Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01181 ATGGCGCTGTTTAGAAAATTATTCTACCGGAAGCCTCCAGATCGGCTTCTCGAGATCGCGGAGAGAGTGTACGTGTTTGATTGTTGCTTCTCTACCGAGGTGTTGGAGGAGGATGAGTACAGAGTGTACTTGGGTAGCATTATACCAAAGCTGCAAGACCACTTTCCGGATGCATCTTTCATGGTGTTTAACTTTAGTGAACGAAAGAGGAAGACTAAAACTTCGGATATCCTGTCTCAATATGGTATGACAGTGATGGAATATCCTCTTCAATATGAAGGGTGTTCACTACTGCCATTGGAGATGATCCACCACTTCATTCGGTCGAGTGAAAGTTGGTTGTCATTGGAGAGACAGAAAAATGTATTGTTGATGAACTGTGAACGAGGCGGATGGCCAATCCTTGCTTTCATGCTTTCAGGTCTTTTATTGTACCGTAAACAATATGAGGGGGAGCAGAAGACCCTTGAAATGGTCTATAGGCAAGCTCCTAGAGAACTTTTCCGTGTCCTATCTCCTGTTAACTCACAGCCTTCTCAAATGAGATACCTTCAGTATATTTCTAGGAGAAATTTAGGTTCTGATTGGCCTCCACCTGATACACCCCTAATTTTAGACTGTCTGATACTTCGAGAGCTTCCTATGCTTGGTGGAGGAAAAGGGTGGAGGCCTATCATACGCATTTACAGTCAGGACCCATTAACACCACGAAATAGAAGCCCAAAACTTGTCTTCTCGAGCGCAAAGAAGGAAAGACATGGTTGCCAGTATCTACAGGCAGCAAGCAGATTAGTAAAAGTGGATGTCCATTGTCACATTCAAGGTGATGTTGTTCTTGAATGCATCCGTTTAGATGGAGATCTAATACATGAGGAAGTGATGTTTAGAATTATGTTTCACACCGCATTTGTGCATTCAAACAGTTTGAAGCTCAATTGTGACGAGGTTGATGTTTTATGGGATGCCAAGGAGCAGTTTTCTAAAGATTTTAGAGCAGAGGTACTTTTTCTGGATGCTAATCATGTTGTGCCAAACAACCGTCCCTTGACCAGAAGTGATGATAAAATTGAGATTGAAAGCAATTCAACTGAGGAATTTTTTGAAGTGGAAGAAATATTTAGCAATATTGTTGACGTGCAGGAAGTTAAGAGGGATTATGATGTTCAAGCAGTACATGCTAACGAAACAGATTATATTGACCATCAACCAGTTTGGAAGGAGGATGCAGATCCTCCTACATTCCAACGCTGTAAATCATTTGGAGGGAGTCAAAACTTGGACAAGAAGATAGATTGTAACGTTGAAGCAGTGAAGGACATTACTGTTGATGATGTAACTTTCAAGACAGCTGAAAAAGTGGACTCTGGTCTTCAAGTAGTGAAGGACATTGTTGTGGATTATGGAGATAAGAAGCCAAATCCTCTGCTATTTTCTGTTAATGTACTGAGACGTATGGCAATCAAGGAACTGATTGATGATGCTTATGACAAGTTGGAAGGGGTGCAGCATAAAGGGTACGGAGAAGATACTGCCATTCCACACTTTGAATCAAAGGTTCCTTCGAAAAAGTTGGAAGCTGATGCGTGGAGGCTTAAATTTGAGAAGTTGCAATCAACGTCAAGGAAACAGCCGTCATCAACAATTAAGCCAATAAATCATGCAATTGTAGCTAAACAGAAAACCGAACAGCCAGAAGATCAGTTTCTTGTAAAACAGGCCAAACCAAATACTCTTTCTAGATTGATTTCACATGACAAAGAACCTTACACAAACTCCATGCATTTGTTTTATCCACCATCAAGGCATACTGGTGACTCAGCAACAGCTATTAGTTCTCCTACTAAAGATTTTTATTCATATTCAACTTTAAAATCTGCTTCTGCTTCTGCTACTTCAGGACTGCTGCTGTCTGATACAGCTGATGAACAAAAAAGTGACAAGGTGAGTCCTAAGAAACCTTTATGTTCTGCAACAGAGATTCTCAAGAGTAAACCACAATCACCACTTGACTCCTCAAGACCATTGCCAAACGCTGTTCACTATCAAGATCCTACTCTTCCTCTATCTGCTACTACACTTCTACAGCCACCAGCTCTTCAGGCCAACACATCTTTCTTGCATGCATCATCTCCTAAATCTTCTTTGTCTCCCTCTACACATTATCACAAAAATGCAAGATCTCCTCCTCCAGCTCCGCCTCCACCACCACCTCCTCCACCTAAAAGTTCATCATTAGTGTGTGGAAATACACTTAAGCATAGTGCTCCACCAGCACCACCTCCACCTCCCATACGTAGAGCTCAACCACAATTACCTCCCCCACGACCACCCTCATCACATGGAGCTCTGCTTTCTCCATGCCTATCAAATGCTGGAGCTTTTCCACCACCCCCTCCGCCACCTCCTCCAATTCAGAGGAGAGCTCCTCCACATTTAACCCAGGGGCAACAGGCTTTAACATCTGCAACAGCCTGTGTTGTCTCATCTTCCCTGCCATCTCCAATTTGTGAAGCACCATCACCTGCTCAACCTACAACTGGTCCCCTTCCCCCGGTTCCTTCTTCTTCTTCTAAACCTTCAGGAGGTATGACTCCACACCTGGGAGCTAAAGGAGTAAGTTCTTCAACTGATGTGAAAACATCATCTATAGTGAGGGGACGTGGGTTCTCGCGGTCAATTGGGATGGGGGTGGCTACTACAGGGCTTCAACGATCATCATTGAAACCTCTGCATTGGAGCAAGGTGACTCGGGTACTACAAGGGAGCTTATGGGAAGAATTGCAAAGATGCGGAGATTCTGAAAGTGCACCAGAATTTGATGTATCTGAGCTGGAGACGCTTTTCTCTGTGATTGTCCCTAAACCTATTGTTGATTCCGGAGGTAAATCTGGAGGACGAAGGAAGTCAGTTGGATCAAAATTGGACAAAGTTCACTTGATTGATCTTAGGAGGGCAAATAACACTGAAATCATGCTAACAAAAGTTAGGATGCCACTATCTGATATGATGGCAGCAGTACTCTCCATGGATGAGTCAGTACTAGATGTAGATCAAGTGGAAAATCTTATCAAATTTTGCCCCACCAAAGAGGAGATGGAGCTTCTCAAGGGATACTCTGGTGACAAGGATAAACTTGGCAAGTGCGAACAGTACTTTTTGGAGATGATGCAAGTTCCTCGTGTGGAGTCAAAGTTAAGAGTGTTTTCTTTCAAGATTCACTTCAGCTCTCAGGTTTTGTGGTATCTGCAACTCTTCATTTATAACCTATTTTTAATAGCAGAGTTCAAAAAAAGCCTAAACACTGTAAACTCTGTCTGTCAAGAGGTGAAGAATTCTCGCAAATTGAAGGAGATAATGAAGAGAATTCTTTGCCTGGGAAATATGCTGAACCAAGGAACAGCTAGGGGTTCGGCAATTGGATTCAGGTTGGATAGCCTCTCAAAACTCACTGATACACGTGCTTCTAACAATAAGTTGACTCTCATGCATTATCTGTGTAAGGTCCTTGCTTCGAAGTCACCATCACTTCTTGATTTTCATCTGGACCTTGGTAGCTTAGAAGCTGCGTCTAAGATACAATTGAAATCTTTGGCAGAAGAAATGCAGGCAATAACAAAAGGATTGGAAAAGGTGAAGCAGGAACTGGTTGCATCTGAAAGCGATGGCCCCATCTCTGAAACTTTTCATAAGATATTGGAAGGATTTGTTACTCTTGCCGAGATGGAGGTGGAATCTGTGACAGTTCTTTACTCAGTGGCGGGTAGAAATGCTGATGCACTTGCACTATATTTTGGCGAGGATCCTGCCCGTTGTCCATTTGAACAAGTTACAGGAACCCTCTTCCATTTTACAAGGTCCTTTTTGAAAGCACATGAAGAGAACTGCAAGCAGTTAGAAATGGAGATGAGAAAGATGAGAAAATAG 3924 42.69 MALFRKLFYRKPPDRLLEIAERVYVFDCCFSTEVLEEDEYRVYLGSIIPKLQDHFPDASFMVFNFSERKRKTKTSDILSQYGMTVMEYPLQYEGCSLLPLEMIHHFIRSSESWLSLERQKNVLLMNCERGGWPILAFMLSGLLLYRKQYEGEQKTLEMVYRQAPRELFRVLSPVNSQPSQMRYLQYISRRNLGSDWPPPDTPLILDCLILRELPMLGGGKGWRPIIRIYSQDPLTPRNRSPKLVFSSAKKERHGCQYLQAASRLVKVDVHCHIQGDVVLECIRLDGDLIHEEVMFRIMFHTAFVHSNSLKLNCDEVDVLWDAKEQFSKDFRAEVLFLDANHVVPNNRPLTRSDDKIEIESNSTEEFFEVEEIFSNIVDVQEVKRDYDVQAVHANETDYIDHQPVWKEDADPPTFQRCKSFGGSQNLDKKIDCNVEAVKDITVDDVTFKTAEKVDSGLQVVKDIVVDYGDKKPNPLLFSVNVLRRMAIKELIDDAYDKLEGVQHKGYGEDTAIPHFESKVPSKKLEADAWRLKFEKLQSTSRKQPSSTIKPINHAIVAKQKTEQPEDQFLVKQAKPNTLSRLISHDKEPYTNSMHLFYPPSRHTGDSATAISSPTKDFYSYSTLKSASASATSGLLLSDTADEQKSDKVSPKKPLCSATEILKSKPQSPLDSSRPLPNAVHYQDPTLPLSATTLLQPPALQANTSFLHASSPKSSLSPSTHYHKNARSPPPAPPPPPPPPPKSSSLVCGNTLKHSAPPAPPPPPIRRAQPQLPPPRPPSSHGALLSPCLSNAGAFPPPPPPPPPIQRRAPPHLTQGQQALTSATACVVSSSLPSPICEAPSPAQPTTGPLPPVPSSSSKPSGGMTPHLGAKGVSSSTDVKTSSIVRGRGFSRSIGMGVATTGLQRSSLKPLHWSKVTRVLQGSLWEELQRCGDSESAPEFDVSELETLFSVIVPKPIVDSGGKSGGRRKSVGSKLDKVHLIDLRRANNTEIMLTKVRMPLSDMMAAVLSMDESVLDVDQVENLIKFCPTKEEMELLKGYSGDKDKLGKCEQYFLEMMQVPRVESKLRVFSFKIHFSSQVLWYLQLFIYNLFLIAEFKKSLNTVNSVCQEVKNSRKLKEIMKRILCLGNMLNQGTARGSAIGFRLDSLSKLTDTRASNNKLTLMHYLCKVLASKSPSLLDFHLDLGSLEAASKIQLKSLAEEMQAITKGLEKVKQELVASESDGPISETFHKILEGFVTLAEMEVESVTVLYSVAGRNADALALYFGEDPARCPFEQVTGTLFHFTRSFLKAHEENCKQLEMEMRKMRK 1307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26995366 27006299 + ClCG04G012060.2 Cla04g01181 271409

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01181 1307 Gene3D Formin, FH2 domain 899 1298 IPR042201 -
Cla04g01181 1307 MobiDBLite consensus disorder prediction 707 723 - -
Cla04g01181 1307 SMART it6_source 897 1306 IPR015425 -
Cla04g01181 1307 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Cla04g01181 1307 MobiDBLite consensus disorder prediction 754 780 - -
Cla04g01181 1307 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 14 188 IPR029021 -
Cla04g01181 1307 Gene3D Protein tyrosine phosphatase superfamily 14 204 IPR029021 -
Cla04g01181 1307 MobiDBLite consensus disorder prediction 836 883 - -
Cla04g01181 1307 ProSiteProfiles Formin homology-2 (FH2) domain profile. 897 1307 IPR015425 -
Cla04g01181 1307 Pfam Formin Homology 2 Domain 905 1287 IPR015425 -
Cla04g01181 1307 MobiDBLite consensus disorder prediction 791 808 - -
Cla04g01181 1307 SUPERFAMILY Formin homology 2 domain (FH2 domain) 795 1307 - -
Cla04g01181 1307 MobiDBLite consensus disorder prediction 869 883 - -
Cla04g01181 1307 SMART PTEN_C2_2 198 338 IPR014020 -
Cla04g01181 1307 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 336 IPR035892 -
Cla04g01181 1307 MobiDBLite consensus disorder prediction 707 824 - -
Cla04g01181 1307 MobiDBLite consensus disorder prediction 640 683 - -
Cla04g01181 1307 Coils Coil 1194 1214 - -
Cla04g01181 1307 MobiDBLite consensus disorder prediction 726 743 - -
Cla04g01181 1307 PANTHER FORMIN-J 1 1305 - -
Cla04g01181 1307 Pfam C2 domain of PTEN tumour-suppressor protein 199 336 IPR014020 -
Cla04g01181 1307 Coils Coil 1288 1307 - -
Cla04g01181 1307 Gene3D - 205 336 - -
Cla04g01181 1307 MobiDBLite consensus disorder prediction 837 855 - -
Cla04g01181 1307 MobiDBLite consensus disorder prediction 810 824 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01181 - - - bhj:120083459 2188.3
