Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01180 ATGGGGTGTGTGAACTCGAAGCAGGCAGTGTCCGTCACGCCTGCATTCGATCACTCCGGCGTGTTTCGAGACAATGAATCAACGGCGGTGGGGAACTCGGGTCGGAGCCGAGTTGGGTTCGGGGAGATTGAGAAGAGTTCGAAGCCGAAGGCTAAGATGAAGACGAAGGGGTCCAGTGAGTTTAATGGGGTTGGGTGCGAGTTCGGTGAGTCGGGGAGAGCGAGTTCAAATGGTGGAGGAAATGAGACTTTGAGCTTCAGATTGGGGAATTTGAACAAGTATATGGAAGGCGAACAAGTGGCGGCGGGGTGGCCGGCCTGGCTCAGCGCTGTCGCCGGTGAGGCCATTCAAGGTTGGGTTCCACTCCGGTCCGATGCCTATGAGAAGTTGGAAAAGATTGGACAAGGTACATATAGCAGTGTATTCCGAGCACGTGAACTTGAAACGGGAAGGATCGTTGCTCTAAAGAAAGTTCGATTCGACAATTTTGAGCCTGAAAGTGTTAGATTTATGGCACGAGAGATCATGATTCTCCGCAGGCTTGATCACCCTAACATCATCAAATTGGAGGGCTTAATTACATCTCGTTTATCATGTAGCATTTACCTCGTGTTTGAGTACATGGACCACGACATTACTGGACTCTTGTCCTGCCCCGATATCACTTTTAGTGAATCGCAGATTAAATGCTACATGAAACAATTGATATCCGGGCTTGAGCATTGTCACTCACGTGGTGTAATGCATCGGGATATTAAAGGATCTAATCTTCTAGTCAATAATGAAGGGATATTGAAGGTGGCTGATTTTGGATTGGCAAACTTCTGTAATTCCGGGCACCGACAACCTCTAACGAGTCGCGTTGTCACTCTGTGGTATCGTCCTCCTGAACTTCTACTGGGTTCAACAGACTATAATGCATCTGTGGATCTTTGGAGTGTTGGCTGTGTTTTCGCAGAACTTTTAGTTGGAAAACCTATTCTTCAAGGAAGAACAGAGGTCGAACAGCTACACAAGATCTTCAAGCTTTGCGGCTCTCCTCCTGATGAATACTGGAAAAAATCTAAACTTCCTCATGCCACTTTGTTCAAGCCACAACATCCTTATAATAATTGTTTACGGCAGACCTTCAAAGATTATCCTCCGACGACTGTGAACTTGTTAGAAACTCTTCTTTCCGTGGAACCATACAAGCGTGGAGTTGCCTCCTCTGCTCTCACATCTGAGTATTTCAGTGTGAAACCGTATGCATGCGATCCATCAAGCATGCCTATATATCCACCTAACAAAGAGATTGATGCCAAACAAAGAGAGGAGACTAGAAGGGGGTTTGGTGTAGTGGACTTATGTCTATCTCCACCAGTGCCAAAAATTTTCAAGCACGTGTCTATTAAGTATTGCCAATATGTGTATTACATTGAAAACGTATGTTACAATGGCAAGTCCAAGTCCTCTTTGGATCTTGTAAAGGCTTTGAAAAAAGGTAGTGGAAGAGCCCGTGGACTAGATAACAGAAGGTTAACGCGAAAGCATCTTGGAATCAGTAAATTGGCACCAGCAGAGGACTTATCAGTCTCAGCTCGAGATTTGCATAAAATTAGTATTAATGCACAAAATTTTAAAGAAGAAAAAGTTATCAAAGGTGTTGAGGCGCAAAAGCTGTCTATTGATAAATTGGAAGAGACCATACATGTAAAGAATGCATCTCAAGGAGACATTCCCTTCTCTGGCCCCCTACAAGTTTCGACATCAAGTGGCTTTGCGTGGGCTAGACGACGAAGAGACGATGCCTCTATTAGATCTTATTCCAGGTCAATTTCAAGAGGACACTTAATTAATGGGCTGGACGATTCTACTACATTGCATTCAAGAAGCAATTTGGACTCTAAGTTTCATGAAAAGGGTGACATGTCGTCCATCAGCCGCTCAAGTTCCAAGGGTCATGAATCAAATGAGAGATCAAAGGTTGTGACAAGGAACCAGTGGGGCAAGTTTGAGCGTCCTGATTCCTTTGATACTTCGGATGAGTACCACTCGCAGGAATTTGCATCGGCACTGTATATGCGAGATGAAATGGAAGCTAAGAGAAATAATCTGAGTTATCAGGACCAAGTGGACAAAGTTGAATATTCTGGGCCCTTGTTATCTCAATCTAGCAGAGTGGATGAACTGCTAAACAGACACGAGAGGCATATCCGACAGACAGTTCGAAGGTCATGGTTTCAAAGAGACAACGTTGAAATTCCTCATCAGACAACAAGTTTTCAGCACCTTCGTTGCGAGCTCGTTTGTCTTTCTGTCTGCAGTCCTTTTGTTCTCACGCTTCTACATCTACGTTCTTTTAAAGATTATCTGTTCTCACCCTTGCATTTTGGGCTTAACCATCCAAACAGATTAGGAGTTAAGACACCTAATATGCACACGGGAAAGAAGTCGAACCGAAATCAGATCATAAATCAAATCATAAACTCGTTGTTTCGCAATCAAATCGCTTCCATTGTTTGGGAGCCAAGGACAAAAGGAAGAGGACATTCACAATGTACAAAGTTAAACCATTTGGGTCATGAAAACAAGATAAATCTTGCTGGGGAAAGATGGGGGCAAAGGGATGTGAAGATTCAGAGTGGAATAGTGCTTTTAGGATTAAGATTGTGA 2655 43.95 