Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01172 ATGAGTCATTGTGTAGTTCCAAAATGGAATCTGAGCCACGAAAGACAAGAGCAAGCCGAAGAAGAAGAAGAAAATAGATCCTTTCACGTGCCTACTGAGAAGAATCATCACAGTACCACCACTAAACCCCTTGTCTCCTTCTACCAGCAAATGGAAAAACAAGGAGTTACAGAACTAACATGGCAAAATGGGCAACTGGCTCTGCATGGGATTGATGGGCTGCAGCCAACAGTCCCACCAAAGCCCACATGGAACCGAGGCAATGACACGTTGGAGTCCGTAGTCAATCAAGCCAAACTCCACACCCAAGGCCCAAATCTGATCCAGCAAGGCGAACCACTGGTCCATACTGGCCGCACCCTCACATCCTCCGGCGCGAATGGGAAATGGGTTGAGAGGGGAAACCAAGAACCGTCGGCGAGAAAAAGAACACGATCGACTTCCGATTATGGTGGGAAAAATGTCAGCACAAGCGACAATAACAATAACAGCAACACTATGCAAGTGGACCATGGCGATCACAGTGTGTGTGGAAGTGCGAGTGCAGCGTTTTGTAGGGATAATGAGACTACTTTGATGACATGGGCTTCCTTTGATTCTCCTCGAAGCTTGAAAACCAAATCCATTGATGAAGATTCTGCTTGTCATGTTGAATCGGAAAATCAAGAGGAAGAACAAGATACGAAGCGTGTAGCAAATCGCTCTCATTCAGCTAGACGAAGTCGAGCAGCTGCTATACATAATCAATCAGAACGGAGGAGGAGAGACAGAATTAATGAGAAGATGAAAGCTCTGCAGAAGTTGGTGCCAAATGCAAGCAAGACTGATAAAGCTTCAATGCTTGATGAGGTGATTGAATACTTGAAGCAACTTCAAGCACAAGTTCAATTTATGAGTGTGAGGAGTATGCAACAGATGATAATGCCTATAGGAATGCAGCAACAACTTCAAATGTCGCTCCTAGCGCGTATGGGCATGGGGGTCGGTCTAGGCATGGGAATGGGGATGCTCGACATGAGCGGTATGGCACGTTCGGCCCCGCAGGCACTTCCTCCTCTCATCCATCCTACATCGGTTCCCACTACACCTCCTGCATTCGTTCCGCCCCACTTCTTGTTACCCCCTGCGATTCCAAGGCAGGATCCAACACAAACCAAGCCTGCCACCAATGGCTCTGTTGATCCATTTTGTGCCTTTCTAGCACAAACAATGAATATGGATATCTACAACAAAATGGCAGCTCTCTATCGCCAACAAGTTAATCAGACAACAAATGCAATGAGCAGCCCAACACAGTCAAACAATGTGCAAGGAAATTAA 1320 47.05 MSHCVVPKWNLSHERQEQAEEEEENRSFHVPTEKNHHSTTTKPLVSFYQQMEKQGVTELTWQNGQLALHGIDGLQPTVPPKPTWNRGNDTLESVVNQAKLHTQGPNLIQQGEPLVHTGRTLTSSGANGKWVERGNQEPSARKRTRSTSDYGGKNVSTSDNNNNSNTMQVDHGDHSVCGSASAAFCRDNETTLMTWASFDSPRSLKTKSIDEDSACHVESENQEEEQDTKRVANRSHSARRSRAAAIHNQSERRRRDRINEKMKALQKLVPNASKTDKASMLDEVIEYLKQLQAQVQFMSVRSMQQMIMPIGMQQQLQMSLLARMGMGVGLGMGMGMLDMSGMARSAPQALPPLIHPTSVPTTPPAFVPPHFLLPPAIPRQDPTQTKPATNGSVDPFCAFLAQTMNMDIYNKMAALYRQQVNQTTNAMSSPTQSNNVQGN 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26916215 26919333 - ClCG04G011970.1 Cla04g01172 271400

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01172 439 MobiDBLite consensus disorder prediction 216 234 - -
Cla04g01172 439 MobiDBLite consensus disorder prediction 1 40 - -
Cla04g01172 439 MobiDBLite consensus disorder prediction 121 172 - -
Cla04g01172 439 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 242 291 IPR011598 GO:0046983
Cla04g01172 439 Pfam Helix-loop-helix DNA-binding domain 247 292 IPR011598 GO:0046983
Cla04g01172 439 SMART finulus 248 297 IPR011598 GO:0046983
Cla04g01172 439 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 240 303 IPR036638 GO:0046983
Cla04g01172 439 Coils Coil 248 268 - -
Cla04g01172 439 MobiDBLite consensus disorder prediction 13 36 - -
Cla04g01172 439 CDD bHLH_AtPIF_like 242 303 - -
Cla04g01172 439 MobiDBLite consensus disorder prediction 149 172 - -
Cla04g01172 439 PANTHER TRANSCRIPTION FACTOR PIF7 3 434 - -
Cla04g01172 439 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 3 434 IPR031066 -
Cla04g01172 439 MobiDBLite consensus disorder prediction 216 254 - -
Cla04g01172 439 Gene3D - 237 302 IPR036638 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01172 - - - cmo:103489941 788.104
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01172 Cla-Chr4:26916215 Cla06g01563 Cla-Chr6:29197242 5.95E-59 dispersed
Cla11g00581 Cla-Chr11:6578960 Cla04g01172 Cla-Chr4:26916215 1.36E-09 dispersed
Cla04g01172 Cla-Chr4:26916215 Cla02g01446 Cla-Chr2:29000714 1.03E-28 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g623 . . . Bda15g00616 . . . Bma12g00978 . . . . Car10g00201 . . . . . . . . . . . . . . . . . . . . . . Lsi02g00102 Csa01g00581 Chy12g01515 Cme12g01961 . Blo15g00325 . . Bpe07g00768 . . . . . . . . . . . Cpe18g00775 Bhi08g01118 . . . . . . Cla04g01172 Cam04g1229 Cec01g1740 Cco01g1786 Clacu04g1256 Cmu04g1235 Cre01g1530 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007472 1 3 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60947 PF00010 HLH 1.10E-13 No_clan Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla04g01172 Cla_Chr04 FPKM 7.892338 9.44974 19.710213 21.794325 9.984818 11.125597 10.829853 7.853645 6.845965 7.251335