Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01186 ATGAACCGTACATTCAATTCATACCCAGATGAAAATTATGCAAATGTTAGGAGATTGATGAGGCAGACTGAGGATGATGATCACAAGAACCTATCGGACAAGGATTCTCACTGTGATTTGAAGAGCAACCACGAATTGAAATGTGGGTTCAGTTCGATTCGAGTAATGGGTATGTTTGTGGTTTTGATGATGTTCATTTCTGTGATATTTTCGGTCTCTGTGGTTCTTAGAGATCCACCATCGGATGCTGTAATTGAAGGTTCAGATGTGTGGATTCCTCAGTGGAACTCTGACCCAGGTACTGGATTCTTGAACTTCTTGGAAATTAGTATGTGCTTTTTGACACTATCTTCAAGCTCTGTGTATGAGACATTGCGTTTAGATTCTAAGGTTGGAGATCTTCCTACGGTTATACAGCCAGTTGATAAACTGCTTAGTGGCCTTCTTTCTGCCAAACATGGGGTTGATTCTTGTCTCAGTAGGTACAATTCAGTTGCTTATCAACACAAGCTGGCTTACGAACCCTCTTCTTACTTAATCTCCAAATTGCGGAGTTATGAAGATCTTCATAAGCGTTGTGGAGTTCATACTGAATCTTACAACAAAACTTTGGAGCAGCTAAAGTCTAACGGCAGTAGCAGCTCCTCAGATTGTAGATATGTTGTTTGGATTTCCTTCAGTGGATTAGGGAATAGAATACTAACCCTCGCTTCGACGTTTCTTTATGCTCTCCTCACAAATCGTGTTCTTCTTGTTGACCCTGGAACTGACATGGCTGATCTCTTCTGTGAACCATTTCCTGAGGTTTCCTGGTTTCTTCCCCAAGATTTCCCATTAAAAGATGAGTTCAGCAAATTCAACCAGAACTCTACTAATTGCTATGGGAAAATAATGAAGAATAGCATGACCCCAGATTCAAGTGGAATGATCTTGCCAGCTGTAGTTTATCTTCATTTGGTCCATGATTATGATGCTGATGATAAGCTTTTCTTCTGTGATCAAGACCAAGCTCTTCTGCAGCAATCTCCTTGGCTTGTTATGAAAACAGACAACTATTTTGTCCCATCTCTCTTTTTGATCCCATCATTTGAGAAAGAACTTAATGATCTTTTCCCAAATAAAGATACAGTTTTCCACTTCTTGGGTCGATATCTGTTTCACCCCGTGAATTCGGTTTGGGGTCTGATTACAAGATATTATCAGGCTTACTTGGCTAGAGCTAGCGAAAGAATAGGCATTCAGATTAGAGTGTTTGATACAGGGACTGGACCTTTTCAACACATCCTGGATCAGGTTCTGGACTGTACCCTGAAGGAGAATCTGTTGCCACAAACCGAGAGGCAAACGAATGTTGTTGCTCCAGCTAGTAATCAAAAGGCAAAGGCTGTGTTGATAACTTCCTTGAGCGCTGGTTACTTCGAGAAGTTGAGAGATATTTACTGGGAGAATCCGACGGTAACGGGAGAGAGAATTAGTTTCTTCCAACCAAGTCATGAGGAACACCAGCAAACGGAGAAAAGTATACATAACCAGAAGGCATTGGCAGAGATGTATTTGTTAAGTACAACTGATGTATTGGTCACCAGTTCATGGTCGACCTTCGGATACGTGGCTCAGGGTCTTGGGGGTCTGAAACCATGGATATTATACAAACCTGAAAATCGTACTGCGCCCGATCCACCTTGCCGTCGAGCCATGTCCATGGAGCCCTGTTTCCATGCACCTCCTTTCTATGACTGCAAGGCTAAGAAAGGAGTGGACACTGGTAAACTTGTTCCTCATGTGAGGCATTGCGAGGACATGGCCTGGGGACTCAAGTTGGTTGATCAATATGATTGA 1839 42.36 MNRTFNSYPDENYANVRRLMRQTEDDDHKNLSDKDSHCDLKSNHELKCGFSSIRVMGMFVVLMMFISVIFSVSVVLRDPPSDAVIEGSDVWIPQWNSDPGTGFLNFLEISMCFLTLSSSSVYETLRLDSKVGDLPTVIQPVDKLLSGLLSAKHGVDSCLSRYNSVAYQHKLAYEPSSYLISKLRSYEDLHKRCGVHTESYNKTLEQLKSNGSSSSSDCRYVVWISFSGLGNRILTLASTFLYALLTNRVLLVDPGTDMADLFCEPFPEVSWFLPQDFPLKDEFSKFNQNSTNCYGKIMKNSMTPDSSGMILPAVVYLHLVHDYDADDKLFFCDQDQALLQQSPWLVMKTDNYFVPSLFLIPSFEKELNDLFPNKDTVFHFLGRYLFHPVNSVWGLITRYYQAYLARASERIGIQIRVFDTGTGPFQHILDQVLDCTLKENLLPQTERQTNVVAPASNQKAKAVLITSLSAGYFEKLRDIYWENPTVTGERISFFQPSHEEHQQTEKSIHNQKALAEMYLLSTTDVLVTSSWSTFGYVAQGLGGLKPWILYKPENRTAPDPPCRRAMSMEPCFHAPPFYDCKAKKGVDTGKLVPHVRHCEDMAWGLKLVDQYD 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27032300 27035174 + ClCG04G012120.2 Cla04g01186 271414

