Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla04g01194 | ATGAAAAAAGAACCAAATGAAATGGTCCACGTGGAAGGCGGCAGCCAAACTTATGAAAGTGTGTGTGAATTAGGGTATCGCATCGGGTGCACCAACTTTTGGTACAACCCAGAATCAGAAATGGAAGAAAATCTTTGTGTCCACATAAACTTGTGGCTCAAAATCAAATTCACTCGCTTACGTGGCACCCCACCCCTTCTTTTAACGGATTCATCCTTCAACTTCCTTCCCCTGCTCTCAACTCTCCCAAAAATCCCTTTCTTTCAACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTAAGAAATTCAATTATGTTGGATTCTAAAGATCCTACTATTAAGCTTTTTGGCCGTAATATTCCACTTTCCGAAGACGGGGAACCTCCGGCGATTCTTTCCCGCGACTTCCCTTCTCAGAAACATGCAGAACCAATAAAGGATGATGCTGTTGATGATCCTGAGAAACCTGTTGATGATTCAGATGATTCAAGAAATCTAGAGAGAGAGGAAGAGGCTAGCGTGAATCCCAAAACGCCATCTATAGATGAAGAAACTGCGACGCCTACTAATGGAGAACAAGAGAGTGAGAAACCTAATTCAGAGAAAACCCTAAAGAAGCCTGATAAATTGCTTCCATGTCCTCGTTGCAAAAGTATGGAGACAAAGTTCTGTTACTACAACAATTACAATGTAAATCAACCTCGCCATTTTTGTAAAGCTTGTCAAAGATACTGGACCGCCGGTGGGACTATGAGGAACGTACCGGTAGGAGCTGGTCGTCGGAAGAGCAAAAACTCTGCTTCTTATTACCGTCACATCACGATCTCTGAGGCTCTTGAAGCTGCTCGAATTGAGGCTCCAAATGGAACCCACAAACCAAAATTCATTGGCAACAATGGCAGAGTTCTCAGTTTCAATTTGGATGCACCGAGTTCTGATGCTGTGGTGGGCTCTGTTTTAAACCTTGCAGAAAACAGAGTTTTGAGTAATGGGGTAAAGAAGTTTGAAGAGAAAGGATCTGAAGGATGTGATAAAAGCTCGAGTTTGTCTTCTATGGCAGTTCAAAGTTCATCAGAATTGAAAATCAATGGCTTCCCTTCTCAGATTTCATGTCTTTCTGGAGTTCCATGGCCTTTTATTTGGAATTCATCAGTTCCACCACCAGCTTTTGGCCCTCCAGGATTTCCCTTGTCTTTTTTTCCAGCAGCTCCTTGGAACTGTGGGGTTCCAGGACCATGGAACACTCCATGGTTTTCACCACAACCTGAAAAATCTGTGCGTTCTGACTCTGAAGCTTCTTCAACACTGGGAAAGCATCAAAGAGACAATGAAACGGCCAAGGAAGATGCCATTTCAAGTAAAGAAGAGGGTGTTAAGCAGAGAAATGGACATGTCTTAACCCCAAAGACTTTAAGGATTGATGACCCAAGTGACGCTGCAAAAAGTTCCATATGGGCAACACTTGGGATAAAGAATGAATCAATCACTGGAGGAAAAAATCTGTTCAAAACCTTTCATCCCAAAGGCCATGAGAAGGTTCATGTTGCTGAAGCCTCATCAGTTTTGCAGGCAAATCCTGCAGCCTTGTCGAGATCTCTCGTCTTTCACGAGAGCTCTTGA | 1629 | 42.97 | MKKEPNEMVHVEGGSQTYESVCELGYRIGCTNFWYNPESEMEENLCVHINLWLKIKFTRLRGTPPLLLTDSSFNFLPLLSTLPKIPFFQLLLLLLLLLLLLLLRNSIMLDSKDPTIKLFGRNIPLSEDGEPPAILSRDFPSQKHAEPIKDDAVDDPEKPVDDSDDSRNLEREEEASVNPKTPSIDEETATPTNGEQESEKPNSEKTLKKPDKLLPCPRCKSMETKFCYYNNYNVNQPRHFCKACQRYWTAGGTMRNVPVGAGRRKSKNSASYYRHITISEALEAARIEAPNGTHKPKFIGNNGRVLSFNLDAPSSDAVVGSVLNLAENRVLSNGVKKFEEKGSEGCDKSSSLSSMAVQSSSELKINGFPSQISCLSGVPWPFIWNSSVPPPAFGPPGFPLSFFPAAPWNCGVPGPWNTPWFSPQPEKSVRSDSEASSTLGKHQRDNETAKEDAISSKEEGVKQRNGHVLTPKTLRIDDPSDAAKSSIWATLGIKNESITGGKNLFKTFHPKGHEKVHVAEASSVLQANPAALSRSLVFHESS | 542 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 27094213 | 27096896 | - | ClCG04G012210.2 | Cla04g01194 | 271422 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla04g01194 | 542 | MobiDBLite | consensus disorder prediction | 181 | 197 | - | - | |
| Cla04g01194 | 542 | MobiDBLite | consensus disorder prediction | 142 | 180 | - | - | |
| Cla04g01194 | 542 | Pfam | Dof domain, zinc finger | 212 | 268 | IPR003851 | GO:0003677|GO:0006355 | |
| Cla04g01194 | 542 | ProSitePatterns | Zinc finger Dof-type signature. | 216 | 252 | IPR003851 | GO:0003677|GO:0006355 | |
| Cla04g01194 | 542 | MobiDBLite | consensus disorder prediction | 421 | 436 | - | - | |
| Cla04g01194 | 542 | MobiDBLite | consensus disorder prediction | 419 | 477 | - | - | |
| Cla04g01194 | 542 | MobiDBLite | consensus disorder prediction | 198 | 214 | - | - | |
| Cla04g01194 | 542 | PANTHER | CYCLIC DOF FACTOR 2 | 108 | 541 | IPR045174 | GO:0003700|GO:0006355 | |
| Cla04g01194 | 542 | MobiDBLite | consensus disorder prediction | 437 | 465 | - | - | |
| Cla04g01194 | 542 | ProSiteProfiles | Zinc finger Dof-type profile. | 214 | 268 | IPR003851 | GO:0003677|GO:0006355 | |
| Cla04g01194 | 542 | PANTHER | CYCLIC DOF FACTOR 1 | 108 | 541 | - | - | |
| Cla04g01194 | 542 | MobiDBLite | consensus disorder prediction | 129 | 214 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cla04g01194 | Cla06g01588 | CCT | |
| Cla04g01194 | Cla06g01588 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla04g01194 | Cla-Chr4:27094213 | Cla10g01453 | Cla-Chr10:29720622 | 6.45E-100 | dispersed | |
| Cla04g01194 | Cla-Chr4:27094213 | Cla05g02435 | Cla-Chr5:35837765 | 3.60E-84 | wgd | |
| Cla04g01194 | Cla-Chr4:27094213 | Cla06g01588 | Cla-Chr6:29416844 | 2.36E-127 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 60951 | PF02701 | zf-Dof | 5.20E-32 | No_clan | Cla | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla04g01194 | - | - | csv:101219706 | 754.592 |