Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01202 TTGTTCGAGAGTACGGTAAAGATGGTGATGGTGGGAGGGGAAGCACTAGAGAAAGCGGTTAAAGAAGTAAGGGAGAAGCTGAAAGTGATTGAAGAACATGGAGTGAAAGAGTTGTTGGGAGATGATGGAAGTAAAGCATTTGCGAATGGAGAAGAAATGGGGTTAGTAGACATAGTAATGTGGTCAGTTCTTGGAGCTTACAAGATCCACGAAGAGGTTTTGGGGGTCAAAATTATAGATGAAAAGGAGACCCCAAGAGTGTACTCATGGCTCAACACCCTCATAAACCACCCCCTTGCCAATGCCATATTGCCTTCTAAACAAAAGGTCATGGGTCTTCTTAATTACTTGTTTGAGGGTCTATTTTTATTAATGAAGACAGAAGGAGAAGCACAAGAGAAAGCCATTAATGAAGTGAAAGAGAAGTTGAAAGTTCTTGAAGAACAGGGGTTGAAGAGTTTGCTGGCAGAGGGAAGTACTCCATTTGTGAATGGAGATGAACTTGGATATTTGGACATAGTGATGTTGACAGTGCTTGGACTGTACAAGATTCATGAAGAGTTTTTTGGAGTCAAAATTGTGGAAGAAGAGAAGATCCCAATTGTGTTTTCATGGTTGAACAGATTGATAGAGCATCCTATTGCAAAGGAGGTAGCTCCTCCCAAAGAAAAGTTGTTCGATGGTCTACTTTTATCAATGAAGACAGAAGGGGAAGCACAAGAGAAAGCCATTAAAGACGTGAAAGAGAAGCTCAAAGTTGTTGAAGAACAGGGGCTGAAGAGTTTGCTGGTAGAGGGAAGTCGATTTGTGAATGGAGATGAACTTGGATATTTGGACATAGGGATGTTGACAGTGCTTGGAAGGTACAAGATTTATGAAGAGTTTTTTGGAGTGAAGATTGTGGAAGAAGAGGAGATCCCAATTGTTTTCTCATGGTTGAATAGATTGATAGAGCATCCAATTGCGAAGGAGGGAGCTGCTCCCAAAGAAAAGGTTTTGGGGCTTCTTCACATCGTCAGACAAAGATTTCTACACTCCCCTGCTGCTGCTTAA 1053 41.6 LFESTVKMVMVGGEALEKAVKEVREKLKVIEEHGVKELLGDDGSKAFANGEEMGLVDIVMWSVLGAYKIHEEVLGVKIIDEKETPRVYSWLNTLINHPLANAILPSKQKVMGLLNYLFEGLFLLMKTEGEAQEKAINEVKEKLKVLEEQGLKSLLAEGSTPFVNGDELGYLDIVMLTVLGLYKIHEEFFGVKIVEEEKIPIVFSWLNRLIEHPIAKEVAPPKEKLFDGLLLSMKTEGEAQEKAIKDVKEKLKVVEEQGLKSLLVEGSRFVNGDELGYLDIGMLTVLGRYKIYEEFFGVKIVEEEEIPIVFSWLNRLIEHPIAKEGAAPKEKVLGLLHIVRQRFLHSPAAA 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27190439 27201118 - ClCG04G012300.1 Cla04g01202 271430

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01202 350 CDD GST_C_Tau 117 227 IPR045074 GO:0004364|GO:0006749
Cla04g01202 350 Coils Coil 13 33 - -
Cla04g01202 350 CDD GST_C_Tau 223 336 IPR045074 GO:0004364|GO:0006749
Cla04g01202 350 PANTHER GLUTATHIONE S-TRANSFERASE 226 345 - -
Cla04g01202 350 PANTHER GLUTATHIONE S-TRANSFERASE 6 118 - -
Cla04g01202 350 Gene3D - 1 118 - -
Cla04g01202 350 Gene3D - 229 346 - -
Cla04g01202 350 Gene3D - 119 228 - -
Cla04g01202 350 SUPERFAMILY GST C-terminal domain-like 118 230 IPR036282 -
Cla04g01202 350 SUPERFAMILY GST C-terminal domain-like 225 343 IPR036282 -
Cla04g01202 350 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 80 237 IPR010987 -
Cla04g01202 350 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 6 118 IPR045073 -
Cla04g01202 350 Pfam Glutathione S-transferase, C-terminal domain 238 320 IPR004046 -
Cla04g01202 350 Pfam Glutathione S-transferase, C-terminal domain 125 213 IPR004046 -
Cla04g01202 350 Pfam Glutathione S-transferase, C-terminal domain 15 98 IPR004046 -
Cla04g01202 350 SUPERFAMILY GST C-terminal domain-like 6 119 IPR036282 -
Cla04g01202 350 Coils Coil 237 257 - -
Cla04g01202 350 CDD GST_C_Tau 1 117 IPR045074 GO:0004364|GO:0006749
Cla04g01202 350 PANTHER GLUTATHIONE S-TRANSFERASE 118 226 - -
Cla04g01202 350 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 226 345 IPR045073 -
Cla04g01202 350 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 118 226 IPR045073 -
Cla04g01202 350 Coils Coil 129 149 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01202 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - cmos:111431396 308.145
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01202 Cla-Chr4:27190439 Cla05g00390 Cla-Chr5:3521607 5.97E-06 dispersed
Cla04g01202 Cla-Chr4:27190439 Cla05g02445 Cla-Chr5:35895016 1.31E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g547 . . . . . . . . Cmo13g01183 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00544 Chy12g01545 . . . . Bda14g00849 . . Bma03g00824 . Sed08g2065 . . Cma13g01129 . . . . . Bhi08g01175 Tan05g2447 Cmetu10g1222 Lac10g0073 Hepe07g2513 . . Cla04g01202 Cam04g1264 Cec01g1774 Cco01g1822 Clacu04g1293 Cmu04g1269 Cre01g1562 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001282 1 2 2 3 1 3 0 4 4 3 1 4 2 5 2 1 4 1 1 2 3 3 1 6 4 1 2 3 2 4 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla04g01202 Cla_Chr04 FPKM 31.678226 38.178574 1.241442 2.075752 3.30153 2.493992 3.213959 70.015564 71.901443 68.700768