Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01191 ATGGATGCTGACCTTTCGTGCGATCTTGTAAGCAGAGCATTGAATGAATGCCTTTGGCTTTGGCTTTCCTGTTTTGCTGCCCGCCATTCTTCCTTTCCGCCAGTCCCTTCCCTTTTAACTTCCTCCCTCTTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATTCACTTCCCCCTTCTCGGTGCGATTCATATCGTACCTTTACTTTCTTTTCCTTTTTCCTCACTTGGGGTTAAGCTGAAAATAAAGAAATTAGAGAGCACTGGTAGCAGGCAAGTGACTTACTCTAAGAGAAGAAATGGGATTATGAAGAAAGCAAGGGAGCTAGCTATACTCTGCGATATTGATATCGTTCTCCTCATGTTTTCGCCAAGTGGAAAGCCGGCGCTATATGAAGGTGAACGCAGCAACATCGAGGAGGTCATTACAAAATTTGCTGAATTGACTCCACAGGAGAGGGCAAAAAGGAAAATGGAAAGCCTTGAAGTGCTAAAGAAAACATTCAAGAAGTTAGACCACGATGTTAACATAAATGATTTTGTGGGTTCAAGCTCTCAAGATTTTGAGGAATTGACCAATGAAGTTGCCGTATTGCGAGATCAGATTGGCAAAGCGCATAAGAGACTGAGCTATTGGAGGAATCCTGATAGTATCAACAATATAGAGCAGCTTCAGCAGATGGAAGATCTAATAAGGGAGTCCCTAAACCAGACACGTCTACACAAGGAAAATTTAAGAAGACATCAACTACTCTCACAGGACTTCACGGGCCAGTATCCGGGTGGTGGAATGTCCTTACCTTTGTTAATGGACGAAATGCAAGGCACTCAACCTCTGTTATGGCTTCCCAGCTATAGCACCCAACAGATCACCTTACCAAATGAGCCTAGCTTTCTGCAACCAGGTGATGTTGAATGCTCATTTCCAAGCTATCCCAGTTTCTTCAACCCTGGGAACAAAACTGAAGCTGGAATCTCTGGTCAAGTTGATAGCATGCCACAAGGTGATGGGGCTTTAAATGAATTAAGTGGAACTTCTTGCTCAACACTGCAACTTGGTGATCAATATCCATACCCTACATGTGATGGTTCCAGCTTCCAAGATGAAAAGAAACTGAAAATTGAGATGGAGATGAACTTGCATGCAACTTGTGTGGACACTCAACTAAATGGCAAGTTGGAGCTCTCTAGATCTCTATATGATGATGACCAGTATCCTTGGGCTGCTATACCAGGGCCTTGTAGCATTCCAATGTACCAAAGCAATGCATATCACCATGCAATACCATACCTGCAACTCCGAGCATCGCCCATCGGCCATTCACGAGCTCGGCTTGCACATACCACCTCAACTGGGGATGGCAAACCTGGCAACCACTCTCCTTTCTTGGCCTCAACTTTGAAAGAATTAAGAACTGAAGAAGTTGTTGGCTTAACAGACAAAGCTCTGTTAAACTTTCCCGAAGACCCCGAGAGAAACCTCGATCTCGACGTGCATGGCCGGAAGACAACGGCCGAAGCCTGGGTCGTGACAGTTACCATTTTTTGA 1554 44.53 MDADLSCDLVSRALNECLWLWLSCFAARHSSFPPVPSLLTSSLFLFFFFFFFFFFFIHFPLLGAIHIVPLLSFPFSSLGVKLKIKKLESTGSRQVTYSKRRNGIMKKARELAILCDIDIVLLMFSPSGKPALYEGERSNIEEVITKFAELTPQERAKRKMESLEVLKKTFKKLDHDVNINDFVGSSSQDFEELTNEVAVLRDQIGKAHKRLSYWRNPDSINNIEQLQQMEDLIRESLNQTRLHKENLRRHQLLSQDFTGQYPGGGMSLPLLMDEMQGTQPLLWLPSYSTQQITLPNEPSFLQPGDVECSFPSYPSFFNPGNKTEAGISGQVDSMPQGDGALNELSGTSCSTLQLGDQYPYPTCDGSSFQDEKKLKIEMEMNLHATCVDTQLNGKLELSRSLYDDDQYPWAAIPGPCSIPMYQSNAYHHAIPYLQLRASPIGHSRARLAHTTSTGDGKPGNHSPFLASTLKELRTEEVVGLTDKALLNFPEDPERNLDLDVHGRKTTAEAWVVTVTIF 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27065147 27070793 - ClCG04G012180.2 Cla04g01191 271419

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01191 517 Coils Coil 190 210 - -
Cla04g01191 517 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 87 130 IPR002100 GO:0003677|GO:0046983
Cla04g01191 517 PANTHER SERUM RESPONSE FACTOR HOMOLOG 80 428 - -
Cla04g01191 517 ProSiteProfiles MADS-box domain profile. 81 137 IPR002100 GO:0003677|GO:0046983
Cla04g01191 517 SMART madsneu2 80 136 IPR002100 GO:0003677|GO:0046983
Cla04g01191 517 SUPERFAMILY SRF-like 81 171 IPR036879 GO:0003677|GO:0046983
Cla04g01191 517 Gene3D - 90 172 IPR036879 GO:0003677|GO:0046983
Cla04g01191 517 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 80 428 - -
Cla04g01191 517 PRINTS MADS domain signature 99 114 IPR002100 GO:0003677|GO:0046983
Cla04g01191 517 PRINTS MADS domain signature 79 99 IPR002100 GO:0003677|GO:0046983
Cla04g01191 517 PRINTS MADS domain signature 114 135 IPR002100 GO:0003677|GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01191 - - - csv:101220182 655.981
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01191 Cla-Chr4:27065147 Cla07g00897 Cla-Chr7:24703483 1.34E-24 dispersed
Cla04g01191 Cla-Chr4:27065147 Cla05g02432 Cla-Chr5:35817899 8.72E-100 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g565 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00080 Csa01g00558 Chy12g01534 Cme12g01984 . . . . . . . . Sed01g2340 . . . . Car13g00970 . . . Bhi08g01149 Tan05g2432 Cmetu12g1892 . Hepe07g2502 . . Cla04g01191 . . Cco01g1805 Clacu04g1277 . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012582 0 5 0 0 0 1 2 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60950 PF00319 SRF-TF 1.90E-19 No_clan Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla04g01191 Cla_Chr04 FPKM 3.345782 3.99206 2.906279 3.301429 1.168937 0.938812 1.574564 5.453104 4.994862 6.197875