Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla04g01209 | ATGGAAGCTGGAAATGACCAACTTCAGTATCACCAAAACCATCGCTCAACAACTTCTTTTCCTCTCCAATTGTTAGAGAAGAAGGAATATGATAATAATCCCCAACCTCCCCTTGACATCATCTCTAAGAAGCCCTCTCCCAAGAGAACTTCTACTAAGGACCGCCACACCAAAGTGGACGGCCGCGGTCGTCGCACCCGAATGCCTGCTCTTTGTGCTGCTAGAGTTTTCCAGCTCACTCGTGAGCTCGGCCACAAGTCCGATGGCGAAACCATTGAATGGCTTCTTCAACAGGCGGAGCCTGCCGTTATCGCCGCCACCGGGACCGGTACTATTCCTGCAAACTTTAACTCTCTCAACACGTCGTTGAGAAGATCGGCCACAAGCATTTCTTTGCCATCTCAACTAAGATCCTCATCTTACTACCACCCCGGAGTGATGGGGTTCAACTCTGAAGCAATAACTAATAATATGACGCAACCAAAAGAAGATCATCACTATCTACACCAATCCACCACGGGCCTAATCCCCACTACGATTCCGGCCAACTTTTGGATGCTTTCCGACGCCAACAACCAATTACTCGGCGGCGGAGGCGACTCTCTATGGAGGGTTCAGTCGGCCAACAACCAAGACGCCGCTTTATATAGATTAGGACAACCCTCCGGTGGTAATAATTTACGTTTATCCAATAATCTGGCTGCTCCATTGACGCTCCTCCCTGGAAAGCCACTCTCTTTGGGACCCACTGCCGGAGGTGGACGTGGAACCATGAATGATGACGGACACTTGAATATCTACGCCGCCCAAGATCCGCCGCATGGGGCGGCTCCCGACACCGGCGTCTCCTAA | 852 | 51.06 | MEAGNDQLQYHQNHRSTTSFPLQLLEKKEYDNNPQPPLDIISKKPSPKRTSTKDRHTKVDGRGRRTRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFNSLNTSLRRSATSISLPSQLRSSSYYHPGVMGFNSEAITNNMTQPKEDHHYLHQSTTGLIPTTIPANFWMLSDANNQLLGGGGDSLWRVQSANNQDAALYRLGQPSGGNNLRLSNNLAAPLTLLPGKPLSLGPTAGGGRGTMNDDGHLNIYAAQDPPHGAAPDTGVS | 283 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 27239889 | 27241715 | + | ClCG04G012380.1 | Cla04g01209 | 271437 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla04g01209 | 283 | MobiDBLite | consensus disorder prediction | 46 | 62 | - | - | |
| Cla04g01209 | 283 | MobiDBLite | consensus disorder prediction | 1 | 62 | - | - | |
| Cla04g01209 | 283 | PANTHER | TRANSCRIPTION FACTOR TCP23 | 40 | 161 | - | - | |
| Cla04g01209 | 283 | PANTHER | TRANSCRIPTION FACTOR TCP23 | 162 | 272 | - | - | |
| Cla04g01209 | 283 | MobiDBLite | consensus disorder prediction | 246 | 283 | - | - | |
| Cla04g01209 | 283 | Pfam | TCP family transcription factor | 50 | 155 | IPR017887 | - | |
| Cla04g01209 | 283 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 162 | 272 | IPR005333 | GO:0003700 | |
| Cla04g01209 | 283 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 40 | 161 | IPR005333 | GO:0003700 | |
| Cla04g01209 | 283 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Cla04g01209 | 283 | ProSiteProfiles | TCP domain profile. | 52 | 106 | IPR017887 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cla04g01209 | Cla06g01596 | CCT | |
| Cla04g01209 | Cla06g01596 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla04g00909 | Cla-Chr4:24081499 | Cla04g01209 | Cla-Chr4:27239889 | 4.45E-37 | dispersed | |
| Cla04g01209 | Cla-Chr4:27239889 | Cla11g01311 | Cla-Chr11:26626250 | 2.80E-43 | dispersed | |
| Cla05g00839 | Cla-Chr5:8313432 | Cla04g01209 | Cla-Chr4:27239889 | 2.90E-33 | dispersed | |
| Cla04g01209 | Cla-Chr4:27239889 | Cla05g02451 | Cla-Chr5:35942771 | 2.91E-54 | wgd | |
| Cla04g01209 | Cla-Chr4:27239889 | Cla06g01596 | Cla-Chr6:29505943 | 3.12E-73 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 60954 | PF03634 | TCP | 7.80E-36 | No_clan | Cla | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla04g01209 | - | - | csv:101218047 | 441.039 |