Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01185 ATGGCTGTTGCTTCGTTATGTCAATCCACTATGCAATCCAAGGTCAGTGGGTTTATCGGAGGTCTCACTTTTCAGAAACCACCTCTCTCTCAACCTTCATCTCTTACCTTTTCGAGGAGGAGGTTCAGAAATGTGGTGAAAGCTTCATCTCGGGTTGATAAATACTCAAAATCTGATATCATCGTCTCTCCCTCAATCCTCTCTGCTAACTTTGCCAAATTGGGAGAGCAGGTCAAAGCAGTGGAACTGGCAGGTTGTGATTGGATTCATGTTGATGTAATGGATGGCCGTTTTGTTCCAAATATCACAATTGGACCTCTTGTCGTTGATGCTCTACGCCCTGTGACAGATCTTCCTTTAGATGTGCATTTGATGATTGTGGAGCCTGAGCAGCGTGTGCCAGACTTTATAAAGGCTGGTGCCGATATTGTCAGTGTTCATTGTGAGCAATCTTCCACAATCCATCTGCACCGCACCGTTAATCAAATAAAAAGTCTTGGAGCTAAAGCTGGAGTGGTTCTAAATCCTGCTACTTCACTCAGCACAATTGAATATGTCCTTGACGTTGTTGATTTGGTCTTAATTATGTCGGTAAATCCTGGTTTTGGTGGGCAAAGCTTTATTGAGAGCCAAGTAAAGAAAATCTCAGATTTAAGAAGATTATGTGCTGAAAAGGTTTACAAACCTATTGGCAATTCATTTGCTTTGTTGCAGGGAGTTAACCCATGGATCGAGGTGGACGGTGGAGTCGGTCCAGCCAATGCATACAAGGTAATTGAGGCTGGAGCCAATGCTTTAGTTGCAGGTTCTGCTGTTTTTGGAGCTAAAGATTATGCTGAGGCCATAAAAGGAATCAAAACAAGCAAAAGGCCGGAGGCAGTTCCAGTATGA 891 43.43 MAVASLCQSTMQSKVSGFIGGLTFQKPPLSQPSSLTFSRRRFRNVVKASSRVDKYSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATSLSTIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRLCAEKVYKPIGNSFALLQGVNPWIEVDGGVGPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPEAVPV 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27026449 27030318 - ClCG04G012110.1 Cla04g01185 271413

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01185 296 CDD RPE 61 286 IPR000056 GO:0005975|GO:0016857
Cla04g01185 296 TIGRFAM rpe: ribulose-phosphate 3-epimerase 62 286 IPR026019 GO:0004750|GO:0006098
Cla04g01185 296 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 1. 89 103 IPR000056 GO:0005975|GO:0016857
Cla04g01185 296 Hamap Ribulose-phosphate 3-epimerase [rpe]. 59 288 IPR026019 GO:0004750|GO:0006098
Cla04g01185 296 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 2. 193 215 IPR000056 GO:0005975|GO:0016857
Cla04g01185 296 PANTHER - 16 286 - -
Cla04g01185 296 PANTHER RIBULOSE-5-PHOSPHATE-3-EPIMERASE 16 286 IPR000056 GO:0005975|GO:0016857
Cla04g01185 296 SUPERFAMILY Ribulose-phoshate binding barrel 55 289 IPR011060 -
Cla04g01185 296 Pfam Ribulose-phosphate 3 epimerase family 62 273 IPR000056 GO:0005975|GO:0016857
Cla04g01185 296 Gene3D Aldolase class I 50 292 IPR013785 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01185 K01783 rpe, RPE; ribulose-phosphate 3-epimerase [EC:5.1.3.1] - csv:101219871 531.176
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01185 Cla-Chr4:27026449 Cla11g00670 Cla-Chr11:7809034 2.01E-31 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g576 Blo04g00777 Blo16g00182 . . . Bpe13g00298 Bma06g00168 . Cmo13g01200 . . . . . . Cpe20g00011 . . . . . . . . . . . . . . . Cone2ag0833 Cone16ag0181 . . . Csa01g00566 Chy12g01528 Cme12g01976 . . Bda11g01705 Bda14g00858 . Bpe15g00597 Bma03g00837 . Sed08g2085 . . Cma13g01146 . Car13g00975 . . . Bhi08g01141 Tan05g2423 Cmetu12g1896 Lac10g0094 Hepe07g2496 . . Cla04g01185 Cam04g1241 Cec01g1753 Cco01g1799 Clacu04g1270 Cmu04g1249 Cre01g1542 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004286 3 1 2 4 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla04g01185 Cla_Chr04 FPKM 5.126126 4.454249 8.217525 6.618109 4.195082 3.983812 6.203537 9.191036 8.668154 11.598891