Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01204 ATGGCGACGTCAGGACAGTGGCTGGAGAAGGCGTTGGACGATCTCTGCAAGAAGATGGAAACTGGTTGGGGTCTCGATAAGGATATGATTTCGGGCTTGGTCTCGTACTGTGAGCTCGCCCAGCCCCAAGACGCTAAAGAGCAAACTCCTGAGACTCCTTCCGCTTCTTCAAAGAATCAAATGAATTTTATTGCAATCCAATCCTTCGTAAACAAAACACTATTATCCCCACGTAGGTTGGTTTCCTCTGTCGCGACTGTAGACAATGCGTCCAATTTTTCCTTCACCAAAACTGAAACTTTCCCTCTTTTCGATCCTTTAGAGTTGCTCAATGATTTTGTAAAATCGAGAAAATGCTCTTTGAGAAACACGAAAGTTCTACACGCAAAGTTACTCCGAGCAACTCTTCTTCATTCCAATATCTATGTTTCAAATTCTTTGCTAGATTGTTACTCAAAGTCTAACGCAATGGACCATGCACGCAAACTGTTTGATACAATTCTCCACCCAAATGTCATTTCTTGGAATATCATTATCTCGGGTTTCAACCACAAGTTCTTACATTTGGACTCGTGGAGAACATTTTGTAGGATGCATTTCCTTGGTTTTGAACCTAGTGAGATAACATATGGGAGCGTTTTATCTGCTTGTGCTGCCATTCAAGCCCCAATGTTTGGTAAGCAGGTTTATTCACTTGCTGTGAGAAATGGGTTCTTTGTTAGTGGTTATGTTCGAGCTGGAATGATTGATTTATTTGCAAAAGATTTTAGTTTTCTGGATGCTCTAAGGGTGTTTCACGATGTTGATTGTGAGAATGTGGTGTGTTGGAATGCTATTGTCTCCGCAGCTGTAAGAAATGGGGAGAATTTGATGGCTCTGGATCTTTTCAACGCAATGTGTCGTGGGTTACTGGAGCCTAATAGTTTCACCTTTTCCAGTGTTCTAACTGCATGTGCTGCACTTGGAGATCTTGAATCTGGGAAAAGAGTTCAAGGGAGAGTGATTAAATGTAGTGGAGAAGATGTTTTTGTTGAGACAGCCCTTATTGATTTGTATGCCAAGTGTGGAGATACGGATGAAGCTGTTAAGATATTCTTGCGAATGCCCATTCGCAATGTGGTCTCTTGGACTGCTATAATATCTGGCTTTGTGCAAAATAATGATTATTTAATGGCCCTCAAGTTTTTTGAAGATATGAGAAAAGTGGGAGAGGAAATTAATAGCTATACGCTTACTAGTGTGTTAACTGCATGTTCTAATCCAGCCATGAAAAAAGAAGCGACCCAACTTCACTCCTGGATTCTAAAAACTGGTTTTTCTTCACATGCAGTGGTGGCGGCTGCTTTAATTAATATGTATTCAAAAACAGGTGCAATTGATCTTTCATTGAGGGTTTTCAGAGAGATGGATGTCCAAAGGAATCTCAGTTCTTGGACAGCTATGATAACTTCATTTGCACAGAATAATGATAAAGAGAAAGCAAGTGAATTGTTCCGAAAAATGTTAAGGGAAAGTGTGGGACCAGATACATTTTGTACTTCCAGTGTCTTGAGTGTGACTGACTGTATTACTTTTGGGAGGCAGATGCACTGCTACACACTTAAAACTGGATTAATATTTGATGTTTCTGTTGGCAGTTCTCTTTTTACGATGTATTCCAAATGTGGCCATCTAAAGGAAGCTTTTCAAGTTTTTGAAAACATGCCAGAGAAAGACAATGTTTCGTGGGCATCAATGATTTCCTGTTTCTTAGAACATGGCTATGCAAAAGAGGCCATTCAATTATTTAAAAAAATGTTGTTTGAAGAATATGTACCTGATCATATGACTTTAAGTGTAGTCCTAACTGCATGTTCTGTCCTTCGTTCTATTCAAATAGGCAGAGAAATTCATGGTTACTCTGTTCGTGAGGGACTTGGCAAAGACGTTGGAAGCTCGCTTGTGGCTATGTACTCGAAATGTGGCAACCTGGAATTGGCTAGGAGGGTGTTTGAAACATTGCCCCAGAAAGATCATATTGCATGCTCTTCATTGGTTTCAGGATATGCTCAACAAAAGTGCAATGAAGAGGCTCTTTTGCTATTCCGCGATCTGTTGGTGGCCGGCTTAGCCATCGATCCCTTCTCAATCTCATCCGTACTGGGAGCTATTGCTCTCCTAAATAGGCCTGCAATTGGGACTCAAATCCATGCACTCACTATGAAAGTAGGCTTGGAGAAGGATGTTTCTGTTGGGAGTTCGCTAGTAATGGTATATTCCAAATGTGGAAGTATAGAAGACTGCTGCAAAGCATTTGGGCAGATTGGAAAGCCTGATTTGATAGGCTGGACTGCCATGATTGTCAGTCATGCCCAACATGGGAAAGGTGCTGAAGCTTTATGTGTCTATGAACTTATGAAGAAAGAAGGATTCAAGCCTGATCCAGTCACCTTTGTTGGGGTTTTGTCTGCTTGTAGCCATAATGGTTTGGTCGATGAAGCCTATTTCCACCTTAATTCAATGGTGAAAGACTATGGTATACAGCCAGGATATCGACATTATGCGTGTATGGTAGATCTTCTTGGGCGGTGTGGGAAACTGAAAGAGGCAAAAGAACTGATTGACCATATGCCTATTGAACCTGACGCTCTCGTTTGGGGAACACTACTTGCTGCTTGTAAAGTACATGGAGATATTGAACTTGGAAAACTAGCAGCAAGAAAGGTGATGGAGTTGAAGCCAAGTGATACTGGTGCTTATGTCTCCCTTTCAAACATCTGTGCTGATATGGGCCTGTGGGAAGAGGTCCTGAACGTTAGAAGCCTAATGAAGGGAGCTGGAGTGACGAAAGAACCTGGTTGGAGCTTTCTTTTTCGTCATCATTTATCCAATACGGAGACGACGGAGGCTGCCTCTCTTCTTTCTTTGTTGGAAGAGTGCAATTTTAGGGAGGGGAAAAGGAATGTTCGTGTCTGGAAGCCTAATCCTGTTGATGGCTTTTCTTGTAAATCTTTCTTTAGACTATTGTTGGATCCCTCTCCGGTTAATGAGTCGATCTTTGATGATAGGCTCTGGATGATTAAGATATCGAAGAAAATTAAGTTCTTTACCTGCATAAACTCTGCACAGTTCGTGATGTGTGGAGATATATGTGTCATAACGGGTCAGGAAGCTGGGAAAAGTGTGATAGATGAGTATTTGCGGCTGCGAGGCCATGACCTCTGTAGCAAAACGTTGGATGTTCCAACTTCAACCTTACATGCCTATGTCAAGCCACCCTCCCATGAAGGTTCTTTTGGCGGATCCAAGAAACCTGTTAAAACACCAAAAACTATTTCTATCTCCAGTAAAGAGATAGAACCAAAGAAGGCTACTAGCTCTAGTAACGTTGAAAACCAGGTATCGTCAGACACACGCAATTCATCATCGTTTGGCAAAGGGAATCAAAGTTCTAGAAAGAAGAAAGCTACCAAAGTTGTTTCTCTGGCCGAGGCTGCTAAAGGATCGATTGTGTTCCAGCAAGGAAAACCATGTTCGTGCCAAGCTCGTCGTCATAGACTAGTGAGCAATTGTTTATCATGTGGCAAGATTGTATGTGAACAAGAGGGAGAAGGACCATGCAGTTTTTGCGGTTCGCTTGTGCTGAGAGAAGGGAGCACCTATGCTGGTATGGATGAAGGTTTTACCCCACTTTCAGATGCTGAAGCAGCAGCTGAAGCCTATGCAAAACGGTTAGTTGAATATGACAGAAACTCTGCTGCAAGAACATCTGTAATTGATGATCAAAGTGATTATTACCAGATTGAGGGTAATAGCTGGTTGTCTAACGAGGAAAAGGAACTTCTGAAAAAGAAACAAGAGGAGATTGAAGAGGCTGAACGAGCTAAACGAAACAAAGTGGTTGTAACCTTTGACTTGGTTGGCCGCAAGGTTCTTTTGAATGAAGATGATGCCTCTGAACTTGAATCACACAACAATATCTTGCGGCCACCAGATGAAAGAGAAGTGAACAGGATTAAACCAAACCCATCTCTTCAAATACATCCTGTGTTTCTAGATCCAGGCCCCAGAGAGAGAGAGAAATCCACCAAAGACAGAAACTCAAACAAAGCCGTAAGCAAAAAAGGCATTTGTCTGGAAATTACTGGAAGGGTGCAGCATGATAGCAATGAATTGAAGCATTTTATGATGGAAGATGATTTGGACACGTCATTCAATAGGAAAGCTTGGGAAGGGCCTTCCGTGAATCACCAAGCAGCAATTGCAGGACAATTATGA 4257 41.91 MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEQTPETPSASSKNQMNFIAIQSFVNKTLLSPRRLVSSVATVDNASNFSFTKTETFPLFDPLELLNDFVKSRKCSLRNTKVLHAKLLRATLLHSNIYVSNSLLDCYSKSNAMDHARKLFDTILHPNVISWNIIISGFNHKFLHLDSWRTFCRMHFLGFEPSEITYGSVLSACAAIQAPMFGKQVYSLAVRNGFFVSGYVRAGMIDLFAKDFSFLDALRVFHDVDCENVVCWNAIVSAAVRNGENLMALDLFNAMCRGLLEPNSFTFSSVLTACAALGDLESGKRVQGRVIKCSGEDVFVETALIDLYAKCGDTDEAVKIFLRMPIRNVVSWTAIISGFVQNNDYLMALKFFEDMRKVGEEINSYTLTSVLTACSNPAMKKEATQLHSWILKTGFSSHAVVAAALINMYSKTGAIDLSLRVFREMDVQRNLSSWTAMITSFAQNNDKEKASELFRKMLRESVGPDTFCTSSVLSVTDCITFGRQMHCYTLKTGLIFDVSVGSSLFTMYSKCGHLKEAFQVFENMPEKDNVSWASMISCFLEHGYAKEAIQLFKKMLFEEYVPDHMTLSVVLTACSVLRSIQIGREIHGYSVREGLGKDVGSSLVAMYSKCGNLELARRVFETLPQKDHIACSSLVSGYAQQKCNEEALLLFRDLLVAGLAIDPFSISSVLGAIALLNRPAIGTQIHALTMKVGLEKDVSVGSSLVMVYSKCGSIEDCCKAFGQIGKPDLIGWTAMIVSHAQHGKGAEALCVYELMKKEGFKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVKDYGIQPGYRHYACMVDLLGRCGKLKEAKELIDHMPIEPDALVWGTLLAACKVHGDIELGKLAARKVMELKPSDTGAYVSLSNICADMGLWEEVLNVRSLMKGAGVTKEPGWSFLFRHHLSNTETTEAASLLSLLEECNFREGKRNVRVWKPNPVDGFSCKSFFRLLLDPSPVNESIFDDRLWMIKISKKIKFFTCINSAQFVMCGDICVITGQEAGKSVIDEYLRLRGHDLCSKTLDVPTSTLHAYVKPPSHEGSFGGSKKPVKTPKTISISSKEIEPKKATSSSNVENQVSSDTRNSSSFGKGNQSSRKKKATKVVSLAEAAKGSIVFQQGKPCSCQARRHRLVSNCLSCGKIVCEQEGEGPCSFCGSLVLREGSTYAGMDEGFTPLSDAEAAAEAYAKRLVEYDRNSAARTSVIDDQSDYYQIEGNSWLSNEEKELLKKKQEEIEEAERAKRNKVVVTFDLVGRKVLLNEDDASELESHNNILRPPDEREVNRIKPNPSLQIHPVFLDPGPREREKSTKDRNSNKAVSKKGICLEITGRVQHDSNELKHFMMEDDLDTSFNRKAWEGPSVNHQAAIAGQL 1418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27210773 27217249 + ClCG04G012330.2 Cla04g01204 271432

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01204 1418 PANTHER OS07G0578800 PROTEIN-RELATED 740 949 IPR045215 GO:0003723|GO:0009451
Cla04g01204 1418 PANTHER OS07G0578800 PROTEIN-RELATED 522 640 IPR045215 GO:0003723|GO:0009451
Cla04g01204 1418 PANTHER OS07G0578800 PROTEIN-RELATED 627 739 IPR045215 GO:0003723|GO:0009451
Cla04g01204 1418 Coils Coil 1224 1244 - -
Cla04g01204 1418 Coils Coil 1268 1295 - -
Cla04g01204 1418 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 272 306 IPR002885 -
Cla04g01204 1418 PANTHER OS09G0413300 PROTEIN 427 520 - -
Cla04g01204 1418 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 372 406 IPR002885 -
Cla04g01204 1418 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 572 606 IPR002885 -
Cla04g01204 1418 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 341 371 IPR002885 -
Cla04g01204 1418 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 807 842 IPR002885 -
Cla04g01204 1418 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 772 806 IPR002885 -
Cla04g01204 1418 Pfam PPR repeat 674 702 IPR002885 -
Cla04g01204 1418 Pfam PPR repeat 477 505 IPR002885 -
Cla04g01204 1418 Pfam PPR repeat 847 870 IPR002885 -
Cla04g01204 1418 Pfam PPR repeat 145 165 IPR002885 -
Cla04g01204 1418 Pfam PPR repeat 448 469 IPR002885 -
Cla04g01204 1418 PANTHER OS09G0413300 PROTEIN 119 425 - -
Cla04g01204 1418 PANTHER OS09G0413300 PROTEIN 740 949 - -
Cla04g01204 1418 PANTHER OS09G0413300 PROTEIN 522 640 - -
Cla04g01204 1418 PANTHER OS09G0413300 PROTEIN 627 739 - -
Cla04g01204 1418 Gene3D Tetratricopeptide repeat domain 337 423 IPR011990 GO:0005515
Cla04g01204 1418 Gene3D Tetratricopeptide repeat domain 523 626 IPR011990 GO:0005515
Cla04g01204 1418 Gene3D Tetratricopeptide repeat domain 424 522 IPR011990 GO:0005515
Cla04g01204 1418 Gene3D Tetratricopeptide repeat domain 640 724 IPR011990 GO:0005515
Cla04g01204 1418 Gene3D Tetratricopeptide repeat domain 104 224 IPR011990 GO:0005515
Cla04g01204 1418 MobiDBLite consensus disorder prediction 1346 1364 - -
