Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01165 ATGCCTGGAAACGAAGTTGGAGACAGGGTCCACAATTTCTTTGGCCAAGAGAATTTGTACCAGGGCCAGCATCAGTCCCAGGCTGCTGATGGAAGCTGGGCTGGTCTGAATAATAACCTATGGGTTAGAAACCAGAGAGAGATTAATTCTCCTTTTATTTCAAATTTGAAGAATTATAATGCACATCAACCAGATTCCGGAGGGCTGGGTCAGCCTTCTCATTCACTTCATGATTTGAACTTCTCCCAATCATATATAAGTCCTGAGATTGGAAGAAGTGAGTCTCAAAATCAACATCAAACTCTGAATGGTTATGCAGCAGGCCAACAACTTTTCCATGCAAGGCAAATTGAAGCAAACTTTTTAGGTGCAGATGCAGTATCTGATAGGCATATAACATCAAGAGGCCTATCTATTCATGAAGCACAACAAGTGAATAATCCTGATCTAAGCAAGAAAAATGTAGCTAGGTTGGAAACTACTGATTCTCCTGTAAATTTTGATTTTTTTGGGGGTCAACAGCAATTGAGTAGCAGAAATCCCAGTGTGACACAGATTTTGCCTAAGCAGCAGCCTGGGAATCCTGACATGCAACTTCTGCAACAACAAGCGATATTGTCACACATACAAGAACTTCAGAGGCAACACCAATATCAGCAGCAGGAAGCAAGACAACATGGTTCGATGAATCAGGTTTCATCCAGCTCAAAGCCAACAGCAGGAAATCATTCAGCCACACTGATTGATGGTATTCCTATTAATGAGTTATCTACCTCTCCTTGGCAGCCTGAGCATATGGGGAGTAATACAAACTCATTGCAGCACAGTTTGTCTACACCAATGCAGGGTCCCTCTAGTGGATTTGTATTTCCTTCTGAGCAGCAACAAGCACTGCGCATGATGGGTTTAATTCCCGAACAAGTTGAGCAATCTTTGTATGGGGTTCCTCTTTCTACTGCGAGTAGTTTTCTAGGTTCAAACTCTCTCATTCCAACAGAAAAACCTGCTATGCAGCAGTTATCTGTTAGTAACAACTCCCTTTCAGGGAGCCATTATACTGCATACCCAGATCAGGTTAGCATGCAGGATGGAATGGTTGTGAGACAGGATTTCCAGGGGAAAAGTATGTTTGGCATGTCTGCTAGTCAAGGTTTAAATGGTGGACTGAATTCTGAAAACTTGCAGCATGTGAATCTCCAACACAGAAATGCATCTATGCAGGAGTTTAGTAGCAGACAAGAGTTTGATGGGCGATCAGAAGTGTCACAGGAGAAGACAATGGCACAGGTTGCTCCATCGCAAAATGTGGCTACGTTAGATCCCACTGAGGAAAAGATTTTGTATGGTTCAGATGACAACTTGTGGGATGCTTTTGGTCGGAGTGACAATATTACAGCAGGTGGTTACAACATGGCTGATGGTAGTGATTTTAATTCTGGATATTCCTTTTTACAGAGTGGAAGTTGGAGTGCTTTGATGCAGTCAGCTGTAGCAGAAACTTCAAGTGGTGATATGGGCGTTCAAGAAGGGTGGGGTGGTGTAAACTTCAATAATAGTGGGCCTCCAAATGGGAATCAGCAGCATTCAGATGCTAATGACAGTGGAAAACTGCAACCGGTTTGGGTTGATAACAACTTGCAGACACTGAATTCTAGACATTCTTCTGTCTCTGCCGAGGCTAATAATAAGCCCAACAATTATATTAACTCGGCCAATGTCCCTGCATTTCAGCAGTCGGGCCATAAATCATTCTTTCATCAAACTGAAGGCTTTCAGAACAGTAGTGCCCAAAGTTCAACTCCTCCATCATTGGAAGGTGAAAGAAAGTGGATAGACCGTAATCTGCAACAGAAGTCACTTGCTGAAGGTCGGAATTTATCTGAAAACGAAGGTAAGACATCAGGTGTGGAAATCAATGCAGATAATTTGTCAGGTTCTTGGCTCCGTCAACAGAATGCCCCCTCCTATAATAGCCAACCAAGTAAGCCTAATGGTTGGAGCCATATTGAACCGATGTTCTCCCATGGGGGTAACAATATGAAAAATCATGAGAATCATAACATGTCACAATCTTCTCATGGTGGAGATCATAAACGATCTATACGTGAAGAGATGGGTTCTTCTGCTACCTTCAAGCAAAACCATGATTCAGTTTCTAACCCAACTGATGAATTGCAGCATGCAAATCATGCGGTAGAGAACTCGCAGGTGTACAATGAAGGTTCTAATTTAATAAATAATGCTGCAGTAGCTAATGCTAGCAGTTTAAGAGATGACCTAGGAAGCAGGCAACAGAATCCAATTAATCGTAACCTTTCCTTTTGGAAAGATGCTAATTCTTCAATGGACTTGAAAGAAAGTGGTTTTGTGACAAAGTACCAGCATAACATCGATAAGGGCTCTCAAATATTGGAATCACCTGGGAACAGTTGCCTAGAAAAGGGTGCGACTGAAATGCATGAGATTGAAAATTCAAATGCTAGTGATACACACACTTCTTCTGGAAGCAAACAGAAAGTAGGAGGTAATACCATTCGGAAGCCATCTGTAACTCCTCGAAGATTCCAGTACCATCCAATGGGGAATTTAGATATGGACGTGGAACCTTCTTTTGGAACAAGCCATGTAACACAACCACAGGCACATGTGCAGCAAAACTCTCATGGATTTAAGGGTAGTGAGCTGAGTAATCTTAGGCCATCCAAATCTGGAACAGAGGGGAATTCAATTGAAGTTGAAAAGAGTGAAATGAGAGCCTTTGGAGATTTACCTTCTAAAAGAATGCTTCCACCTTTTGGATCTCGTTTTTCTTCTTCTTTGGATAAGCTTGCTGGTCATGATCCACGGCATGTGGCATTCCCGTCAAGATTAGGACTATCTAGAAAATACGATAGTTTAGGGGCAAAGATATCGAATCAAAGGGTAGCTATGATTTACCAAATTTTCTGTTCAAAGGAGGTTCCTCTTAATTCTGTCCAAAATATGCTTGAGCTTCTTCACAAAGTGGATCAACCAAGAGAACAAAATAATGCAACACATAGTCCCTCTTACCGAAATCATTCTTCAGAAATGGGTGAAGCAGAAACTTCTGACGGATCAGTTGGTCAAACACCACGAAATCAGTCCTCTGATTCTCAAGTTTTTGGTTTGCAACTGGGTCCCCCTCAACGATTGTCCATGCAAGATGCTGCTTTATCTTCTCATTGTTCCTCGCCCATGGTTATGAATTCAGCCAATTCTACCTCTGAAACAGGAGAACGTGGCCATATGTTGTTGCCTCCTGTAGCCTCTAAACAGAGGGATTTGAGAAATAATATAACTGGACCTTCTGGACATGGTGGCAATAAAATCCCTCATATCAATGCTCAAGGAAACTTGGCTGCAAATTCTCAATCTGCCTTTCCTTATCCTAGAATTCATCTTCAAAATCAGCACCTTGTTGCCAACCACACTGCTAATGTGTTTTCAGACAGAATTGGTATTCATTCAAGAAATTTTGATAACTCTTCTGAGCGAGTTGAAAATAGTCATATGGTGTCGACAGATATTTCCAGAAGTGGTCTCCAAATGAACCTAGTTTCTTCTGCTGACACATCTCAGCAAAACAGTGGTGAAATATCTAATGCACAAAATTCCCCCCAGCTTGCCCAGGAATTGGGTTCTGTGTCTATATCTCAACGTGCTGCGTTCTCAAAAGTCTCACCTAATGAGTGGGCAAATGTCACAACCCAGAAACATTCACTACATGCAGATCCATCAAAAACGGCCTCAGATTTGTTCAAATCTCGTGTGCATATGGAGAATTCGGACAAGAGTTTTTCAGGACAAAAAGAGATGGACAGTCGAGAGAAATTGGAACTAGAGGCTATGGCCCATGGTGAAAATTCCATCAATATGCAAAATATTATTGGGAGAGAAAAGCAAATGCAAGAAAGCCCTGGCAAGCAAGTTTCGGGTGGGAAGAGTGAAATTTCCCTGCAGGCCACAACTGCATCAGGTGGACTGGAATCTGCTGGACATCACTCATTAGGTGCATCTCCATCAAATTCTATGGGTACTCGAGTAAATATTGACATGTCTGGTCATTCTCTGCGTCCAAATATTAGTTCACAGCAGCACTACTCCTTACTGCATCAAATGCAGGCCATGAAAAATGCAGATAATGACCCAACTAACAGGAGTGGGAAGAGATTTAAAGGTCCAGATTGTGGTTTAGATTCTCAGCAAGCTGCTTTGGATGGGGGCCAACTTTTATCGCATGGACACAGTAATGCTGTCAGAGAGTCATCACTTAACCATGCTTCCATTACACATGTGGATGCAGCAGCGGTAAATTTTTCATCAAAGAAGGGGGACGCCTATGTATCTACTGGTGACATTGCATCTTCTGTGAGAAGCGAGCATTCTCAAATCAGTCCTCAAATGGCACCATCTTGGTTTGATCAATATGGAACCTTTAAAAATGGACAAACTTTAACAGTATTTCCTGGATCTAAAAATGCAACCATGAAGCCGCCTTTGGATCAACCTATGATTGTTGAAAAGCCTCCTGATGGTTTCAATGCTCAAAATTCTATGAAGCAAGCAAATGCTTCTGCTGATGGTAGTGAGCAGAACAATGCACGGGAAAGTTCAACACTAATGTCGATAGAACACAGAAATTTCTCTGCAGGTCAACCTTTGCCACTTGATTTCGTTAATCAAAGTTTGGCTGCTGCAAGACCAAAAAAGCGCAAAAGCTCTGCACCAGAACTGTTACCATGGAATGAAGAAATGACACAAAGTTTTAGAAGGCTGCAGGATATAAGCATGGCGGATGTTGACTGGGCTCAAGCAACCAACCGGCTGATTGAGAAGAAAGAAGATGAAGTTGAAATGATTGACGATGGACTGATGATAAAACTGAAGAGGAGGCTTAACTTGACCACACAGCTAGTTCAACAGCTCCTTCGTCCCCCTCCTTTTACAACTCTCTCTTCAGATGCCAGCTTACATTATGAGAGTGTGGCTTATCTTGTTGCGAGGTTTGCATTGGGGGATGCTTGTAATATAGTTTCTTCCACAGGAACTGATAATGCCTTGCATCCAGAAAGCAGAGATCCCCTTCCTGAGAGACCTAAGGTATCGGAGAAAACTGGTGATCATAAAATTATAGAAATTGTGGAGGAGTTCACGAAACGGGGACAGAAGATGGAAGATGATTTATTGAGAGTGGAGAAGAGAGCTTCAATCCTAGATTTGAGAGTTGAATGCCAGGATCTTGAAAAGTTCTCTGTTATCAATCGGTTTGCCAAGTTCCATAGCCGAGGACAAGTGGATGGGGGTGAGGCCTCATCATCCTCTGATTTAACCGCAAGTTCTCAGAAATCTTGCCCCCAGAGATATGTTACTGCACTTCCCATTCCTAGAAATCTTCCTGACAGGTGTGGAATTAATCCGGGAACGCTGAGTCACCACGGAATTCACACGAGGGAAGAATTGTGTGGATTGTCTGTCAATATTTCCTTCGAAGTGTGGTGGGGGTTTACATCCGTGATATTGAGATGTGAAATAGGGAGTTACCACCTATAA 5571 42.36 MPGNEVGDRVHNFFGQENLYQGQHQSQAADGSWAGLNNNLWVRNQREINSPFISNLKNYNAHQPDSGGLGQPSHSLHDLNFSQSYISPEIGRSESQNQHQTLNGYAAGQQLFHARQIEANFLGADAVSDRHITSRGLSIHEAQQVNNPDLSKKNVARLETTDSPVNFDFFGGQQQLSSRNPSVTQILPKQQPGNPDMQLLQQQAILSHIQELQRQHQYQQQEARQHGSMNQVSSSSKPTAGNHSATLIDGIPINELSTSPWQPEHMGSNTNSLQHSLSTPMQGPSSGFVFPSEQQQALRMMGLIPEQVEQSLYGVPLSTASSFLGSNSLIPTEKPAMQQLSVSNNSLSGSHYTAYPDQVSMQDGMVVRQDFQGKSMFGMSASQGLNGGLNSENLQHVNLQHRNASMQEFSSRQEFDGRSEVSQEKTMAQVAPSQNVATLDPTEEKILYGSDDNLWDAFGRSDNITAGGYNMADGSDFNSGYSFLQSGSWSALMQSAVAETSSGDMGVQEGWGGVNFNNSGPPNGNQQHSDANDSGKLQPVWVDNNLQTLNSRHSSVSAEANNKPNNYINSANVPAFQQSGHKSFFHQTEGFQNSSAQSSTPPSLEGERKWIDRNLQQKSLAEGRNLSENEGKTSGVEINADNLSGSWLRQQNAPSYNSQPSKPNGWSHIEPMFSHGGNNMKNHENHNMSQSSHGGDHKRSIREEMGSSATFKQNHDSVSNPTDELQHANHAVENSQVYNEGSNLINNAAVANASSLRDDLGSRQQNPINRNLSFWKDANSSMDLKESGFVTKYQHNIDKGSQILESPGNSCLEKGATEMHEIENSNASDTHTSSGSKQKVGGNTIRKPSVTPRRFQYHPMGNLDMDVEPSFGTSHVTQPQAHVQQNSHGFKGSELSNLRPSKSGTEGNSIEVEKSEMRAFGDLPSKRMLPPFGSRFSSSLDKLAGHDPRHVAFPSRLGLSRKYDSLGAKISNQRVAMIYQIFCSKEVPLNSVQNMLELLHKVDQPREQNNATHSPSYRNHSSEMGEAETSDGSVGQTPRNQSSDSQVFGLQLGPPQRLSMQDAALSSHCSSPMVMNSANSTSETGERGHMLLPPVASKQRDLRNNITGPSGHGGNKIPHINAQGNLAANSQSAFPYPRIHLQNQHLVANHTANVFSDRIGIHSRNFDNSSERVENSHMVSTDISRSGLQMNLVSSADTSQQNSGEISNAQNSPQLAQELGSVSISQRAAFSKVSPNEWANVTTQKHSLHADPSKTASDLFKSRVHMENSDKSFSGQKEMDSREKLELEAMAHGENSINMQNIIGREKQMQESPGKQVSGGKSEISLQATTASGGLESAGHHSLGASPSNSMGTRVNIDMSGHSLRPNISSQQHYSLLHQMQAMKNADNDPTNRSGKRFKGPDCGLDSQQAALDGGQLLSHGHSNAVRESSLNHASITHVDAAAVNFSSKKGDAYVSTGDIASSVRSEHSQISPQMAPSWFDQYGTFKNGQTLTVFPGSKNATMKPPLDQPMIVEKPPDGFNAQNSMKQANASADGSEQNNARESSTLMSIEHRNFSAGQPLPLDFVNQSLAAARPKKRKSSAPELLPWNEEMTQSFRRLQDISMADVDWAQATNRLIEKKEDEVEMIDDGLMIKLKRRLNLTTQLVQQLLRPPPFTTLSSDASLHYESVAYLVARFALGDACNIVSSTGTDNALHPESRDPLPERPKVSEKTGDHKIIEIVEEFTKRGQKMEDDLLRVEKRASILDLRVECQDLEKFSVINRFAKFHSRGQVDGGEASSSSDLTASSQKSCPQRYVTALPIPRNLPDRCGINPGTLSHHGIHTREELCGLSVNISFEVWWGFTSVILRCEIGSYHL 1856
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26858046 26872638 + ClCG04G011900.2 Cla04g01165 271393

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01165 1856 MobiDBLite consensus disorder prediction 1688 1711 - -
Cla04g01165 1856 MobiDBLite consensus disorder prediction 882 909 - -
Cla04g01165 1856 PANTHER DENTIN SIALOPHOSPHOPROTEIN-LIKE PROTEIN 1 1809 - -
Cla04g01165 1856 MobiDBLite consensus disorder prediction 260 283 - -
Cla04g01165 1856 MobiDBLite consensus disorder prediction 552 571 - -
Cla04g01165 1856 MobiDBLite consensus disorder prediction 650 700 - -
Cla04g01165 1856 MobiDBLite consensus disorder prediction 1516 1544 - -
