Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01163 ATGAATCCTGATAAATTCACCCACAAGACTAATGAGGCACTCGCCGGAGCTCATGAATTGGCATTGAATTCCGGCCATGCTCAATTGACACCGCTTCATTTGGCGGTTGCTTTGATTTCTGATCCGAGTGGGATTTTGAGCCAAGCGATTGCTAGTTCCGGCGGTGACAATGCCCATCAAGAAGTGGAGACGGTTTTCAAGCGGGCATTGAAGAAGCTCCCATCTCAATCCCCTGCTCCCGATGAAGTGCCGGCGAGTACGACTCTGATTAAGGTGATTCGAAGAGCACAAGCTGCGCAAAAATCGCGAGGGGACACGCATTTAGCTGTCGATCAATTAGTTCTTGGCCTTCTTGAGGATTCTCAGATTGGGGATCTGCTTAAAGAAGCTGGTGTCACCACCGCGAAAGTTAAGTCTGAGGTCGAGAAACTCCGTGGAAAAGAAGGGAAGAAAGTGGAGAGTGCATCTGGAGACACAACTTTTCAGGCACTCAAAACTTATGGGCGAGACCTGGTAGAACAAGCTGGGAAACTCGACCCAGTTATTGGCCGTGATGAAGAAATTCGTAGAGTGGTGAGGATTTTATCGAGAAGGACTAAGAACAACCCAGTTCTTATTGGGGAGCCTGGAGTTGGTAAAACTGCAGTGGTTGAAGGATTAGCCCAGAGAATTGTAAGGGGAGATGTCCCAAGTAATCTTGCTGATGTGAGGCTCATAGCTTTGGACATGGGTGCTCTGGTTGCAGGGGCTAAGTACAGGGGAGAATTTGAAGAGAGATTGAAGGCGGTATTGAAGGAGGTTGAAGATGCAGAAGGGAAAGTCATATTGTTTATAGATGAGATCCATCTTGTTCTTGGTGCTGGAAGGACAGAAGGGTCTATGGATGCTGCCAATCTTTTCAAGCCTATGCTGGCAAGAGGGCAGCTACGTTGCATTGGGGCAACTACTCTTGAAGAGTACAGGAAGTATGTAGAGAAGGATGCAGCATTTGAGAGGAGGTTTCAACAAGTTTATGTGGCTGAACCGAGTGTGCCTGACACTATCAGCATCCTTCGAGGATTGAAAGAGAGATATGAAGGTCATCATGGTGTTAGGATACAAGATAGAGCTCTCGTGGTTGCAGCGCAGCTTTCGAGTCGGTATATCAGCGGGCGTCACCTTCCTGATAAGGCAATTGATTTAGTTGATGAAGCTTGTGCTAATGTGAGGGTCCAGCTTGATAGTCAGCCTGAAGAAATTGACAACTTGGAGAGGAAACGAATGCAGCTGGAAGTCGAACTCCATGCTCTTGAAAAGGAGAAGGATAAAGCTAGTAAAGCTCGTCTTGTTGAAGTGAGGAGAGAGCTTGATGATTTGAGAGATAAGCTTCAACCTTTGTTGATGAAATATCGTAAGGAGAAAGAAAGGATTGATGAGATTAGAAGACTTAAGCAAAGGAGAGAGGAACTACAAATAGCTTTGCAAGAGGCTGAAAGGAGATATGATTTGGCAAGGGCCGCTGATTTGAGATATGGAGCAATCCAAGAGGTAGAATCTGCAATAGCACGGATTGAAGGGAACACTGATGAGAATCTAATGTTGACCGAAACTGTTGGACCGGAACAAGTAGCAGAAGTGGTGAGCCGCTGGACAGGAATACCTGTCACGAGGCTCGGCCAGAATGACAAAGAGAGACTAGTCGGACTTGCTGATAGATTGCACAAGAGAGTTGTGGGGCAGAATCAAGCTGTGGATGCTGTTGCCGAGGCTGTTTTGCGATCAAGAGCTGGCTTGGGGAGGCCACAACAACCAACAGGATCTTTCCTGTTTCTGGGTCCAACTGGTGTCGGCAAAACCGAGCTTGCAAAGGCACTCGCCGAGCAACTTTTCGATGATGAAAACCTCCTGGTGAGGATTGACATGTCTGAATATATGGAACAACACTCAGTTTCACGCCTCATTGGTGCTCCTCCCGGGTATGTTGGGCATGAAGAAGGAGGCCAACTCACAGAGGCAGTAAGGCGGAGGCCTTACAGTGTTGTTCTGTTTGATGAAGTGGAGAAAGCTCACATCTCTGTCTTCAACACTCTTCTCCAAGTTTTAGACGATGGAAGACTAACCGATGGTCAAGGCCGGACTGTAGATTTCAGAAACACAGTCATTATCATGACTTCTAATCTCGGAGCTGAACATCTCCTTTCTGGGCTTATGGGCAAGTGCACAATGCAAGTTGCTCGTGATCGAGTCATGCAAGAGGTGCGGAAACACTTTAGGCCAGAGCTGCTTAATCGTCTGGACGAAATTGTTATATTCGATCCCCTTTCACACGACCAACTGAGGAAAGTTGCTAGGCTGCAAATGAAAGATGTTGCAGCCCGGCTGGCCGAGAGAGGTGTTGCCTTGGCCGTGACCGATGCTGCTCTTGATTACGTCTTAGCAGAGAGCTATGATCCAGTCTATGGTGCGAGACCCATAAGAAGATGGCTGGAGAAGAGGGTGGTGACGGAACTCTCCAGAATGTTGATCAAAGAAGAAATCGATGAGAATTCAACTGTGTACATTGATGCTGGGGCTGATGGGGATAGGTTGGCGTACAGAGTGGAGAAGAACGGTGGTTTTGTTGATGCAGCGACTGGGAAAAAGTCTGATGTTTTGATTCAAATCAACAATGTCCCAAGAAGCGATGCTGCTCAGACTGTGAAGAAGATGAAGATTGAAGAAATTGATGATGATGAAATGGAAGAGTGA 