Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01201 ATGATCAGATGCCGGTCTCTTAGAACCGTCAAGCAAATCCATGCTTTTACATTCAAAACAGGCTTAAATTCCGATCCATTAGTCGCCGGAAAGCTTCTTCTACATTGTGCAGTCACACTTCCTGATTCTGTTCACTATGCTCGACGCCTCTTCCTCGACATTCGAAATCCAGATGTCTTCATGTACAACACTCTCATCCGTGGCCTTTCCGATTCTGACACTCCCTCCAATGCCCTTCAACTGTTTGTTGAAATGCGTCGCAAAACCATGGCTCTACCTGATAGCTTCTCTTTTGCTTTTCTGCTCAAAGCCGCTGCTAATTGCAGGGCTCTGACCAATGGGTTGCAATTGCATTGCCAAGCTATTGGATATGGCCTGGATACCCATCTTTTTGTTGGGACAACGCTGATTAGCATGTATGCTGAATGTGCAAGTTTGGCCTTTGCACGCAAGGTGTTTGATGAAATGATTGAACCAAATATTGTTGCTTGGAATGCCATTTTTGCTGCGTGTTTTAGGTGCGAGGACGTTAAGGATGCTGAGCAAGTGTTTCTTTGTATGCCTATTAGAAACTTGACCTCGTGGAACATCATGCTTGCAGGGGAATTGCGGCAGGAAGGGATGAGACCAAATGAGGTAAGTCTCACAGGTGTGCTTTCTGCATGTGCACAAGCTGGGGCATATGAGTTTGGAAGAATCCTACATGGGTTTGTTGAAAAATCTGGCTTTCTGCAGATTATTTCAGTGAATAATGCACTGATTGATACTTACTCTAAATGTGGGAATTTGGATATGGCTCGATTGGTCTTTGATAATATGCTGGAAAGGAGCGCCGTCTCTTGGACAGCCATGATTGCTGGGCTGGCAATGCATGGCTACGGGGAGAAAGCAATCAGATTATTTAATGAGATGGAAGAGTCTAATATTAAGCCCGACGGTATTACCTTCATATCCATCTTGTATGCCTGTAGCCATGCCGGATTAGTTGATTTGGGATGTTCTTATTTTTCTAAGATGGTAAATACTTATGGTATTGAACCCGTAGTTGAACACTATGGTTGCATAGTTGATCTTTATGGTCGAGCTGGTAAGCTGCAGCAAGCTTTTGACTTTGTGTGTCAAATGCCAATTTCACCGAATGATATTGTCTGGAGGACTCTTCTTGGAGCTTGTAGCATTCATGGTAACTTGAATCTGGCAAGGCAAGTAAAGAGACGACTCTCCGAACTTGACCCCGAAAATTCTGGAGATCATGTTCTTTTGTCAAACATTTATGCTGTTGCAGGGAAATGGAAGGATGTTGCCACTTTAAGAAGATCAATGACTCAGCATAGACTTAAGAAAACTCCTGGTTGGAGCATGATTGAAGTTGATAGAATCACGTACAGTTTTGTTGCAGGAGAAAAGCAAAATGACATGGCAGTAGAGGCACATCAAAAGCTAAGGGAGATAATGTCAAGACTAAGGACAGAAGGAGGTTATGTGCCAGAAGTTGGAAGTGCGTTGCATGATATAGAAATGGAAGAAAAGGAAGACTCTGTTTCACAGCACAGTGAGAAACTAGCAGTAGCTTTTGGGATGGCGAGGCTGCGGAGAGGAAGAGCCATAAGAGTGGTGAAGAATTTAAGAATTTGCAGGGACTGTCACACTGTAATGAAGCTAATTTCGAAGGTCTATGAAGTGGAAATTGTGAAACGAATCAGAAAACTGAAAACACTGCTTGATCAATGGAAGCGCAATAGATCACTGGCCCTTGCAAAAATCCAGATAATACCAAATACCAACCAGAAGATTGAGCTCACAAATGGGTATAAAATGATGCTGCCGCTGCCTTTATTGACCTTGGCGCTTCGCGGGGTTGCCGATATTTGCTCCTACGCTCAACCAACCAAACCAAGCTTGCAAATCTACAATCCCCAATTTCATTCTCAACTTCGGTGTAATCCCCACAAAACCCCATTTCCAGCTGCTCATTACTCCAAACCCTCTTCAGAGGCGACATCCTCGACCCCATCAAAGGCTAGTAACTGGCAGTGGAAATTCAAAGACAATCTGATAAACATCTATTATGAGGAATATGAAAGCCAGAGTGCTGATCCACCTCAAGATATTCTCATGATACCGACGATTTCTGATGTTAGCACTGTGGAGGAGTGGAGAATAGTGGCTAGAGAACTTGTGCAAAAGGATAGTAAAGTCAATTGGCGTGCTACTATCGTTGATTGGCCTGGTCTGGGTTTCTCTGATAGACCAAAGATGGATTACAATGCTGACGTTATGGAGAAGTTCTTAGTGGACTTGATCAATGCTCCTAATGGTCCATTGAGCAGCTCAAAAGATGACTTGGTGGTATTTGGAGGTGGCCATGCGGCTGCACTAACAATTCGTGCAGCAAATAGGGGTTTGGTGAAGCCAAGGGGCATTGCCGCAGTTGCACCTACTTGGGCTGGACCACTTCCTATTGTATTTGGTCGAGATTCCAACATGGAATCAAGGTACGGATTTCTTAGAGGCACATTAAGAGCACCTGCTGTTGGTTGGATGATGTATAATATACTCGTCAGCAATGAAAATGCTATTGAATCACAGTATAAATCTCATGTCTATGCCAACCCGGACAATGTTACTCGAGAAATCATTGAAAGCAGATATGCACTGACTAAAAGAGACGGTGCTCGTTATGTGCCTGCTGCTTTCTTGACCGGTCTTCTCGATCCCGTTAAATCCCGAGAAGAGTTTGTCGAACTGTTTGCAGGTTTGGATGGAAAGATACCAGTTTTGGTTGTATCAACAGAAAAATCTCCAAAGAGGTCGAAGGCAGAAATGGAAGCTCTACGAGGAGCCAAAGGGGTAAGCAAATTTGTGGAGTTGCCAGGTGCCCTTCTGCCACAAGAAGAGTATCCAACAGTAGTTGCAGATGAGCTCCATCAGTTCTTGAAGGAGAATTTTGAAGCTGCAGATTGA 2964 43.76 MIRCRSLRTVKQIHAFTFKTGLNSDPLVAGKLLLHCAVTLPDSVHYARRLFLDIRNPDVFMYNTLIRGLSDSDTPSNALQLFVEMRRKTMALPDSFSFAFLLKAAANCRALTNGLQLHCQAIGYGLDTHLFVGTTLISMYAECASLAFARKVFDEMIEPNIVAWNAIFAACFRCEDVKDAEQVFLCMPIRNLTSWNIMLAGELRQEGMRPNEVSLTGVLSACAQAGAYEFGRILHGFVEKSGFLQIISVNNALIDTYSKCGNLDMARLVFDNMLERSAVSWTAMIAGLAMHGYGEKAIRLFNEMEESNIKPDGITFISILYACSHAGLVDLGCSYFSKMVNTYGIEPVVEHYGCIVDLYGRAGKLQQAFDFVCQMPISPNDIVWRTLLGACSIHGNLNLARQVKRRLSELDPENSGDHVLLSNIYAVAGKWKDVATLRRSMTQHRLKKTPGWSMIEVDRITYSFVAGEKQNDMAVEAHQKLREIMSRLRTEGGYVPEVGSALHDIEMEEKEDSVSQHSEKLAVAFGMARLRRGRAIRVVKNLRICRDCHTVMKLISKVYEVEIVKRIRKLKTLLDQWKRNRSLALAKIQIIPNTNQKIELTNGYKMMLPLPLLTLALRGVADICSYAQPTKPSLQIYNPQFHSQLRCNPHKTPFPAAHYSKPSSEATSSTPSKASNWQWKFKDNLINIYYEEYESQSADPPQDILMIPTISDVSTVEEWRIVARELVQKDSKVNWRATIVDWPGLGFSDRPKMDYNADVMEKFLVDLINAPNGPLSSSKDDLVVFGGGHAAALTIRAANRGLVKPRGIAAVAPTWAGPLPIVFGRDSNMESRYGFLRGTLRAPAVGWMMYNILVSNENAIESQYKSHVYANPDNVTREIIESRYALTKRDGARYVPAAFLTGLLDPVKSREEFVELFAGLDGKIPVLVVSTEKSPKRSKAEMEALRGAKGVSKFVELPGALLPQEEYPTVVADELHQFLKENFEAAD 987
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27179719 27188969 - ClCG04G012280.2 Cla04g01201 271429

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01201 987 Pfam PPR repeat family 277 323 IPR002885 -
Cla04g01201 987 Pfam PPR repeat family 57 106 IPR002885 -
Cla04g01201 987 PANTHER OS01G0913400 PROTEIN-RELATED 4 201 - -
