Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01196 ATGGGTGATCACATGGTTTTGTGTGTGGACCGCCTCATTACACCCGAAAGTTTGCAGTCGCTGCAGGGAACTACTGCTCCAGGATCTTCTTTAGAATCTTCATCTTCTCAAAATTCAGAGCCACCTGTTTGTGCTATTGCTGTTGAAGATGTGGATGAACATGATGGATCCGAAGAAGACCCACTTATACAGACAGTTGAATGTCGAATATGTCAGGAAGAGGACAGTATTAAGAATTTGGAGGTTCCTTGTGCTTGCAGTGGCAGCTTGAAGTATGCTCACAGGAAATGTGTCCAGCGATGGTGCAATGAGAAGGGAGATATAACTTGCGAAATCTGTCATCAGTCAAACCAAGAAGTTAGTAGAAAAAAACAATCTTTTTATTTGGAAGCTACAATTGGCTGTACCTTTGTATATGGTGAATCATTGGTATTATCAAGCGTAATTATCAGCCTGGTTATACCTTGCCCGTACCTCCCCCTCACCCTGAAGATGCCACCATTGACTGAAGGTTGGGCAGTCTCTGAAACTGCTTTAGATTTGCATGATCCACGACTTTTAGCTATGGCAGCAGCAGAACGCCACTTTCTTGAGGCAGAATATGATGAATATGCAGATGCCAGTGCGAACGGAACAGCATTTTGCCGATCTGCTGCTCTGATTTTGTTGGCTCTTTTACTGTTGAGGCATGCTCTATACCTTACAAATGGTGATGGAGAAGATGATGCATACACTTTCTTCTCGCTTTTATTGCTGCGAGCTGCCGGGTTTCTTCTTCCTTGCTACATAATGGCATGGGCCATCAGCATACTACAGCGTCGAAGACAAAGACAGGAAGCTGCAGCGCTTGCAGCAACTGAAGTTGCATTTATGCTGCAGGCAGCACAAAGTCAGAGCCTTCAGTTTACTATCGCTCCAGGGCCTGTGGTTACTCCTCATCAAGAACCACTCCAATAA 957 44.83 MGDHMVLCVDRLITPESLQSLQGTTAPGSSLESSSSQNSEPPVCAIAVEDVDEHDGSEEDPLIQTVECRICQEEDSIKNLEVPCACSGSLKYAHRKCVQRWCNEKGDITCEICHQSNQEVSRKKQSFYLEATIGCTFVYGESLVLSSVIISLVIPCPYLPLTLKMPPLTEGWAVSETALDLHDPRLLAMAAAERHFLEAEYDEYADASANGTAFCRSAALILLALLLLRHALYLTNGDGEDDAYTFFSLLLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATEVAFMLQAAQSQSLQFTIAPGPVVTPHQEPLQ 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27120786 27124334 + ClCG04G012230.2 Cla04g01196 271424

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01196 318 PANTHER OS11G0600700 PROTEIN 1 303 - -
Cla04g01196 318 CDD RING_CH-C4HC3_MARCH 68 114 - -
Cla04g01196 318 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 118 IPR013083 -
Cla04g01196 318 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 303 IPR033275 -
Cla04g01196 318 ProSiteProfiles Zinc finger RING-CH-type profile. 60 120 IPR011016 GO:0008270
Cla04g01196 318 SUPERFAMILY RING/U-box 65 116 - -
Cla04g01196 318 MobiDBLite consensus disorder prediction 19 40 - -
Cla04g01196 318 Pfam RING-variant domain 68 113 IPR011016 GO:0008270
Cla04g01196 318 Pfam Protein of unknown function (DUF3675) 169 268 IPR022143 -
Cla04g01196 318 SMART ringv_2 67 114 IPR011016 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01196 - - - csv:101217964 451.055
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01196 Cla-Chr4:27120786 Cla11g00700 Cla-Chr11:8790546 4.10E-91 dispersed
Cla02g00612 Cla-Chr2:6722504 Cla04g01196 Cla-Chr4:27120786 1.52E-07 transposed
Cla04g01196 Cla-Chr4:27120786 Cla05g02442 Cla-Chr5:35877776 1.02E-86 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g554 Blo04g00770 . . . . . . . Cmo13g01189 . . . . . . Cpe20g00017 . . . . . . . . . . . . . . . Cone2ag0845 Cone16ag0170 . . Lsi02g00075 Csa01g00552 Chy12g01538 Cme12g01990 . . . Bda14g00852 . Bpe15g00601 Bma03g00831 . . . . Cma13g01135 . Car13g00966 . . . Bhi08g01164 Tan05g2438 . Lac10g0079 Hepe07g2507 . . Cla04g01196 Cam04g1255 Cec01g1766 Cco01g1813 Clacu04g1285 Cmu04g1261 Cre01g1554 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000419 4 6 4 4 3 3 6 3 3 3 3 3 6 3 3 6 3 6 6 3 3 3 3 3 3 3 3 12 6 2 122
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla04g01196 Cla_Chr04 FPKM 62.186104 70.954208 46.629478 48.614754 33.531296 35.080269 31.736774 27.333916 25.830893 26.370306