2727 47.12 MNPDKFTHKTNEALAGAHELALNSGHAQLTPLHLAVALISDPSGILSQAIASSGGDNAHQEVETVFKRALKKLPSQSPAPDEVPASTTLIKVIRRAQAAQKSRGDTHLAVDQLVLGLLEDSQIGDLLKEAGVTTAKVKSEVEKLRGKEGKKVESASGDTTFQALKTYGRDLVEQAGKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEDAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTISILRGLKERYEGHHGVRIQDRALVVAAQLSSRYISGRHLPDKAIDLVDEACANVRVQLDSQPEEIDNLERKRMQLEVELHALEKEKDKASKARLVEVRRELDDLRDKLQPLLMKYRKEKERIDEIRRLKQRREELQIALQEAERRYDLARAADLRYGAIQEVESAIARIEGNTDENLMLTETVGPEQVAEVVSRWTGIPVTRLGQNDKERLVGLADRLHKRVVGQNQAVDAVAEAVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGLMGKCTMQVARDRVMQEVRKHFRPELLNRLDEIVIFDPLSHDQLRKVARLQMKDVAARLAERGVALAVTDAALDYVLAESYDPVYGARPIRRWLEKRVVTELSRMLIKEEIDENSTVYIDAGADGDRLAYRVEKNGGFVDAATGKKSDVLIQINNVPRSDAAQTVKKMKIEEIDDDEMEE 908
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26843030 26846741 - ClCG04G011880.1 Cla04g01163 271391

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01163 908 Pfam AAA domain (Cdc48 subfamily) 597 761 IPR003959 GO:0005524|GO:0016887
Cla04g01163 908 Gene3D - 150 343 IPR027417 -
Cla04g01163 908 Pfam Clp amino terminal domain, pathogenicity island component 96 146 IPR004176 -
Cla04g01163 908 Pfam Clp amino terminal domain, pathogenicity island component 17 61 IPR004176 -
Cla04g01163 908 ProSitePatterns Chaperonins clpA/B signature 2. 631 649 IPR028299 -
Cla04g01163 908 Pfam AAA lid domain 344 443 IPR041546 -
Cla04g01163 908 PANTHER CHAPERONE PROTEIN CLPB3, CHLOROPLASTIC 4 862 - -
Cla04g01163 908 CDD AAA 182 337 - -
Cla04g01163 908 ProSitePatterns Chaperonins clpA/B signature 1. 295 307 IPR018368 GO:0005524
Cla04g01163 908 SUPERFAMILY Double Clp-N motif 4 157 IPR036628 -
Cla04g01163 908 Coils Coil 406 455 - -
Cla04g01163 908 Pfam ATPase family associated with various cellular activities (AAA) 204 317 IPR003959 GO:0005524|GO:0016887
Cla04g01163 908 Gene3D - 3 148 IPR036628 -
Cla04g01163 908 Gene3D - 550 766 IPR027417 -
Cla04g01163 908 PANTHER ATP-DEPENDENT CLP PROTEASE 4 862 - -
Cla04g01163 908 SMART AAA_5 597 741 IPR003593 -
Cla04g01163 908 SMART AAA_5 199 344 IPR003593 -
Cla04g01163 908 CDD AAA 571 766 - -
Cla04g01163 908 Gene3D - 344 544 IPR027417 -
Cla04g01163 908 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 601 619 IPR001270 GO:0005524
