Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01184 ATGCAAGTTAACCAAACCGCCATTCCCGCCATTGGAAGTAGCTCCAGAGTTAGGCAACAATTTCTTTTCTCTGTATTAAAGTGCTGTCTATCTGTTCGTAATCTTGCGAAAATCCATGCTCAAATAGTCGTCAGCGGCTTTGCCCAGAAAAATTACATCCTTGTCAATCTTTTGTCGCTCTATATCTCTTTTGGTTCTCTTGGAAGTGCCCAGAAAGTTTTCGAGGATATTAGGACACCGAGTACGACTGTGTGGAACCAGATAATTAGAGGCCATGCGCGGAGCAAAACGCCACAAGAATCGATTGAGCTGTTCAAACGAATGACAGTGGCGGAAGTTGAGGCTGATGGGTTCACGTATTCGTTTCTTCTGAGTGCGTGTGTGAGATCGAGGTTATTCAGAGAGGGGGAACAGATTCATGGGAGAGTTTTAGCAAATGGGTATTGGTCCAACTTGTATGTTAGAACGAATTTGATCAATTTATACGCAAATGGTGGAGGTCGAGGGGATTTTGATCTTAAGCGTGCGCGTTACATGTTTGATGAAATGCCTGACTCAAATGTCGTGGGTTGGAATTCCTTGCTCGCAGGGTATGTTAGACGTGGTGATTTTGATGGGGCTAGAAAAGTTTTTGACGAGATGCCTGAAAGGAATGTCCAGACATGGACTACAATGGTTGCAGGGCTTGCTCAAAATGGCCATTGTAAGCTAGCTTTGTCACTATTTAATCAAATGAGAAGGGCTGGTGTGGAATTGGATCAAGTGGCGTTGGTGGCTGCATTGTCAGCTTGTGCTGAATTGGGAGACTTGACATTGGGAAAATGGATTCATAGGTATGTTGAAAGAACATGGCGGAGTAGACACTTCCCTGTCTTGGTGTCTCTGAACAATGCTCTGATGCATATGTATGCAAGTTGTGGTGTTATGGATTTAGCATATAAAGTGTTTGAAGAAATGCCCCAACGAAACACCGTGTCTTGGTCAAGCATTATCACTGGGTTTGCGAAACAGGGTTGTGGAGAAGAAGCCATTAGAGTCTTTCAGTTGATGCTGTGCTCTGGCCAAAATGAAGTTAGACCTGACGAGATAACCTTCATCGGAGTTCTCACTGCTTGTAGTCATGCCGGTTTGATCATCGACGGCATCCGAGTTTTCCAGTCTATGCACAAAACTTTCGGAGTCATCCCGCAGATTGAGCATTATGGATGCATGGTTGATCTCTTAAGCCGTGCAGGTTTACTGAGTGAAGCGTTGAGGCTGATTGAAAGTATGCCAATGAAGCCAAATAATGCTGTGTGGGGAGCACTTCTCAGCGGCTGTAGAATTCACAAGAACGACGAGATCGCATCCCATGTTGCGAAACAATTGGCTTTCGAAATCGATCCCAGCAAACAGGCTGCTGGATACTTCATGCTCCTAGCTAATGTTTATGCTGCAGACAAACGTTGGCGAGACACTGCCATTGTGAGACAGAACATGCTCGACATAGGAGTGAAGAAACCTTCAGGAAGAAGTTGGATTGAGATTAATGGAGTTGTATGTGATTTCGTGGCGGGGGATGAGACTCATAAGGATGTGAGTTTAATTTATGAGATGCTTGGTAACATAACCAGCCAAGCCCGGATGGAAAGCTGCAAATCAGAGACAATATCAGAGGCATTGGTTGGTTCTGGTTTAGCGGTTATGGATTGCAAGGAGCTCAATTTAAACGAAGATTGTGGTGGCTGTGGTAGCGGGGGAAAGAATGGGGGAGATGGGTTTATAGACAGGAGCAAAGTGAGGATTTTGCTGTGCGATAATGATTCAAAAAGTTCAGAAGAGGTTTTCAAGCTTCTTTTGAAATGTTCCTACCAGGTCATTTCCGTGAGTTCTGCTAGGCAGGTCATTGATGCTTTGAATGCGGAGGGACCTGAAATCGATATTATACTCTCGGAAGTTGATCTGCCAATGGCCAAAGGTATGAAAATGTTGAAGTATATCACCCGGGATAAAGAGCTCCGACGCATTCCTGTTATCATGATGTCAACACAAGATGAGGTCCCTATTGTCGTTAAGTGCTTGAGGCTTGGAGCAGCTGACTATCTTGTAAAGCCTTTACGGACAAATGAGCTATTAAACTTGTGGACGCACATGTGGAGAAGAAGACGCATGCTTGGACTGGCGGAAAAAAACATTTTGAATTATGAATTTGATATGGTGGCATCAGACCCAAGTGATGCTAATACGAATAGTACTACTTTGTTCTCGGATGACACTGATGACAAGTCACGTAGGAGCACAAATCCAGATATGGCAATTGCTGCGACCCATCAGGAAGATGAGTCTGGTATTGCCGCCGCACTTGTAGAGCCTCCTGCTGTTCATACAGTGAAACATCAGCCAGATGTACCTGGAATCAGTGAGCGTCGAACAGGGCAACCTTCATCATGTCCTAGAAAGAGTGAACTAAAGATTGGGGAATCATCCGCATTCTTTACCTATGTCAAATCAAGAGCTGTGAAAAATAAGGCAGTAGATGTTGAAGATAATGCTAAACGACTTTTGCTGGACGAAAATCATCAAGAAACTAGTCATCGTGCAGCTCATCTTCCCCCAATACAAGAAAATGGGGAGGCCTTGGAAAGCCATTCCCAAGGAGACGAATTCCCAAGCAGTAGTTTTCCTGATTCTTTTTCTGTGGAGAGATCTTGTACACCACCTGCTGGCACAGAAGTTCACAGGGAAAGAAACATCAATGAAGAAAATTGCTCTCAAGCCCTTGTGCATCCTCGAGATGGATCTCAGGTTGATATGTCAGGCCTACCTGTGCAAACACAAACTGCTTATCCTTTTTATATGCCGGAAGGTATGATGTCGGCGCAACTGTACCAAAAAAACCTGCATGATATGCAAAATCATGCGGCAATGATGTCACAGTATGGACATTTTCATCATTGCCCTCCCAATGTAAGTGGGGTGGCGTCTTATCCTTATTACCCTATGAATATATGTTTACAACCTGGTCAAATGCCAACTAGCACTACTCATATTCATTCATGGCCATCTTTTGGGAATTCATCTTCCAATGAAGCAAAATCGAACAAATTTGATAGAAGAGAGGCAGCACTGATTAAATTTAGGCAGAAAAGGAAAGAACGCTGTTTTGATAAGAAGATTAGGTATGTTAATAGGAAACGGCTTGCAGAGAGGAGGCCTCGTGTTCGGGGTCAGTTTGTGAGAAAGGTAAATGGTGTCAATGTAGATCTTAATGGACAACCTGCATCTGTTGATGATGTCGAGGATGAAGACGAGGAGGAGGAACTACTATCAAGGGATTCCTCTCATGAGGATGATGGTTCAGGATATTAG 3348 44.0 MQVNQTAIPAIGSSSRVRQQFLFSVLKCCLSVRNLAKIHAQIVVSGFAQKNYILVNLLSLYISFGSLGSAQKVFEDIRTPSTTVWNQIIRGHARSKTPQESIELFKRMTVAEVEADGFTYSFLLSACVRSRLFREGEQIHGRVLANGYWSNLYVRTNLINLYANGGGRGDFDLKRARYMFDEMPDSNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVQTWTTMVAGLAQNGHCKLALSLFNQMRRAGVELDQVALVAALSACAELGDLTLGKWIHRYVERTWRSRHFPVLVSLNNALMHMYASCGVMDLAYKVFEEMPQRNTVSWSSIITGFAKQGCGEEAIRVFQLMLCSGQNEVRPDEITFIGVLTACSHAGLIIDGIRVFQSMHKTFGVIPQIEHYGCMVDLLSRAGLLSEALRLIESMPMKPNNAVWGALLSGCRIHKNDEIASHVAKQLAFEIDPSKQAAGYFMLLANVYAADKRWRDTAIVRQNMLDIGVKKPSGRSWIEINGVVCDFVAGDETHKDVSLIYEMLGNITSQARMESCKSETISEALVGSGLAVMDCKELNLNEDCGGCGSGGKNGGDGFIDRSKVRILLCDNDSKSSEEVFKLLLKCSYQVISVSSARQVIDALNAEGPEIDIILSEVDLPMAKGMKMLKYITRDKELRRIPVIMMSTQDEVPIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILNYEFDMVASDPSDANTNSTTLFSDDTDDKSRRSTNPDMAIAATHQEDESGIAAALVEPPAVHTVKHQPDVPGISERRTGQPSSCPRKSELKIGESSAFFTYVKSRAVKNKAVDVEDNAKRLLLDENHQETSHRAAHLPPIQENGEALESHSQGDEFPSSSFPDSFSVERSCTPPAGTEVHRERNINEENCSQALVHPRDGSQVDMSGLPVQTQTAYPFYMPEGMMSAQLYQKNLHDMQNHAAMMSQYGHFHHCPPNVSGVASYPYYPMNICLQPGQMPTSTTHIHSWPSFGNSSSNEAKSNKFDRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKVNGVNVDLNGQPASVDDVEDEDEEEELLSRDSSHEDDGSGY 1115
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27017923 27025766 - ClCG04G012090.2 Cla04g01184 271412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01184 1115 Pfam PPR repeat family 187 220 IPR002885 -
Cla04g01184 1115 MobiDBLite consensus disorder prediction 1080 1115 - -
Cla04g01184 1115 MobiDBLite consensus disorder prediction 738 760 - -
Cla04g01184 1115 TIGRFAM PPR: pentatricopeptide repeat domain 221 253 IPR002885 -
