Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla04g01222 | ATGACGGTCACCACCACCCAACAACTCTTTGTTGTGTCTCTCATTTCTCTCACTCTCCTCACCACCGCAATTTTGTATTCAGAAGCCCATGGCTTGAACATGAACGCCATTGACAGATGCTGGAGATCCAACCCATACTGGAGAAGAAACAGGCAACAACTAGCCGTTTGCTCGGTTGGTTTCGCTGGAAAAATGACCAACAACATGGGAAGAAATCTCATACGCTACCAAGTCACGGACCCTAGCGACGACCCTATAAACCCACGCCCAGGTACGCTCAGATACGGCGCCACAATGATCAAACCCAAAGTCTGGATCACATTCCCAAAAGATATGCATATTGTGCTCAAGAAGCCGCTTCTCATTAGCAGCTTCACCGCCATCGACGGCCGAGGCGCCACCGTCCACATCACCGGGAATGCGTGTTTGATGGTGTTCAAAGCCACCAACATCATAATCCACGGCCTTATCATCCACCACTGCAGGGCTCAGGCGGCGGGTCGAGTCATGGGCCCCGATTCCAAGATCATTTCACTTGGACACGTAGACGGTGATGCCATTCGTTTAGTAACTGCCTCCAAAGTGTGGATTGACCACAACACGCTGTACCGTTGCGAGGATGGGTTGCTTGACGTCACCCGTGGGTCCACTGACATCACCATTTCCAACAATTGGTTCCGAGATCAAGACAAGGTTATTCTTCTTGGCCACGATGACGGTTATGTCCGAGATCGGAACATGAGAGTCACCGTCGTCTATAACCATTTTGGACCCAATTGCAACCAAAGAATGCCAAGGATTCGATATGGGTATGCACACGTGGCGAACAATTTGTACCAAGGTTGGACGCAATACGCAATTGGAGGGAGCATGAATCCAAGCGTCAAGAGTGAAGCCAACCTTTTCATCGCATCAAAGTCAAAACAAATTATATGGAGCACAGGGAAAGTAGAGGAGACGAAATGGAAGTTTCATTCAGTAAGAGACGTATTTGAAAACGGAGCTTTATTCGCGCAAATCGGTAAGGGAAGAGGAGGTGTAAAGCCAAATTACAACGCCCAACAACGCTTTCCGGTTGCAGATGCCAAGTGGCTTAGATCATTAACAGGCTCCTCCGGGGCATTGCGTTGCTCATCAAACTCAAAATGTTGA | 1152 | 48.87 | MTVTTTQQLFVVSLISLTLLTTAILYSEAHGLNMNAIDRCWRSNPYWRRNRQQLAVCSVGFAGKMTNNMGRNLIRYQVTDPSDDPINPRPGTLRYGATMIKPKVWITFPKDMHIVLKKPLLISSFTAIDGRGATVHITGNACLMVFKATNIIIHGLIIHHCRAQAAGRVMGPDSKIISLGHVDGDAIRLVTASKVWIDHNTLYRCEDGLLDVTRGSTDITISNNWFRDQDKVILLGHDDGYVRDRNMRVTVVYNHFGPNCNQRMPRIRYGYAHVANNLYQGWTQYAIGGSMNPSVKSEANLFIASKSKQIIWSTGKVEETKWKFHSVRDVFENGALFAQIGKGRGGVKPNYNAQQRFPVADAKWLRSLTGSSGALRCSSNSKC | 383 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 27334439 | 27335826 | - | ClCG04G012510.1 | Cla04g01222 | 271450 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla04g01222 | 383 | PRINTS | Pollen allergen Amb family signature | 57 | 74 | IPR018082 | - | |
Cla04g01222 | 383 | PRINTS | Pollen allergen Amb family signature | 119 | 135 | IPR018082 | - | |
Cla04g01222 | 383 | PRINTS | Pollen allergen Amb family signature | 183 | 204 | IPR018082 | - | |
Cla04g01222 | 383 | PRINTS | Pollen allergen Amb family signature | 263 | 282 | IPR018082 | - | |
Cla04g01222 | 383 | PRINTS | Pollen allergen Amb family signature | 285 | 304 | IPR018082 | - | |
Cla04g01222 | 383 | PRINTS | Pollen allergen Amb family signature | 354 | 377 | IPR018082 | - | |
Cla04g01222 | 383 | PANTHER | PECTATE LYASE | 20 | 380 | - | - | |
Cla04g01222 | 383 | SMART | amb_all | 111 | 308 | IPR002022 | - | |
Cla04g01222 | 383 | PANTHER | PECTATE LYASE 18-RELATED | 20 | 380 | IPR045032 | GO:0030570 | |
Cla04g01222 | 383 | SUPERFAMILY | Pectin lyase-like | 34 | 373 | IPR011050 | - | |
Cla04g01222 | 383 | Gene3D | - | 34 | 376 | IPR012334 | - | |
Cla04g01222 | 383 | Pfam | Pectate lyase | 123 | 302 | IPR002022 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla04g01222 | Cla-Chr4:27334439 | Cla01g02123 | Cla-Chr1:35485956 | 1.76E-106 | dispersed | |
Cla04g01222 | Cla-Chr4:27334439 | Cla03g00423 | Cla-Chr3:4856036 | 9.66E-108 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla04g01222 | K01728 | - | csv:101217103 | 676.781 |