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01186 612 Pfam Xyloglucan fucosyltransferase 137 581 IPR004938 GO:0008107|GO:0016020|GO:0042546
Cla04g01186 612 PANTHER FUCOSYLTRANSFERASE 2-RELATED 139 610 IPR004938 GO:0008107|GO:0016020|GO:0042546
Cla04g01186 612 PANTHER FUCOSYLTRANSFERASE 2-RELATED 20 86 IPR004938 GO:0008107|GO:0016020|GO:0042546
Cla04g01186 612 Gene3D - 395 559 - -
Cla04g01186 612 Gene3D - 215 268 - -
Cla04g01186 612 PANTHER 2-ALPHA-L-FUCOSYLTRANSFERASE, PUTATIVE-RELATED 139 610 - -
Cla04g01186 612 PANTHER 2-ALPHA-L-FUCOSYLTRANSFERASE, PUTATIVE-RELATED 20 86 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01186 K13681 FUT; xyloglucan fucosyltransferase [EC:2.4.1.-] - csv:101219153 1098.19
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01186 Cla-Chr4:27032300 Cla07g01024 Cla-Chr7:26648898 2.53E-173 dispersed
Cla04g01186 Cla-Chr4:27032300 Cla05g02423 Cla-Chr5:35747848 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g575 . . . . . . . . Cmo13g01199 . . . . . . Cpe20g00012 . . . . . . . . . . . . . . . Cone2ag0834 Cone16ag0180 . . Lsi02g00086 Csa01g00565 Chy12g01529 Cme12g01977 . . . . . . . . . . . Cma13g01145 . Car13g00974 . . . . . . . . . . Cla04g01186 Cam04g1243 Cec01g1754 Cco01g1800 Clacu04g1271 Cmu04g1250 Cre01g1543 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla05g02423 . 100 565 Xyloglucan Fucosyltransferase1 AT1G14080 57.3 2.0e-158 556.2
Cla04g01186 . 140 610 Xyloglucan Fucosyltransferase1 AT1G14080 54.8 5.2e-151 531.6
Cla05g02423 . 80 566 Xyloglucan Fucosyltransferase1 AT1G14100 58.9 1.9e-166 582.8
Cla04g01186 . 142 610 Xyloglucan Fucosyltransferase1 AT1G14100 57.9 1.2e-160 563.5
Cla07g01024 . 56 543 Xyloglucan Fucosyltransferase1 AT1G14100 50.2 5.2e-140 495.0
Cla05g02423 . 101 570 Xyloglucan Fucosyltransferase1 AT1G14110 53.5 7.6e-138 487.6
Cla04g01186 . 114 612 Xyloglucan Fucosyltransferase1 AT1G14110 50.6 5.1e-134 474.9
Cla05g01076 . 1 514 Xyloglucan Fucosyltransferase1 AT1G49710 62.1 2.2e-183 639.0
Cla02g00602 . 1 551 Xyloglucan Fucosyltransferase1 AT1G49710 58.1 9.6e-179 623.6
Cla08g00876 . 20 404 Xyloglucan Fucosyltransferase1 AT1G71990 67.7 7.8e-160 560.5
Cla05g02423 . 58 539 Xyloglucan Fucosyltransferase1 AT1G74420 50.5 2.7e-126 449.5
Cla05g02423 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 55.1 9.6e-180 627.1
Cla04g01186 . 98 611 Xyloglucan Fucosyltransferase1 AT2G03210 57.0 5.3e-170 594.7
Cla05g02423 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 64.2 5.7e-201 697.6
Cla04g01186 . 142 608 Xyloglucan Fucosyltransferase1 AT2G03220 66.2 1.6e-187 652.9
Cla05g02423 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 54.9 4.3e-155 545.0
Cla04g01186 . 116 611 Xyloglucan Fucosyltransferase1 AT2G15350 50.3 1.2e-144 510.4