Cla04g01184 1115 TIGRFAM PPR: pentatricopeptide repeat domain 191 219 IPR002885 -
Cla04g01184 1115 TIGRFAM PPR: pentatricopeptide repeat domain 325 354 IPR002885 -
Cla04g01184 1115 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 323 357 IPR002885 -
Cla04g01184 1115 Gene3D Tetratricopeptide repeat domain 169 282 IPR011990 GO:0005515
Cla04g01184 1115 Gene3D Tetratricopeptide repeat domain 35 168 IPR011990 GO:0005515
Cla04g01184 1115 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 81 115 IPR002885 -
Cla04g01184 1115 Pfam E motif 443 508 IPR046848 -
Cla04g01184 1115 MobiDBLite consensus disorder prediction 871 912 - -
Cla04g01184 1115 Gene3D Tetratricopeptide repeat domain 356 525 IPR011990 GO:0005515
Cla04g01184 1115 Gene3D Tetratricopeptide repeat domain 283 355 IPR011990 GO:0005515
Cla04g01184 1115 SMART REC_2 593 708 IPR001789 GO:0000160
Cla04g01184 1115 Gene3D - 593 804 - -
Cla04g01184 1115 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 116 150 IPR002885 -
Cla04g01184 1115 MobiDBLite consensus disorder prediction 790 814 - -
Cla04g01184 1115 MobiDBLite consensus disorder prediction 878 897 - -
Cla04g01184 1115 MobiDBLite consensus disorder prediction 1088 1104 - -
Cla04g01184 1115 PANTHER OS09G0411600 PROTEIN 13 538 - -
Cla04g01184 1115 Pfam PPR repeat 118 147 IPR002885 -
Cla04g01184 1115 Pfam PPR repeat 297 323 IPR002885 -
Cla04g01184 1115 Pfam PPR repeat 221 250 IPR002885 -
Cla04g01184 1115 Pfam PPR repeat 84 109 IPR002885 -
Cla04g01184 1115 Pfam PPR repeat 325 354 IPR002885 -
Cla04g01184 1115 Pfam PPR repeat 400 425 IPR002885 -
Cla04g01184 1115 Pfam CCT motif 1032 1074 IPR010402 GO:0005515
Cla04g01184 1115 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 187 221 IPR002885 -
Cla04g01184 1115 SUPERFAMILY CheY-like 591 719 IPR011006 -
Cla04g01184 1115 ProSiteProfiles Response regulatory domain profile. 594 712 IPR001789 GO:0000160
Cla04g01184 1115 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 13 538 - -
Cla04g01184 1115 Pfam Response regulator receiver domain 595 706 IPR001789 GO:0000160
Cla04g01184 1115 ProSiteProfiles CCT domain profile. 1032 1074 IPR010402 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00859 Cla-Chr4:23598226 Cla04g01184 Cla-Chr4:27017923 1.41E-18 dispersed
Cla04g01184 Cla-Chr4:27017923 Cla09g02091 Cla-Chr9:38444666 1.01E-17 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60948 PF00072 Response_reg 2.30E-16 CL0304 Cla TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01184 - K12127 cmo:103488102 999.579