Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01216 ATGTTTGGTGCCAATCCAGAGACACCTCCCTTCCATTTTCTCACCATCAACACTCATTGCTTCCTCTCGATCTCGATCTCGATCATGGAAGCCCTTCATCTTCCCTACGAAATCCACCCCCATTCCCTCGCCGCCGCCGTCAAGGATCGGAGACCAGAGATTCAGGAGCTGCCGGAGCCGGACATCCATATCGCTACCTCCGGTGGACTTCGTATACCTGCGCATTCTACCATACTGGTACTCCATCCCACTTCAAATTTCGCCTTTAAATGTCGGTTAGTTGCAATTGCAATTAGACCTCACAAATTAGGGTTCGGAATTTCGTCGCCTGCGATTTGCTTGATTTTGCATTGGATTGGGGAATCTGGTTTCCCTTCTTTCTATTCTTCTATTGAATCGATTTCGATTACAGGCCTCGGTTTCATCGGTGCTAGAAAACATGATCGAGCAACCGCGAAAGCACCGGAGCTCCGAGAAAGTTATTCAAATTCTCGGCGTTCCGTGCGAGGCAGTCCCAGTCGATCGAGTCCAGTCAATCTTGGTAGGCGGAGTAAGTCTAAATTTGCCGGCGTTGCCTTTAGGTGCCCTGAAGAATATCTAAGGAAATATGGAATTCATCTTTTGGCGCTATCGCACGTTTACCTTGTTCCACATTTGAAGCAGCGATGCACCAAGCACTTGGCTCGAAATTTGACCATCGATAGCGTTATCGACATACTCCAACTCGCAAGAATGTGCGATGCACCAGATCTCTCACTCAGCTGTATGAAAATGGTGTCCAGCCACTTCAAGGCCGTCGAGAAAACGGAGGGCTGGAAATTCCTGCAAAAACACGACCCCTGGCTCGAGCTTCAAATTCTGCAGTTCATGGATGAATCCGAATTGAGGAGAAAGAGATGCAGAAGGCAGAGGAAGGAGCAGAGGGTGTATCTTCAGCTAAGCGACGCAATGGAGTGCTTAGAGCATATCTGTAAAGAAGGGTGTACAAACGTTGGGCCGCTGGACGTGGAACCCACAAAGAAGCAGCCATGTTCGAAATTTACAACGTGTCATGGAGTTCAGCTTCTGATTAAGCACTTTGCAACGTGTGAGAACAGAGTCCATGGAGGAGCCTGCTGGCGGTGCAAACGGATGTGGCAGCTTCTACGCTTGCATGCCTCCATTTGCGACCAATCCGATGCTTGCAAAGTCCCTCTTTGCAGGTTCATTCTCAATACCCCCTCTTTTTACGCCATACCTAAATTCTACCCTTTCCACCAAACTTTGATTTGA 1272 48.58 MFGANPETPPFHFLTINTHCFLSISISIMEALHLPYEIHPHSLAAAVKDRRPEIQELPEPDIHIATSGGLRIPAHSTILVLHPTSNFAFKCRLVAIAIRPHKLGFGISSPAICLILHWIGESGFPSFYSSIESISITGLGFIGARKHDRATAKAPELRESYSNSRRSVRGSPSRSSPVNLGRRSKSKFAGVAFRCPEEYLRKYGIHLLALSHVYLVPHLKQRCTKHLARNLTIDSVIDILQLARMCDAPDLSLSCMKMVSSHFKAVEKTEGWKFLQKHDPWLELQILQFMDESELRRKRCRRQRKEQRVYLQLSDAMECLEHICKEGCTNVGPLDVEPTKKQPCSKFTTCHGVQLLIKHFATCENRVHGGACWRCKRMWQLLRLHASICDQSDACKVPLCRFILNTPSFYAIPKFYPFHQTLI 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27299807 27301506 + ClCG04G012460.2 Cla04g01216 271444

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01216 423 MobiDBLite consensus disorder prediction 164 181 - -
Cla04g01216 423 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 1-LIKE ISOFORM X1 44 82 - -
Cla04g01216 423 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 1-LIKE ISOFORM X1 192 402 - -
Cla04g01216 423 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 44 82 IPR044513 -
Cla04g01216 423 Pfam TAZ zinc finger 314 400 IPR000197 -
Cla04g01216 423 SUPERFAMILY TAZ domain 306 403 IPR035898 -
Cla04g01216 423 SMART TAZ_2 307 401 IPR000197 -
Cla04g01216 423 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 192 402 IPR044513 -
Cla04g01216 423 MobiDBLite consensus disorder prediction 153 181 - -
Cla04g01216 423 CDD BACK 232 275 - -
Cla04g01216 423 Gene3D - 230 302 - -
Cla04g01216 423 Gene3D TAZ domain 303 407 IPR035898 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01216 - - - bhj:120082700 421.394
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla04g01216 Cla06g01618 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00313 Cla-Chr3:3746140 Cla04g01216 Cla-Chr4:27299807 4.30E-28 dispersed
Cla04g01216 Cla-Chr4:27299807 Cla03g01381 Cla-Chr3:29263183 1.24E-08 dispersed
Cla11g00560 Cla-Chr11:6339552 Cla04g01216 Cla-Chr4:27299807 8.79E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g481 . . . . . . . Bma12g01012 . . . Cma11g00169 . . . . Cpe04g01522 Bhi02g00365 Tan09g2174 Cmetu02g0192 . Hepe09g0147 . . Cla06g01618 Cam06g1797 Cec06g1847 Cco06g1854 Clacu06g1757 Cmu06g1701 Cre06g2519 . . . . . . . . . . . . Bpe07g00801 . . . . . Cmo11g00139 . . . . . Cpe18g00811 . . . . . . . Cla04g01216 . . . . . . Lsi06g01498 Csa01g00202 Chy02g02529 Cme02g01914
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001511 3 2 1 3 2 2 4 2 2 2 2 2 3 2 2 5 2 2 4 2 2 2 2 2 2 2 2 5 3 1 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60956 PF02135 zf-TAZ 4.90E-11 No_clan Cla TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla04g01216 Cla_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0