Cla05g02423 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 54.4 1.3e-149 526.9
Cla05g02423 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 55.1 5.5e-153 538.1
Cla04g01186 . 142 610 Xyloglucan Fucosyltransferase1 AT2G15390 52.5 8.8e-143 504.2
Cla05g01076 . 1 514 Xyloglucan Fucosyltransferase1 AT3G19280 63.0 7.9e-186 647.1
Cla02g00602 . 1 551 Xyloglucan Fucosyltransferase1 AT3G19280 57.5 1.8e-177 619.4
Cla05g02423 . 58 539 Xyloglucan Fucosyltransferase1 AT1G74420 50.5 2.7e-126 449.5
Cla05g02423 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 55.1 9.6e-180 627.1
Cla04g01186 . 98 611 Xyloglucan Fucosyltransferase1 AT2G03210 57.0 5.3e-170 594.7
Cla05g02423 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 64.2 5.7e-201 697.6
Cla04g01186 . 142 608 Xyloglucan Fucosyltransferase1 AT2G03220 66.2 1.6e-187 652.9
Cla05g02423 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 55.1 9.6e-180 627.1
Cla04g01186 . 98 611 Xyloglucan Fucosyltransferase1 AT2G03210 57.0 5.3e-170 594.7
Cla05g02423 . 58 539 Xyloglucan Fucosyltransferase1 AT1G74420 50.5 2.7e-126 449.5
Cla05g02423 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 55.1 5.5e-153 538.1
Cla04g01186 . 142 610 Xyloglucan Fucosyltransferase1 AT2G15390 52.5 8.8e-143 504.2
Cla05g02423 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 54.4 1.3e-149 526.9
Cla05g02423 . 100 565 Xyloglucan Fucosyltransferase1 AT1G14080 57.3 2.0e-158 556.2
Cla04g01186 . 140 610 Xyloglucan Fucosyltransferase1 AT1G14080 54.8 5.2e-151 531.6
Cla05g02423 . 80 566 Xyloglucan Fucosyltransferase1 AT1G14100 58.9 1.9e-166 582.8
Cla04g01186 . 142 610 Xyloglucan Fucosyltransferase1 AT1G14100 57.9 1.2e-160 563.5
Cla07g01024 . 56 543 Xyloglucan Fucosyltransferase1 AT1G14100 50.2 5.2e-140 495.0
Cla05g02423 . 101 570 Xyloglucan Fucosyltransferase1 AT1G14110 53.5 7.6e-138 487.6
Cla04g01186 . 114 612 Xyloglucan Fucosyltransferase1 AT1G14110 50.6 5.1e-134 474.9
Cla05g02423 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 54.9 4.3e-155 545.0
Cla04g01186 . 116 611 Xyloglucan Fucosyltransferase1 AT2G15350 50.3 1.2e-144 510.4
Cla05g01076 . 1 514 Xyloglucan Fucosyltransferase1 AT3G19280 63.0 7.9e-186 647.1
Cla02g00602 . 1 551 Xyloglucan Fucosyltransferase1 AT3G19280 57.5 1.8e-177 619.4
Cla05g01076 . 1 514 Xyloglucan Fucosyltransferase1 AT1G49710 62.1 2.2e-183 639.0
Cla02g00602 . 1 551 Xyloglucan Fucosyltransferase1 AT1G49710 58.1 9.6e-179 623.6
Cla08g00876 . 20 404 Xyloglucan Fucosyltransferase1 AT1G71990 67.7 7.8e-160 560.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012658 0 0 0 0 0 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla04g01186 Cla_Chr04 FPKM 4.613771 4.254596 7.334015 7.4877 5.782516 4.964876 6.099488 6.209076 7.233727 6.970987