Cla04g01165 1856 MobiDBLite consensus disorder prediction 1003 1052 - -
Cla04g01165 1856 MobiDBLite consensus disorder prediction 824 845 - -
Cla04g01165 1856 MobiDBLite consensus disorder prediction 588 604 - -
Cla04g01165 1856 MobiDBLite consensus disorder prediction 1008 1052 - -
Cla04g01165 1856 MobiDBLite consensus disorder prediction 650 665 - -
Cla04g01165 1856 MobiDBLite consensus disorder prediction 824 858 - -
Cla04g01165 1856 MobiDBLite consensus disorder prediction 1521 1544 - -
Cla04g01165 1856 MobiDBLite consensus disorder prediction 503 538 - -
Cla04g01165 1856 MobiDBLite consensus disorder prediction 588 608 - -
Cla04g01165 1856 MobiDBLite consensus disorder prediction 512 538 - -
Cla04g01165 1856 MobiDBLite consensus disorder prediction 882 908 - -
Cla04g01165 1856 Coils Coil 1721 1741 - -
Cla04g01165 1856 MobiDBLite consensus disorder prediction 213 242 - -
Cla04g01165 1856 MobiDBLite consensus disorder prediction 1697 1711 - -
Cla04g01165 1856 PANTHER DENTIN SIALOPHOSPHOPROTEIN-LIKE PROTEIN 1 1809 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01165 - - - csv:101222546 3145.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01165 Cla-Chr4:26858046 Cla11g00449 Cla-Chr11:5099299 6.23E-57 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g640 Blo04g00787 Blo16g00173 . . . Bpe13g00307 Bma06g00157 . Cmo13g01131 . . . . . . Cpe20g00066 . . . . . . . . . . . . . . . Cone2ag0816 Cone16ag0198 Cone13ag0041 Cone19ag0047 Lsi02g00108 Csa01g00588 Chy12g01510 Cme12g01954 . . Bda11g01717 Bda14g00869 . Bpe15g00586 Bma03g00846 . Sed08g2109 . . Cma13g01082 . Car13g00920 . . . Bhi08g01103 Tan05g2375 Cmetu12g1694 Lac10g0137 . . . Cla04g01165 Cam04g1224 Cec01g1735 Cco01g1781 Clacu04g1251 Cmu04g1229 Cre01g1525 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003705 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 4 2 1 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla04g01165 Cla_Chr04 FPKM 7.578489 8.614387 5.535131 5.769322 10.798224 9.926966 10.233731 10.513762 9.827748 9.508457