Cla04g01204 1418 PANTHER OS07G0578800 PROTEIN-RELATED 119 425 IPR045215 GO:0003723|GO:0009451
Cla04g01204 1418 PANTHER OS07G0578800 PROTEIN-RELATED 427 520 IPR045215 GO:0003723|GO:0009451
Cla04g01204 1418 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 474 508 IPR002885 -
Cla04g01204 1418 Gene3D Tetratricopeptide repeat domain 225 336 IPR011990 GO:0005515
Cla04g01204 1418 Pfam Putative zinc finger motif, C2HC5-type 1169 1209 IPR009349 GO:0005634|GO:0006355|GO:0008270
Cla04g01204 1418 MobiDBLite consensus disorder prediction 1101 1149 - -
Cla04g01204 1418 MobiDBLite consensus disorder prediction 1338 1365 - -
Cla04g01204 1418 TIGRFAM PPR: pentatricopeptide repeat domain 477 510 IPR002885 -
Cla04g01204 1418 TIGRFAM PPR: pentatricopeptide repeat domain 776 807 IPR002885 -
Cla04g01204 1418 TIGRFAM PPR: pentatricopeptide repeat domain 346 372 IPR002885 -
Cla04g01204 1418 TIGRFAM PPR: pentatricopeptide repeat domain 374 407 IPR002885 -
Cla04g01204 1418 TIGRFAM PPR: pentatricopeptide repeat domain 574 607 IPR002885 -
Cla04g01204 1418 MobiDBLite consensus disorder prediction 1085 1149 - -
Cla04g01204 1418 Pfam PPR repeat family 170 218 IPR002885 -
Cla04g01204 1418 Pfam PPR repeat family 771 819 IPR002885 -
Cla04g01204 1418 Pfam PPR repeat family 571 618 IPR002885 -
Cla04g01204 1418 Pfam PPR repeat family 272 319 IPR002885 -
Cla04g01204 1418 Pfam PPR repeat family 371 419 IPR002885 -
Cla04g01204 1418 Gene3D Tetratricopeptide repeat domain 770 909 IPR011990 GO:0005515
Cla04g01204 1418 Pfam E motif 889 949 IPR046848 -
Cla04g01204 1418 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 541 571 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01204 - - - bhj:120082449 1662.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01204 Cla-Chr4:27210773 Cla01g01547 Cla-Chr1:30110676 3.41E-82 dispersed
Cla08g01751 Cla-Chr8:29973449 Cla04g01204 Cla-Chr4:27210773 7.36E-26 dispersed
Cla10g00914 Cla-Chr10:21840091 Cla04g01204 Cla-Chr4:27210773 7.99E-19 dispersed
Cla04g01204 Cla-Chr4:27210773 Cla09g00659 Cla-Chr9:6258153 6.18E-43 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g545 . Blo16g00187 . . . Bpe13g00289 Bma06g00176 . Cmo13g01182 . . . . . . Cpe20g00022 . . . . . . . . . . . . . . . . . . . . Csa01g00539 Chy12g01549 . . . . . . . . . . . . Cma13g01128 . Car13g00963 . . . . . . . . . . Cla04g01204 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012059 0 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 2 1 1 1 0 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla04g01204 Cla_Chr04 FPKM 0.317292 0.260472 0.497555 0.35331 0.808973 0.216734 0.369106 0.810466 0.714011 0.525326