Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01173 ATGGAAGCTTTGATTAGTCAAAAAAGAGTGAGTTTTTCAGATTCAGGACAACATAAAAAGGATGCTTCCATCAAACCTAGAGATGGAATTCCACAGAAAAAAACAAGATCCTTCAAAGAGGATAAAAAGGAGTCCAAGATGTTACAATGGCATTTTTCAAACCAAATGAATGAGGATTATGATTCAAGGGATATAGAGTTTGCCACTGCAGTAGCATCAGTTGCATTTGCAATTCGCTCCCAAGAAGAAACAGATCTACAATATCAGAAAAAGAAGAGAGAAAACCTGGAAACCTCAATAACAAAGGTTAAAAGCAGAAAAGATGATACAGCTGCACTCGCTCCCAGCATAACAAGACGATTGTCTAACAAGGAAACCACCAATCCTGGTCAATCTTCAGTAAAGAAGCCAATGGAACAGGAAAAGATCAAGGAATCAGTGACTGGAATTCCCATACCGCCGCCGAGACGGAACCTTGTACCAACTAAAGCAGATGTGTGGGAGAGAAATAAGATGGAGAAGATTAGTAAAAGGTATCAGAAGATAAAAGCTTCAATTCTTGCTTGGGAGAATGAGAAAAAAATGCGTGCGAAACTTCATATGGAAAAGAAAAAGGTTGAATTGGAGCGCCAAAAGGCACTGGTTCTGCAATATTACCAGGAGAACATAGCACAAATCGACCAGATCGCAGGGGGAGCAATGGCACAGCTAGAAGAGAAGAGAAAAAAGGAAGAGAATAAAGCAAGAAAAACAGCAAACAGAATCAGATCAACTGGAAGACTTCCTGTGACTTGTTTCTGCTTCCAGTATCACTAA 816 39.71 MEALISQKRVSFSDSGQHKKDASIKPRDGIPQKKTRSFKEDKKESKMLQWHFSNQMNEDYDSRDIEFATAVASVAFAIRSQEETDLQYQKKKRENLETSITKVKSRKDDTAALAPSITRRLSNKETTNPGQSSVKKPMEQEKIKESVTGIPIPPPRRNLVPTKADVWERNKMEKISKRYQKIKASILAWENEKKMRAKLHMEKKKVELERQKALVLQYYQENIAQIDQIAGGAMAQLEEKRKKEENKARKTANRIRSTGRLPVTCFCFQYH 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26923842 26925389 - ClCG04G011980.2 Cla04g01173 271401

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01173 271 Pfam Remorin, C-terminal region 162 263 IPR005516 -
Cla04g01173 271 Coils Coil 234 254 - -
Cla04g01173 271 MobiDBLite consensus disorder prediction 13 44 - -
Cla04g01173 271 PANTHER GB|AAD39278.1 20 267 - -
Cla04g01173 271 Coils Coil 172 211 - -
Cla04g01173 271 MobiDBLite consensus disorder prediction 1 44 - -
Cla04g01173 271 PANTHER OS02G0116800 PROTEIN 20 267 - -
Cla04g01173 271 MobiDBLite consensus disorder prediction 119 135 - -
Cla04g01173 271 MobiDBLite consensus disorder prediction 119 140 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01173 - - - cmo:103490088 431.795
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01173 Cla-Chr4:26923842 Cla05g02406 Cla-Chr5:35586867 1.18E-15 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g622 . . . . Bpe12g00529 . . . Cmo13g00940 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00101 Csa01g00580 Chy12g01516 Cme12g01962 . . . . . . . . Sed08g2099 . . Cma13g00913 . Car13g00753 . . . Bhi08g01121 Tan05g2402 Cmetu12g1770 . . . . Cla04g01173 Cam04g1230 Cec01g1741 Cco01g1787 Clacu04g1257 Cmu04g1236 Cre01g1531 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007325 0 1 0 0 1 1 2 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 0 1 1 1 1 5 4 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla04g01173 Cla_Chr04 FPKM 8.688524 11.137603 0.50381 0.845659 0.0 0.0 0.0 0.091352 0.306037 0.086216