Cla04g01163 908 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 646 664 IPR001270 GO:0005524
Cla04g01163 908 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 675 693 IPR001270 GO:0005524
Cla04g01163 908 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 708 722 IPR001270 GO:0005524
Cla04g01163 908 ProSiteProfiles Clp repeat (R) domain profile. 3 147 IPR004176 -
Cla04g01163 908 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 545 IPR027417 -
Cla04g01163 908 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 546 847 IPR027417 -
Cla04g01163 908 SMART ClpB_D2_small_2 767 858 IPR019489 -
Cla04g01163 908 Pfam C-terminal, D2-small domain, of ClpB protein 767 847 IPR019489 -
Cla04g01163 908 Coils Coil 253 273 - -
Cla04g01163 908 Gene3D - 767 865 - -
Cla04g01163 908 Coils Coil 463 500 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01163 K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB - csv:101221981 1681.77
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla04g01163 Cla06g01547 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01163 Cla-Chr4:26843030 Cla11g01194 Cla-Chr11:25013843 1.58E-09 dispersed
Cla03g00163 Cla-Chr3:1754103 Cla04g01163 Cla-Chr4:26843030 0 transposed
Cla05g01435 Cla-Chr5:20490317 Cla04g01163 Cla-Chr4:26843030 4.92E-07 transposed
Cla05g01491 Cla-Chr5:24067481 Cla04g01163 Cla-Chr4:26843030 0 transposed
Cla05g01689 Cla-Chr5:28604761 Cla04g01163 Cla-Chr4:26843030 0 transposed
Cla06g01783 Cla-Chr6:31246818 Cla04g01163 Cla-Chr4:26843030 0 transposed
Cla09g02119 Cla-Chr9:38786185 Cla04g01163 Cla-Chr4:26843030 1.20E-169 transposed
Cla04g01163 Cla-Chr4:26843030 Cla06g01547 Cla-Chr6:29044164 2.77E-114 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g643 Blo04g00788 . . . Bpe12g00459 . Bma06g00155 . Cmo13g01128 . . . . . . Cpe20g00068 . Bhi02g00694 Tan09g2052 Cmetu02g0330 . . . . Cla06g01547 Cam06g1708 Cec06g1768 Cco06g1769 Clacu06g1675 Cmu06g1621 Cre06g2434 Cone2ag0814 Cone16ag0200 . . Lsi02g00111 Csa01g00590 . Cme12g01952 . . Bda11g01719 Bda14g00871 . Bpe15g00585 Bma03g00847 Bma08g00280 Sed08g2114 . . Cma13g01080 . Car13g00917 . . . Bhi08g01100 Tan05g2372 Cmetu12g0960 Lac10g0140 Hepe07g2473 . . Cla04g01163 Cam04g1221 Cec01g1732 Cco01g1778 Clacu04g1248 Cmu04g1227 Cre01g1523 Lsi06g01422 Csa01g00282 Chy02g02452 Cme02g01838
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002248 4 2 1 2 2 2 4 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla04g01163 Cla_Chr04 FPKM 4.992337 5.656265 6.200292 8.667278 10.609691 10.410029 10.818787 5.890569 8.035858 6.964496