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla04g01181 Cla06g01570 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01181 Cla-Chr4:26995366 Cla06g01227 Cla-Chr6:25525775 2.39E-148 dispersed
Cla04g01181 Cla-Chr4:26995366 Cla06g01570 Cla-Chr6:29256796 4.92E-159 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g592 Blo04g00779 Blo16g00180 . . . Bpe13g00300 Bma06g00166 . . . Cma10g00209 Cma11g00123 Car10g00196 Car11g00171 . Cpe20g00055 Cpe04g01480 Bhi02g00293 Tan09g2089 . . Hepe09g0095 . . Cla06g01570 Cam06g1735 Cec06g1796 Cco06g1795 Clacu06g1702 Cmu06g1648 Cre06g2459 Cone2ag0827 Cone16ag0189 Cone13ag0054 . Lsi02g00091 Csa01g00571 Chy12g01523 Cme12g01971 . . Bda11g01706 Bda14g00861 . Bpe15g00594 Bma03g00847 . Sed08g0241 Cmo10g00227 Cmo11g00187 Cma13g01093 . Car13g00929 . . Cpe18g00780 Bhi08g01136 Tan05g2418 Cmetu02g1238 Lac10g0118 Hepe07g2490 . . Cla04g01181 Cam04g1237 Cec01g1748 Cco01g1794 Clacu04g1265 Cmu04g1244 Cre01g1538 Lsi06g01445 Csa01g00260 Chy02g02475 Cme02g01861
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla07g00231 . 181 996 FH2 protein (formin) Gene Family AT3G25500 50.1 5.5e-181 632.1
Cla11g00087 . 468 934 FH2 protein (formin) Gene Family AT3G25500 65.8 4.1e-160 562.8
Cla03g01635 . 496 893 FH2 protein (formin) Gene Family AT3G25500 51.7 3.2e-104 377.1
Cla07g00231 . 588 1013 FH2 protein (formin) Gene Family AT2G43800 56.5 5.6e-126 449.1
Cla02g00812 CCT 441 933 FH2 protein (formin) Gene Family AT5G54650 59.2 4.9e-154 542.3
Cla11g00087 . 481 916 FH2 protein (formin) Gene Family AT5G67470 59.3 3.7e-125 446.4
Cla07g00231 . 580 1013 FH2 protein (formin) Gene Family AT5G67470 55.3 1.4e-121 434.5
Cla03g01635 . 496 895 FH2 protein (formin) Gene Family AT5G67470 50.9 9.4e-105 378.6
Cla05g02507 . 349 832 FH2 protein (formin) Gene Family AT1G59910 52.1 7.6e-126 448.7
Cla02g01189 . 730 1033 FH2 protein (formin) Gene Family AT5G48360 52.3 5.7e-74 276.2
Cla07g00225 . 1 1476 FH2 protein (formin) Gene Family AT1G31810 59.8 0.0e+00 1153.7
Cla06g01227 . 1 1245 FH2 protein (formin) Gene Family AT1G31810 51.0 1.5e-241 833.6
Cla06g01570 CCT 1064 1388 FH2 protein (formin) Gene Family AT5G07650 74.2 9.7e-130 461.5
Cla04g01181 CCT 980 1304 FH2 protein (formin) Gene Family AT5G07650 67.4 9.4e-117 418.3
Cla06g01227 . 935 1254 FH2 protein (formin) Gene Family AT5G07650 62.9 1.1e-109 394.8
