95 IPR012946 -
Cla04g01158 914 MobiDBLite consensus disorder prediction 825 847 - -
Cla04g01158 914 Gene3D - 17 100 - -
Cla04g01158 914 MobiDBLite consensus disorder prediction 119 182 - -
Cla04g01158 914 MobiDBLite consensus disorder prediction 825 857 - -
Cla04g01158 914 Pfam X8 domain 21 91 IPR012946 -
Cla04g01158 914 MobiDBLite consensus disorder prediction 476 539 - -
Cla04g01158 914 PANTHER PLASMODESMATA CALLOSE-BINDING PROTEIN 3 1 199 - -
Cla04g01158 914 PANTHER BETA-1,3 GLUCANASE 1 199 IPR044788 -
Cla04g01158 914 MobiDBLite consensus disorder prediction 450 586 - -
Cla04g01158 914 MobiDBLite consensus disorder prediction 546 586 - -
Cla04g01158 914 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 339 IPR013083 -
Cla04g01158 914 MobiDBLite consensus disorder prediction 450 475 - -
Cla04g01158 914 SUPERFAMILY FYVE/PHD zinc finger 269 320 IPR011011 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01158 - - - csv:101223019 830.476
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla04g01158 Cla06g01545 CCT
Cla04g01158 Cla06g01545 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01158 Cla-Chr4:26767050 Cla08g01041 Cla-Chr8:23098580 8.98E-38 dispersed
Cla09g00923 Cla-Chr9:9607706 Cla04g01158 Cla-Chr4:26767050 4.12E-07 transposed
Cla09g01695 Cla-Chr9:33935320 Cla04g01158 Cla-Chr4:26767050 2.00E-06 transposed
Cla04g01158 Cla-Chr4:26767050 Cla05g02394 Cla-Chr5:35488716 2.42E-34 wgd
Cla04g01158 Cla-Chr4:26767050 Cla06g01545 Cla-Chr6:29028344 1.06E-43 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g649 . Blo16g00170 Bda06g00526 . . Bpe13g00310 . Bma12g00970 . . . . . Car11g00180 Sed12g1997 . Cpe04g01466 Bhi02g00692 Tan09g2050 Cmetu02g1984 . . . . Cla06g01545 Cam06g1705 Cec06g1766 Cco06g1766 Clacu06g1672 Cmu06g1618 Cre06g2431 Cone2ag0806 Cone16ag0202 Cone13ag0038 . Lsi02g00116 Csa01g00594 Chy12g01504 Cme12g01948 . . Bda11g01721 Bda14g00876 Bpe07g00760 . Bma03g00848 . . . Cmo11g00205 . . . Car18g00006 . Cpe18g00701 Bhi08g01093 . . Lac10g0143 . . . Cla04g01158 Cam04g1217 Cec01g1728 Cco01g1773 Clacu04g1244 Cmu04g1223 Cre01g1519 Lsi06g01420 Csa01g00286 Chy02g02449 Cme02g01836
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012737 1 4 0 1 0 1 1 1 1 1 1 1 0 1 1 0 1 2 1 1 1 1 1 1 1 0 1 1 1 0 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla04g01158 Cla_Chr04 FPKM 29.183384 31.955332 79.430786 79.625404 40.263855 38.666225 41.693359 52.314865 48.358234 56.189728