Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01176 ATGGTATCAAAGAGATCAGTAATTGGTGTAGAATCATTGAAGGCAAAGAAGAAAGTATGTGTAATTGGAGCAGGAGCCTCAGGGCTTATAGCAGCCAGAGAGCTAAGAAAAGAAGGCCACAAAGTAACAGTTTTGGAGCAGAACGAGGAGGTTGGTGGGCAATGGCTATACGATCCAAATGTAGAAAATGAAGATCCTTTAGGAAAATCAAAATTCCTGAATGTTCATAGCAGCATTTACTCATCTCTAAGGCTTGCTTCTCCAAGGGAAATTATGGGGTTTTCTGATTTTCCTTTTATTACTAAGAAAGGGCGTGACAGTAGGAGATTTCCTGGCCATAAAGAACTGTTTTTGTACTTGAAGGATTTTTGTCAATGCTTTGGTTTGACACAACTCATAAGGTTTAATACTAGAGTTGAATATGTGGGGATTATCAATACTAAAATTGGTTGTTTTGGAGGGATTAAGGATCAGATTCAATGGGTTGTTAGAAGTAGAGATTATTGTAAGTATAAGACAGATTATAATGATGGGGATGATCATCATCATCATCATCATCTGATTGAAGAAGTTTTTGATGCTGTTGTTGTTGCTACTGGACATTATTCTCATCCTAGACTGCCCACCATTAAAGGAATGGACAAATGGAACAGAAAGCAAATTCACAGTCATGTTTATAGGGTTCCTGACCCATTTCGCAACGAGGTAGTGGTGGTGGTGGGAAACTCTCAAAGTGGGCAAGACATATCGCTAGATCTAATAGAAGTGGCAAAGGAAATTCATTTAAGCACAAAATCCATAAACACTATCACTGAGGGTTTATCCAAAGTCATCCAAAAATATCAAAACTTGCATCTTCAACCACAGATTGAATCTCTGGAAGAAGATGGGCGAGTGGTGTTTGTTGATGGGACCTCTATAGTTGCCGATACTATTTTATATTGCACTGGATATTCATACGCATTTCCATTTCTTGACTCGAAAGGAATAGTTGTTGTAGATGATGATCGAGTGGGACCTTTGTATGAGCATACGTTTCCCCCATCTTTGGCTCCCTCCCTTTCGTTTATAGGCATTCCACGAAAGCTCATAGGTTTCCCTTTCTTTGAATCACAAGCAATATGGATAGCTCAACTGCTGTCTGGGAAAAGGACATTGCCATCATGTGATGATATGATGCAATCCATCAAAGAGTTTTATCACTCAAAAGATACTGCTGGCATTCCAAAGCACAATACCCATGATTTAGCTGAATTTGAGTATTGCGATAAGTATGGCGATAACGTTGGATTTCCACGTTTGGAGGAATGGAGGAAAAAACTGTGTGTATCAGCCATTGTAAATTCCTCAATCAACCTCGAATCGTTTCGGGATTCGATGGATGATGATGAGGATCTTCAAGAGGCCTATCAAAGCCCTCACTTCACTCAACTTGGAGCTCAAGTTTTTCCTCTGTAA 1458 39.51 MVSKRSVIGVESLKAKKKVCVIGAGASGLIAARELRKEGHKVTVLEQNEEVGGQWLYDPNVENEDPLGKSKFLNVHSSIYSSLRLASPREIMGFSDFPFITKKGRDSRRFPGHKELFLYLKDFCQCFGLTQLIRFNTRVEYVGIINTKIGCFGGIKDQIQWVVRSRDYCKYKTDYNDGDDHHHHHHLIEEVFDAVVVATGHYSHPRLPTIKGMDKWNRKQIHSHVYRVPDPFRNEVVVVVGNSQSGQDISLDLIEVAKEIHLSTKSINTITEGLSKVIQKYQNLHLQPQIESLEEDGRVVFVDGTSIVADTILYCTGYSYAFPFLDSKGIVVVDDDRVGPLYEHTFPPSLAPSLSFIGIPRKLIGFPFFESQAIWIAQLLSGKRTLPSCDDMMQSIKEFYHSKDTAGIPKHNTHDLAEFEYCDKYGDNVGFPRLEEWRKKLCVSAIVNSSINLESFRDSMDDDEDLQEAYQSPHFTQLGAQVFPL 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26955935 26959160 + ClCG04G012010.1 Cla04g01176 271404

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01176 485 Gene3D - 18 458 IPR036188 -
Cla04g01176 485 SUPERFAMILY FAD/NAD(P)-binding domain 16 261 IPR036188 -
Cla04g01176 485 PIRSF FMO 15 282 IPR000960 GO:0050660|GO:0050661
Cla04g01176 485 PIRSF FMO 268 431 IPR000960 GO:0050660|GO:0050661
Cla04g01176 485 PANTHER DIMETHYLANILINE MONOOXYGENASE 13 479 - -
Cla04g01176 485 PANTHER FLAVIN-CONTAINING MONOOXYGENASE FMO GS-OX-LIKE 8 13 479 - -
Cla04g01176 485 SUPERFAMILY FAD/NAD(P)-binding domain 272 442 IPR036188 -
Cla04g01176 485 PRINTS Flavin-containing monooxygenase (FMO) signature 17 33 IPR000960 GO:0050660|GO:0050661
Cla04g01176 485 PRINTS Flavin-containing monooxygenase (FMO) signature 41 65 IPR000960 GO:0050660|GO:0050661
Cla04g01176 485 PRINTS Flavin-containing monooxygenase (FMO) signature 302 329 IPR000960 GO:0050660|GO:0050661
Cla04g01176 485 PRINTS Flavin-containing monooxygenase (FMO) signature 367 380 IPR000960 GO:0050660|GO:0050661
Cla04g01176 485 Pfam Flavin-binding monooxygenase-like 16 268 IPR020946 GO:0004499|GO:0050660|GO:0050661
Cla04g01176 485 Pfam Flavin-binding monooxygenase-like 284 406 IPR020946 GO:0004499|GO:0050660|GO:0050661
Cla04g01176 485 Gene3D - 209 315 IPR036188 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01176 - - - csv:101221607 802.357
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01176 Cla-Chr4:26955935 Cla10g00282 Cla-Chr10:3712294 4.68E-71 dispersed
Cla04g01176 Cla-Chr4:26955935 Cla07g00144 Cla-Chr7:1663278 2.70E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g609 Blo04g00784 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00096 . Chy12g01520 Cme12g01966 . . . Bda14g00865 . . Bma03g00842 . Sed08g2095 . . . . . . . . Bhi08g01127 Tan05g2408 Cmetu06g2174 . Hepe07g1737 . . Cla04g01176 Cam04g1233 Cec01g1744 Cco01g1790 Clacu04g1261 Cmu04g1240 Cre01g1534 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009615 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla04g01176 Cla_Chr04 FPKM 1.003788 0.568454 1.421293 2.520683 0.551533 0.66768 0.326679 4.085788 5.640101 6.063406