MGCVNSKQAVSVTPAFDHSGVFRDNESTAVGNSGRSRVGFGEIEKSSKPKAKMKTKGSSEFNGVGCEFGESGRASSNGGGNETLSFRLGNLNKYMEGEQVAAGWPAWLSAVAGEAIQGWVPLRSDAYEKLEKIGQGTYSSVFRARELETGRIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMDHDITGLLSCPDITFSESQIKCYMKQLISGLEHCHSRGVMHRDIKGSNLLVNNEGILKVADFGLANFCNSGHRQPLTSRVVTLWYRPPELLLGSTDYNASVDLWSVGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPDEYWKKSKLPHATLFKPQHPYNNCLRQTFKDYPPTTVNLLETLLSVEPYKRGVASSALTSEYFSVKPYACDPSSMPIYPPNKEIDAKQREETRRGFGVVDLCLSPPVPKIFKHVSIKYCQYVYYIENVCYNGKSKSSLDLVKALKKGSGRARGLDNRRLTRKHLGISKLAPAEDLSVSARDLHKISINAQNFKEEKVIKGVEAQKLSIDKLEETIHVKNASQGDIPFSGPLQVSTSSGFAWARRRRDDASIRSYSRSISRGHLINGLDDSTTLHSRSNLDSKFHEKGDMSSISRSSSKGHESNERSKVVTRNQWGKFERPDSFDTSDEYHSQEFASALYMRDEMEAKRNNLSYQDQVDKVEYSGPLLSQSSRVDELLNRHERHIRQTVRRSWFQRDNVEIPHQTTSFQHLRCELVCLSVCSPFVLTLLHLRSFKDYLFSPLHFGLNHPNRLGVKTPNMHTGKKSNRNQIINQIINSLFRNQIASIVWEPRTKGRGHSQCTKLNHLGHENKINLAGERWGQRDVKIQSGIVLLGLRL 884
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26985318 26991349 + ClCG04G012050.2 Cla04g01180 271408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01180 884 MobiDBLite consensus disorder prediction 646 661 - -
Cla04g01180 884 ProSiteProfiles Protein kinase domain profile. 127 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g01180 884 Pfam Protein kinase domain 127 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g01180 884 CDD STKc_CDK9_like 127 411 - -
Cla04g01180 884 Gene3D Transferase(Phosphotransferase) domain 1 210 448 - -
Cla04g01180 884 SMART serkin_6 127 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla04g01180 884 MobiDBLite consensus disorder prediction 25 58 - -
Cla04g01180 884 MobiDBLite consensus disorder prediction 628 661 - -
Cla04g01180 884 PANTHER CELL DIVISION PROTEIN KINASE 53 442 - -
Cla04g01180 884 SUPERFAMILY Protein kinase-like (PK-like) 121 413 IPR011009 -
Cla04g01180 884 ProSitePatterns Serine/Threonine protein kinases active-site signature. 247 259 IPR008271 GO:0004672|GO:0006468
Cla04g01180 884 Gene3D Phosphorylase Kinase; domain 1 114 209 - -
Cla04g01180 884 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 53 442 - -
Cla04g01180 884 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 493 742 - -
Cla04g01180 884 MobiDBLite consensus disorder prediction 41 55 - -
Cla04g01180 884 ProSitePatterns Protein kinases ATP-binding region signature. 133 156 IPR017441 GO:0005524
Cla04g01180 884 PANTHER CELL DIVISION PROTEIN KINASE 493 742 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01180 Cla-Chr4:26985318 Cla11g00429 Cla-Chr11:4948841 6.50E-18 dispersed
Cla04g01180 Cla-Chr4:26985318 Cla03g01582 Cla-Chr3:31590266 2.97E-174 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80517 PF00069 Pkinase 1.40E-67 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01180 - - csv:101220347 1272.3