Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01190 ATGGGATTTGTTGGGATATTGGTAATGGGATTTTTGTGTTTGTGCTCTTTGGTTCATGGCTATGGTGGACGCTGGATCAATGACGCTCATGCTACTTTCTATGGCGGCCCCGATGCTTCTGGTACTTTGGGTACCGCGGACTATGGGATTAAAACGACGGCGTTGAGTCCAGCATTGTTCGACAATGGGTTGAGTTGTGGGGCTTGTTTTGAGGTTAGGTGTGTGAATAACCAAAAATGCCTTCCCGGCTCCGTCGTGGTCACCGCCACCAACTTCTGTCCTCCCGGCGGTTGGTGCGCCCCTTCCCTCCACCATTTTGATCTCTCTCAACCTGCCTTCCAAACCATCGCTCAATCCATCGCCGGGGTCGTCCCCGTTGCTTATCGAAGGGTTAAATGTGCAAGAAAGGGAGGAATAAAGTTCAGAATAGAAGGGAATCCAAACTTCAATTTGGTGCTAATAAGCAATGTGGGAGGCGCTGGAGACGTTCATGCAGTTTACATCAAAGGGGGAAGGAATGGTTGGAAGGCAATGGTTAGAAATTGGGGTCAAAATTGGCAAAGCAATGATAATCTTGTAGGACAGTCCCTTTCTTTTAAGGCTTCGGCCGTTGTCTTCCGGCCATGCACGTCGAGATCGAGGTTTCTCTCGGGGTCTTCGGGAAAGTTTAACAGAGCTTTGTCTGTTAAGCCAACAACTTCTTCAGTTCTTAATTCTTTCAAAGTTGAGGCCAAGAAAGGAGAGTGGTTGCCAGGTTTGCCATCCCCAGCTTACCTTGATGGAAGTCTGCCAGGTGACAATGGGTTTGATCCTCTGGGACTTGCAGAGGATCCTGAAAACTTGAGGTGGTATGTGCAAGCCGAGCTCGTGAATGGCCGATGGGCGATGCTCGGAGTTGCAGGTATGGTATTGCCTGAAGTCTTCACAAATTTCGGAATCATCAATGTACCGAAATGGTACGATGCAGGGAAAGCTGAGTATTTCGCATCGTCATCGACTCTCTTTGTGATTGAGTTCATTCTGTTCCATTATGTGGAAATCAGAAGATGGCAAGATATAAAGAACCCAGGAAGTGTAAACCAAGATCCCATTTTCAAGCAATACAGCTTGCCACCAAACGATGTTGGATATCCAGGGGGAATTTTCAACCCACTCAACTTTGAGCCAACTCTCGAGGCCAAGGAGAAGGAGATTGCTAATGGAAGACTGGCAATGTTGGCATTCTTGGGATTCATCGTTCAACACAATGTGACTGGAAAAGGTCCATTTGACAACTTCTTGCAGCACATTTCAGACCCGTGGCACAACACTATAGTTCAAACACTAAGGGGGTAG 1335 47.49 MGFVGILVMGFLCLCSLVHGYGGRWINDAHATFYGGPDASGTLGTADYGIKTTALSPALFDNGLSCGACFEVRCVNNQKCLPGSVVVTATNFCPPGGWCAPSLHHFDLSQPAFQTIAQSIAGVVPVAYRRVKCARKGGIKFRIEGNPNFNLVLISNVGGAGDVHAVYIKGGRNGWKAMVRNWGQNWQSNDNLVGQSLSFKASAVVFRPCTSRSRFLSGSSGKFNRALSVKPTTSSVLNSFKVEAKKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMVLPEVFTNFGIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIVQTLRG 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27061578 27066086 + ClCG04G012160.2 Cla04g01190 271418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01190 444 Pfam Expansin C-terminal domain 139 201 IPR007117 -
Cla04g01190 444 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 35 138 IPR007112 -
Cla04g01190 444 Gene3D - 136 210 IPR036749 -
Cla04g01190 444 Pfam Lytic transglycolase 52 128 IPR009009 -
Cla04g01190 444 SUPERFAMILY Chlorophyll a-b binding protein 246 442 - -
Cla04g01190 444 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 198 444 - -
Cla04g01190 444 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 148 242 IPR007117 -
Cla04g01190 444 Gene3D - 16 134 IPR036908 -
Cla04g01190 444 PRINTS Expansin signature 96 113 IPR002963 GO:0009664
Cla04g01190 444 PRINTS Expansin signature 47 61 IPR002963 GO:0009664
Cla04g01190 444 PRINTS Expansin signature 85 95 IPR002963 GO:0009664
Cla04g01190 444 PRINTS Expansin signature 137 149 IPR002963 GO:0009664
Cla04g01190 444 PRINTS Expansin signature 184 205 IPR002963 GO:0009664
Cla04g01190 444 PRINTS Expansin signature 149 170 IPR002963 GO:0009664
Cla04g01190 444 PRINTS Expansin signature 113 126 IPR002963 GO:0009664
Cla04g01190 444 Gene3D Chlorophyll a/b binding protein domain 256 435 - -
Cla04g01190 444 SUPERFAMILY Barwin-like endoglucanases 25 156 IPR036908 -
Cla04g01190 444 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 198 444 IPR001344 GO:0009765|GO:0016020
Cla04g01190 444 SMART dpbb_1 52 128 IPR007112 -
Cla04g01190 444 Pfam Chlorophyll A-B binding protein 256 415 IPR022796 -
Cla04g01190 444 PRINTS Expansin/Lol pI family signature 121 137 IPR007118 GO:0005576
Cla04g01190 444 PRINTS Expansin/Lol pI family signature 34 52 IPR007118 GO:0005576
Cla04g01190 444 PRINTS Expansin/Lol pI family signature 175 189 IPR007118 GO:0005576
Cla04g01190 444 PRINTS Expansin/Lol pI family signature 56 74 IPR007118 GO:0005576
Cla04g01190 444 SUPERFAMILY PHL pollen allergen 135 201 IPR036749 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla04g01190 Cla06g01586 CCT
Cla04g01190 Cla06g01586 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01190 Cla-Chr4:27061578 Cla07g00480 Cla-Chr7:6785317 2.93E-76 dispersed
Cla03g01160 Cla-Chr3:24201698 Cla04g01190 Cla-Chr4:27061578 1.37E-47 transposed
Cla03g01434 Cla-Chr3:29922828 Cla04g01190 Cla-Chr4:27061578 6.51E-62 transposed
Cla07g01141 Cla-Chr7:28312860 Cla04g01190 Cla-Chr4:27061578 9.10E-07 transposed
Cla08g00704 Cla-Chr8:19293961 Cla04g01190 Cla-Chr4:27061578 6.19E-26 transposed
Cla08g01570 Cla-Chr8:28351845 Cla04g01190 Cla-Chr4:27061578 4.32E-66 transposed
Cla09g02009 Cla-Chr9:37651864 Cla04g01190 Cla-Chr4:27061578 1.18E-46 transposed
Cla04g01190 Cla-Chr4:27061578 Cla05g02431 Cla-Chr5:35815273 2.51E-86 wgd
Cla04g01190 Cla-Chr4:27061578 Cla06g01586 Cla-Chr6:29404223 9.41E-74 wgd
Cla04g01190 Cla-Chr4:27061578 Cla09g01772 Cla-Chr9:35114897 5.59E-88 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01190 K08910 - csv:101218675 488.419