Cla04g01201 987 PANTHER - 4 201 - -
Cla04g01201 987 Pfam PPR repeat 251 276 IPR002885 -
Cla04g01201 987 Pfam PPR repeat 351 375 IPR002885 -
Cla04g01201 987 Pfam PPR repeat 162 188 IPR002885 -
Cla04g01201 987 Gene3D Tetratricopeptide repeat domain 340 527 IPR011990 GO:0005515
Cla04g01201 987 PANTHER - 202 525 - -
Cla04g01201 987 Gene3D alpha/beta hydrolase 680 985 IPR029058 -
Cla04g01201 987 Pfam Alpha/beta hydrolase family 719 973 IPR000073 -
Cla04g01201 987 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 160 194 IPR002885 -
Cla04g01201 987 TIGRFAM PPR: pentatricopeptide repeat domain 251 276 IPR002885 -
Cla04g01201 987 TIGRFAM PPR: pentatricopeptide repeat domain 279 312 IPR002885 -
Cla04g01201 987 Pfam DYW family of nucleic acid deaminases 493 566 IPR032867 GO:0008270
Cla04g01201 987 MobiDBLite consensus disorder prediction 654 673 - -
Cla04g01201 987 Pfam E motif 394 456 IPR046848 -
Cla04g01201 987 SUPERFAMILY alpha/beta-Hydrolases 686 981 IPR029058 -
Cla04g01201 987 Gene3D Tetratricopeptide repeat domain 201 339 IPR011990 GO:0005515
Cla04g01201 987 Gene3D Tetratricopeptide repeat domain 73 200 IPR011990 GO:0005515
Cla04g01201 987 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 58 92 IPR002885 -
Cla04g01201 987 PANTHER OS01G0913400 PROTEIN-RELATED 202 525 - -
Cla04g01201 987 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 277 311 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01201 - - - csv:101219230 969.148
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01201 Cla-Chr4:27179719 Cla09g02091 Cla-Chr9:38444666 7.60E-158 dispersed
Cla04g01201 Cla-Chr4:27179719 Cla05g02440 Cla-Chr5:35862331 7.08E-151 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g549 . . . . . . . . Cmo13g01185 . . . . . . . . . . . . . . . . . . . . . . Cone2ag0848 . . . Lsi02g00070 Csa01g00546 Chy12g01543 Cme12g01996 . . . . . . Bma03g00827 . . . . Cma13g01131 . . . . . Bhi08g01172 . . . Hepe07g2512 . . Cla04g01201 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012580 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla04g01201 Cla_Chr04 FPKM 3.626667 2.823052 5.091099 3.985549 2.068011 1.525897 0.978551 1.9427 1.319791 1.802002