Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla04g01222 ATGACGGTCACCACCACCCAACAACTCTTTGTTGTGTCTCTCATTTCTCTCACTCTCCTCACCACCGCAATTTTGTATTCAGAAGCCCATGGCTTGAACATGAACGCCATTGACAGATGCTGGAGATCCAACCCATACTGGAGAAGAAACAGGCAACAACTAGCCGTTTGCTCGGTTGGTTTCGCTGGAAAAATGACCAACAACATGGGAAGAAATCTCATACGCTACCAAGTCACGGACCCTAGCGACGACCCTATAAACCCACGCCCAGGTACGCTCAGATACGGCGCCACAATGATCAAACCCAAAGTCTGGATCACATTCCCAAAAGATATGCATATTGTGCTCAAGAAGCCGCTTCTCATTAGCAGCTTCACCGCCATCGACGGCCGAGGCGCCACCGTCCACATCACCGGGAATGCGTGTTTGATGGTGTTCAAAGCCACCAACATCATAATCCACGGCCTTATCATCCACCACTGCAGGGCTCAGGCGGCGGGTCGAGTCATGGGCCCCGATTCCAAGATCATTTCACTTGGACACGTAGACGGTGATGCCATTCGTTTAGTAACTGCCTCCAAAGTGTGGATTGACCACAACACGCTGTACCGTTGCGAGGATGGGTTGCTTGACGTCACCCGTGGGTCCACTGACATCACCATTTCCAACAATTGGTTCCGAGATCAAGACAAGGTTATTCTTCTTGGCCACGATGACGGTTATGTCCGAGATCGGAACATGAGAGTCACCGTCGTCTATAACCATTTTGGACCCAATTGCAACCAAAGAATGCCAAGGATTCGATATGGGTATGCACACGTGGCGAACAATTTGTACCAAGGTTGGACGCAATACGCAATTGGAGGGAGCATGAATCCAAGCGTCAAGAGTGAAGCCAACCTTTTCATCGCATCAAAGTCAAAACAAATTATATGGAGCACAGGGAAAGTAGAGGAGACGAAATGGAAGTTTCATTCAGTAAGAGACGTATTTGAAAACGGAGCTTTATTCGCGCAAATCGGTAAGGGAAGAGGAGGTGTAAAGCCAAATTACAACGCCCAACAACGCTTTCCGGTTGCAGATGCCAAGTGGCTTAGATCATTAACAGGCTCCTCCGGGGCATTGCGTTGCTCATCAAACTCAAAATGTTGA 1152 48.87 MTVTTTQQLFVVSLISLTLLTTAILYSEAHGLNMNAIDRCWRSNPYWRRNRQQLAVCSVGFAGKMTNNMGRNLIRYQVTDPSDDPINPRPGTLRYGATMIKPKVWITFPKDMHIVLKKPLLISSFTAIDGRGATVHITGNACLMVFKATNIIIHGLIIHHCRAQAAGRVMGPDSKIISLGHVDGDAIRLVTASKVWIDHNTLYRCEDGLLDVTRGSTDITISNNWFRDQDKVILLGHDDGYVRDRNMRVTVVYNHFGPNCNQRMPRIRYGYAHVANNLYQGWTQYAIGGSMNPSVKSEANLFIASKSKQIIWSTGKVEETKWKFHSVRDVFENGALFAQIGKGRGGVKPNYNAQQRFPVADAKWLRSLTGSSGALRCSSNSKC 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27334439 27335826 - ClCG04G012510.1 Cla04g01222 271450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla04g01222 383 PRINTS Pollen allergen Amb family signature 57 74 IPR018082 -
Cla04g01222 383 PRINTS Pollen allergen Amb family signature 119 135 IPR018082 -
Cla04g01222 383 PRINTS Pollen allergen Amb family signature 183 204 IPR018082 -
Cla04g01222 383 PRINTS Pollen allergen Amb family signature 263 282 IPR018082 -
Cla04g01222 383 PRINTS Pollen allergen Amb family signature 285 304 IPR018082 -
Cla04g01222 383 PRINTS Pollen allergen Amb family signature 354 377 IPR018082 -
Cla04g01222 383 PANTHER PECTATE LYASE 20 380 - -
Cla04g01222 383 SMART amb_all 111 308 IPR002022 -
Cla04g01222 383 PANTHER PECTATE LYASE 18-RELATED 20 380 IPR045032 GO:0030570
Cla04g01222 383 SUPERFAMILY Pectin lyase-like 34 373 IPR011050 -
Cla04g01222 383 Gene3D - 34 376 IPR012334 -
Cla04g01222 383 Pfam Pectate lyase 123 302 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01222 Cla-Chr4:27334439 Cla01g02123 Cla-Chr1:35485956 1.76E-106 dispersed
Cla04g01222 Cla-Chr4:27334439 Cla03g00423 Cla-Chr3:4856036 9.66E-108 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla04g01222 K01728 - csv:101217103 676.781