Cla05g01683 . 1112 1437 FH2 protein (formin) Gene Family AT5G07650 64.4 1.6e-108 391.0
Cla07g00225 . 1131 1473 FH2 protein (formin) Gene Family AT5G07650 57.7 1.3e-105 381.3
Cla06g01570 CCT 909 1381 FH2 protein (formin) Gene Family AT5G07770 56.8 2.1e-129 459.9
Cla04g01181 CCT 903 1304 FH2 protein (formin) Gene Family AT5G07770 61.0 2.4e-125 446.4
Cla05g01683 . 1036 1429 FH2 protein (formin) Gene Family AT5G07770 59.0 5.4e-117 418.7
Cla06g01227 . 858 1246 FH2 protein (formin) Gene Family AT5G07770 57.3 4.5e-116 415.6
Cla07g00225 . 1067 1467 FH2 protein (formin) Gene Family AT5G07770 53.7 1.0e-112 404.4
Cla05g01683 . 1028 1437 FH2 protein (formin) Gene Family AT3G32400 75.6 5.6e-168 587.8
Cla06g01227 . 865 1255 FH2 protein (formin) Gene Family AT3G32400 69.2 2.9e-148 522.3
Cla07g00225 . 1067 1472 FH2 protein (formin) Gene Family AT3G32400 63.7 3.5e-138 488.8
Cla06g01570 CCT 909 1388 FH2 protein (formin) Gene Family AT3G32400 54.2 5.5e-131 464.9
Cla04g01181 CCT 873 1307 FH2 protein (formin) Gene Family AT3G32400 56.4 5.1e-129 458.4
Cla05g01683 . 1 1437 FH2 protein (formin) Gene Family AT2G25050 50.1 0.0e+00 1137.5
Cla06g01227 . 1 1255 FH2 protein (formin) Gene Family AT2G25050 53.6 2.1e-290 995.7
Cla06g01570 CCT 910 1388 FH2 protein (formin) Gene Family AT5G07780 52.0 2.4e-112 402.9
Cla04g01181 CCT 904 1307 FH2 protein (formin) Gene Family AT5G07780 56.2 1.7e-110 396.7
Cla05g01683 . 1037 1430 FH2 protein (formin) Gene Family AT5G07780 53.8 1.5e-101 367.1
Cla06g01227 . 865 1254 FH2 protein (formin) Gene Family AT5G07780 53.8 1.9e-101 366.7
Cla07g00225 . 1068 1468 FH2 protein (formin) Gene Family AT5G07780 50.6 3.0e-99 359.4
Cla06g01570 CCT 1067 1395 FH2 protein (formin) Gene Family AT5G07760 74.3 9.9e-128 454.9
Cla04g01181 CCT 979 1307 FH2 protein (formin) Gene Family AT5G07760 66.7 2.1e-114 410.6
Cla06g01227 . 934 1254 FH2 protein (formin) Gene Family AT5G07760 64.7 5.5e-110 396.0
Cla05g01683 . 1111 1446 FH2 protein (formin) Gene Family AT5G07760 63.4 8.7e-108 388.7
Cla07g00225 . 1141 1473 FH2 protein (formin) Gene Family AT5G07760 58.1 1.4e-102 371.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001040 2 2 4 3 2 2 4 2 2 2 2 2 4 2 2 5 2 4 4 2 2 2 4 2 2 3 3 6 3 1 82
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla04g01181 Cla_Chr04 FPKM 3.968808 3.559689 3.019794 3.786583 5.151702 5.81181 6.103847 2.600351 2.151404 2.777222